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For: Breen MS, Lazebnik RS, Wilson DL. Three-Dimensional Registration of Magnetic Resonance Image Data to Histological Sections with Model-Based Evaluation. Ann Biomed Eng 2005;33:1100-12. [PMID: 16133918 DOI: 10.1007/s10439-005-5778-8] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2003] [Accepted: 04/08/2005] [Indexed: 10/25/2022]
Number Cited by Other Article(s)
1
Nolte P, Dullin C, Svetlove A, Brettmacher M, Rußmann C, Schilling AF, Alves F, Stock B. Current Approaches for Image Fusion of Histological Data with Computed Tomography and Magnetic Resonance Imaging. Radiol Res Pract 2022;2022:6765895. [PMID: 36408297 PMCID: PMC9668453 DOI: 10.1155/2022/6765895] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 08/17/2022] [Indexed: 10/30/2023]  Open
2
Correlation of in-vivo imaging with histopathology: A review. Eur J Radiol 2021;144:109964. [PMID: 34619617 DOI: 10.1016/j.ejrad.2021.109964] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 08/26/2021] [Accepted: 09/17/2021] [Indexed: 11/21/2022]
3
Pichat J, Iglesias JE, Yousry T, Ourselin S, Modat M. A Survey of Methods for 3D Histology Reconstruction. Med Image Anal 2018;46:73-105. [DOI: 10.1016/j.media.2018.02.004] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 02/02/2018] [Accepted: 02/14/2018] [Indexed: 02/08/2023]
4
Chicherova N, Hieber SE, Khimchenko A, Bikis C, Müller B, Cattin P. Automatic deformable registration of histological slides to μCT volume data. J Microsc 2018. [PMID: 29533457 DOI: 10.1111/jmi.12692] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
5
Gangolli M, Holleran L, Hee Kim J, Stein TD, Alvarez V, McKee AC, Brody DL. Quantitative validation of a nonlinear histology-MRI coregistration method using generalized Q-sampling imaging in complex human cortical white matter. Neuroimage 2017;153:152-167. [PMID: 28365421 DOI: 10.1016/j.neuroimage.2017.03.059] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Revised: 03/24/2017] [Accepted: 03/29/2017] [Indexed: 12/14/2022]  Open
6
Luciano NJ, Sati P, Nair G, Guy JR, Ha SK, Absinta M, Chiang WY, Leibovitch EC, Jacobson S, Silva AC, Reich DS. Utilizing 3D Printing Technology to Merge MRI with Histology: A Protocol for Brain Sectioning. J Vis Exp 2016. [PMID: 28060281 PMCID: PMC5226356 DOI: 10.3791/54780] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
7
Shojaii R, Martel AL. Optimized SIFTFlow for registration of whole-mount histology to reference optical images. J Med Imaging (Bellingham) 2016;3:047501. [PMID: 27774494 DOI: 10.1117/1.jmi.3.4.047501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Accepted: 09/28/2016] [Indexed: 11/14/2022]  Open
8
Shojaii R, Bacopulos S, Yang W, Karavardanyan T, Spyropoulos D, Raouf A, Martel A, Seth A. Reconstruction of 3-dimensional histology volume and its application to study mouse mammary glands. J Vis Exp 2014:e51325. [PMID: 25145969 DOI: 10.3791/51325] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
9
Gibson E, Gaed M, Gómez JA, Moussa M, Romagnoli C, Pautler S, Chin JL, Crukley C, Bauman GS, Fenster A, Ward AD. 3D prostate histology reconstruction: an evaluation of image-based and fiducial-based algorithms. Med Phys 2014;40:093501. [PMID: 24007184 DOI: 10.1118/1.4816946] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
10
McJunkin TR, Trowbridge TL, Wright KE, Scott JR. Integrated fiducial sample mount and software for correlated microscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2014;85:023701. [PMID: 24593365 DOI: 10.1063/1.4862935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
11
