Granular support vector machine: a review

Efficient cocrystal coformer screening based on a Machine learning Strategy: A case study for the preparation of imatinib cocrystal with enhanced physicochemical properties

Cocrystal engineering, which involves the self-assembly of two or more components into a solid-state supramolecular structure through non-covalent interactions, has emerged as a promising approach to tailor the physicochemical properties of active pharmaceutical ingredient (API). Efficient coformer screening for cocrystal remains a challenge. Herein, a prediction strategy based on machine learning algorithms was employed to predict cocrystal formation and seven reliable models with accuracy over 0.890 were successfully constructed. Imatinib was selected as the model drug and the models established were applied to screen 31 potential coformers. Experimental verification results indicated RF-8 is the optimal model among seven models with an accuracy of 0.839. When the seven models were combined for coformer screening of Imatinib, the combinational model achieved an accuracy of 0.903, and eight new solid forms were observed and characterized. Benefiting from intermolecular interactions, the obtained multicomponent crystals displayed enhanced physicochemical properties. Dissolution and solubility experiments showed the prepared multicomponent crystals had higher cumulative dissolution rate and remarkably improved the solubility of imatinib, and IM-MC exhibited comparable solubility to Imatinib mesylate α form. Stability test and cytotoxicity results showed that multicomponent crystals exhibited excellent stability and the drug-drug cocrystal IM-5F exhibited higher cytotoxicity than pure API.

QSAR Study of PARP Inhibitors by GA-MLR, GA-SVM and GA-ANN Approaches

Background:

The poly(ADP-ribose) polymerases (PARP) is a nuclear enzyme superfamily present in eukaryotes.

Methods:

In the present report, some efficient linear and non-linear methods including multiple linear regression (MLR), support vector machine (SVM) and artificial neural networks (ANN) were successfully used to develop and establish quantitative structure-activity relationship (QSAR) models capable of predicting pEC50 values of tetrahydropyridopyridazinone derivatives as effective PARP inhibitors. Principal component analysis (PCA) was used to a rational division of the whole data set and selection of the training and test sets. A genetic algorithm (GA) variable selection method was employed to select the optimal subset of descriptors that have the most significant contributions to the overall inhibitory activity from the large pool of calculated descriptors.

Results:

The accuracy and predictability of the proposed models were further confirmed using crossvalidation, validation through an external test set and Y-randomization (chance correlations) approaches. Moreover, an exhaustive statistical comparison was performed on the outputs of the proposed models. The results revealed that non-linear modeling approaches, including SVM and ANN could provide much more prediction capabilities.

Conclusion:

Among the constructed models and in terms of root mean square error of predictions (RMSEP), cross-validation coefficients (Q2 LOO and Q2 LGO), as well as R2 and F-statistical value for the training set, the predictive power of the GA-SVM approach was better. However, compared with MLR and SVM, the statistical parameters for the test set were more proper using the GA-ANN model.

Arrhythmia Diagnosis by Using Level-Crossing ECG Sampling and Sub-Bands Features Extraction for Mobile Healthcare

Mobile healthcare is an emerging technique for clinical applications. It is usually based on cloud-connected biomedical implants. In this context, a novel solution is presented for the detection of arrhythmia by using electrocardiogram (ECG) signals. The aim is to achieve an effective solution by using real-time compression, efficient signal processing, and data transmission. The system utilizes level-crossing-based ECG signal sampling, adaptive-rate denoising, and wavelet-based sub-band decomposition. Statistical features are extracted from the sub-bands and used for automated arrhythmia classification. The performance of the system was studied by using five classes of arrhythmia, obtained from the MIT-BIH dataset. Experimental results showed a three-fold decrease in the number of collected samples compared to conventional counterparts. This resulted in a significant reduction of the computational cost of the post denoising, features extraction, and classification. Moreover, a seven-fold reduction was achieved in the amount of data that needed to be transmitted to the cloud. This resulted in a notable reduction in the transmitter power consumption, bandwidth usage, and cloud application processing load. Finally, the performance of the system was also assessed in terms of the arrhythmia classification, achieving an accuracy of 97%.

Nonparametric Hyperbox Granular Computing Classification Algorithms

Parametric granular computing classification algorithms lead to difficulties in terms of parameter selection, the multiple performance times of algorithms, and increased algorithm complexity in comparison with nonparametric algorithms. We present nonparametric hyperbox granular computing classification algorithms (NPHBGrCs). Firstly, the granule has a hyperbox form, with the beginning point and the endpoint induced by any two vectors in N-dimensional (N-D) space. Secondly, the novel distance between the atomic hyperbox and the hyperbox granule is defined to determine the joining process between the atomic hyperbox and the hyperbox. Thirdly, classification problems are used to verify the designed NPHBGrC. The feasibility and superiority of NPHBGrC are demonstrated by the benchmark datasets compared with parametric algorithms such as HBGrC.