Adler DH, Pluta J, Kadivar S, Craige C, Gee JC, Avants BB, Yushkevich PA. Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI. Neuroimage 2013;84:505-23. [PMID: 24036353 DOI: 10.1016/j.neuroimage.2013.08.067] [Citation(s) in RCA: 105] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 08/09/2013] [Accepted: 08/29/2013] [Indexed: 10/26/2022]  Open
12
Jiang L, Greenwood TR, Amstalden van Hove ER, Chughtai K, Raman V, Winnard PT, Heeren R, Artemov D, Glunde K. Combined MR, fluorescence and histology imaging strategy in a human breast tumor xenograft model. NMR IN BIOMEDICINE 2013;26:285-298. [PMID: 22945331 PMCID: PMC4162316 DOI: 10.1002/nbm.2846] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2011] [Revised: 07/25/2012] [Accepted: 07/26/2012] [Indexed: 05/29/2023]
13
Hughes C, Rouvière O, Mege-Lechevallier F, Souchon R, Prost R. Robust Alignment of Prostate Histology Slices With Quantified Accuracy. IEEE Trans Biomed Eng 2013;60:281-91. [DOI: 10.1109/tbme.2012.2225835] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
14
Registration of prostate histology images to ex vivo MR images via strand‐shaped fiducials. J Magn Reson Imaging 2012;36:1402-12. [DOI: 10.1002/jmri.23767] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Accepted: 06/29/2012] [Indexed: 11/07/2022]  Open
15
Kimm SY, Tarin TV, Lee JH, Hu B, Jensen K, Nishimura D, Brooks JD. Methods for registration of magnetic resonance images of ex vivo prostate specimens with histology. J Magn Reson Imaging 2012;36:206-212. [DOI: 10.1002/jmri.23614] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/30/2023]  Open
16
Chughtai K, Jiang L, Greenwood TR, Klinkert I, Amstalden van Hove ER, Heeren RMA, Glunde K. Fiducial markers for combined 3-dimensional mass spectrometric and optical tissue imaging. Anal Chem 2012;84:1817-23. [PMID: 22283706 PMCID: PMC3302962 DOI: 10.1021/ac203373h] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
17
Seise M, Alhonnoro T, Kolesnik M. Interactive registration of 2D histology and 3D CT data for assessment of radiofrequency ablation treatment. J Pathol Inform 2012;2:S9. [PMID: 22811965 PMCID: PMC3312715 DOI: 10.4103/2153-3539.92036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2011] [Accepted: 10/20/2011] [Indexed: 11/05/2022]  Open
18
McGrath DM, Foltz WD, Al-Mayah A, Niu CJ, Brock KK. Quasi-static magnetic resonance elastography at 7 T to measure the effect of pathology before and after fixation on tissue biomechanical properties. Magn Reson Med 2011;68:152-65. [DOI: 10.1002/mrm.23223] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2011] [Revised: 08/15/2011] [Accepted: 08/29/2011] [Indexed: 01/22/2023]
19
Nabuurs RJA, Hegeman I, Natté R, van Duinen SG, van Buchem MA, van der Weerd L, Webb AG. High-field MRI of single histological slices using an inductively coupled, self-resonant microcoil: application to ex vivo samples of patients with Alzheimer's disease. NMR IN BIOMEDICINE 2011;24:351-357. [PMID: 20960578 DOI: 10.1002/nbm.1598] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2010] [Revised: 07/08/2010] [Accepted: 07/09/2010] [Indexed: 05/30/2023]
20
Haney CR, Pelizzari CA, Foxley S, Zamora MA, Mustafi D, Tretiakova M, Li S, Fan X, Karczmar GS. HiSStology: high spectral and spatial resolution magnetic resonance imaging detection of vasculature validated by histology and micro-computed tomography. Mol Imaging 2011;10:187-96. [PMID: 21443840 DOI: 10.2310/7290.2010.00033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2010] [Accepted: 03/31/2010] [Indexed: 11/18/2022]  Open
21
Cifor A, Bai L, Pitiot A. Smoothness-guided 3-D reconstruction of 2-D histological images. Neuroimage 2011;56:197-211. [PMID: 21277374 DOI: 10.1016/j.neuroimage.2011.01.060] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2010] [Accepted: 01/20/2011] [Indexed: 10/18/2022]  Open
22
Xiao G, Bloch BN, Chappelow J, Genega EM, Rofsky NM, Lenkinski RE, Tomaszewski J, Feldman MD, Rosen M, Madabhushi A. Determining histology-MRI slice correspondences for defining MRI-based disease signatures of prostate cancer. Comput Med Imaging Graph 2011;35:568-78. [PMID: 21255974 DOI: 10.1016/j.compmedimag.2010.12.003] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2010] [Revised: 12/10/2010] [Accepted: 12/13/2010] [Indexed: 11/30/2022]
23
Three-dimensional cardiac tissue image registration for analysis of in vivo electrical mapping. Ann Biomed Eng 2010;39:235-48. [PMID: 20853026 DOI: 10.1007/s10439-010-0163-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2010] [Accepted: 09/03/2010] [Indexed: 10/19/2022]
24
McGrath DM, Vlad RM, Foltz WD, Brock KK. Technical note: fiducial markers for correlation of whole-specimen histopathology with MR imaging at 7 tesla. Med Phys 2010;37:2321-8. [PMID: 20527566 DOI: 10.1118/1.3395575] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
25
Optimum slicing of radical prostatectomy specimens for correlation between histopathology and medical images. Int J Comput Assist Radiol Surg 2010;5:471-87. [DOI: 10.1007/s11548-010-0405-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2009] [Accepted: 01/15/2010] [Indexed: 12/13/2022]
26
Scheenstra AE, van de Ven RC, van der Weerd L, van den Maagdenberg AM, Dijkstra J, Reiber JH. Automated Segmentation of in Vivo and Ex Vivo Mouse Brain Magnetic Resonance Images. Mol Imaging 2009. [DOI: 10.2310/7290.2009.00004] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
27
Christian N, Lee JA, Bol A, De Bast M, Gallez B, Grégoire V. Immobilization device for in vivo and in vitro multimodality image registration of rodent tumors. Radiother Oncol 2008;87:147-51. [DOI: 10.1016/j.radonc.2008.02.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2007] [Revised: 02/14/2008] [Accepted: 02/14/2008] [Indexed: 10/22/2022]
28
Weinberg BD, Krupka TM, Haaga JR, Exner AA. Combination of sensitizing pretreatment and radiofrequency tumor ablation: evaluation in rat model. Radiology 2008;246:796-803. [PMID: 18309015 DOI: 10.1148/radiol.2463070228] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
29
Krupka TM, Weinberg BD, Ziats NP, Haaga JR, Exner AA. Injectable polymer depot combined with radiofrequency ablation for treatment of experimental carcinoma in rat. Invest Radiol 2007;41:890-7. [PMID: 17099428 DOI: 10.1097/01.rli.0000246102.56801.2f] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
30
Meadowcroft MD, Zhang S, Liu W, Park BS, Connor JR, Collins CM, Smith MB, Yang QX. Direct magnetic resonance imaging of histological tissue samples at 3.0T. Magn Reson Med 2007;57:835-41. [PMID: 17457873 PMCID: PMC4040526 DOI: 10.1002/mrm.21213] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
31
Budde MD, Kim JH, Liang HF, Schmidt RE, Russell JH, Cross AH, Song SK. Toward accurate diagnosis of white matter pathology using diffusion tensor imaging. Magn Reson Med 2007;57:688-95. [PMID: 17390365 DOI: 10.1002/mrm.21200] [Citation(s) in RCA: 318] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
32
Weinberg BD, Blanco E, Lempka SF, Anderson JM, Exner AA, Gao J. Combined radiofrequency ablation and doxorubicin-eluting polymer implants for liver cancer treatment. J Biomed Mater Res A 2007;81:205-13. [PMID: 17120205 DOI: 10.1002/jbm.a.30926] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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