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Alippi AM, Lamelza F, Torres Tejerizo GA, Abrahamovich E, López AC. Identification, phylogenetic analysis, and genome mining of the tetracycline-resistant Bacillus thuringiensis strain m401 reveal its potential for biotechnological and biocontrol applications. Rev Argent Microbiol 2023; 55:317-331. [PMID: 37400312 DOI: 10.1016/j.ram.2023.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 04/03/2023] [Accepted: 05/22/2023] [Indexed: 07/05/2023] Open
Abstract
Bacillus thuringiensis is an entomopathogen belonging to the Bacillus cereus clade. We isolated a tetracycline-resistant strain called m401, recovered it from honey, and identified it as Bacillus thuringiensis sv. kumamotoensis based on the average nucleotide identity calculations (ANIb) comparison and the analysis of the gyrB gene sequences of different B. thuringiensis serovars. Sequences with homology to virulence factors [cytK, nheA, nheB, nheC, hblA, hblB, hblC, hblD, entFM, and inhA] and tetracycline resistance genes [tet(45), tet(V), and tet(M)/tet(W)/tet(O)/tet(S) family] were identified in the bacterial chromosome. The prediction of plasmid-coding regions revealed homolog sequences to the MarR and TetR/AcrR family of transcriptional regulators, toxins, and lantipeptides. The genome mining analysis revealed 12 regions of biosynthetic gene clusters responsible for synthesizing secondary metabolites. We identified biosynthetic gene clusters coding for bacteriocins, siderophores, ribosomally synthesized post-translationally modified peptide products, and non-ribosomal peptide synthetase clusters that provide evidence for the possible use of Bt m401 as a biocontrol agent. Furthermore, Bt m401 showed high inhibition against all Paenibacillus larvae genotypes tested in vitro. In conclusion, Bt m401 owns various genes involved in different biological processes, such as transductional regulators associated with antibiotic resistance, toxins, and antimicrobial peptides with potential biotechnological and biocontrol applications.
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Affiliation(s)
- Adriana M Alippi
- Unidad de Bacteriología, Centro de Investigaciones de Fitopatología (CIDEFI), Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, cc 31, calle 60 y 119, S/N, 1900 La Plata, Argentina; Comisión de Investigaciones Científicas de la Provincia de Buenos Aires (CICBA), Argentina.
| | - Florencia Lamelza
- Unidad de Bacteriología, Centro de Investigaciones de Fitopatología (CIDEFI), Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, cc 31, calle 60 y 119, S/N, 1900 La Plata, Argentina
| | - Gonzalo A Torres Tejerizo
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET-CCT La Plata), Argentina; IBBM (Instituto de Biotecnología y Biología Molecular), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, UNLP, Calles 49 y 115 S/N, 1900 La Plata, Argentina
| | - Eliana Abrahamovich
- YPF Tecnología (Y-Tec), Av. del Petróleo S/N entre 129 y 143, 1923 Berisso, Argentina
| | - Ana C López
- Unidad de Bacteriología, Centro de Investigaciones de Fitopatología (CIDEFI), Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, cc 31, calle 60 y 119, S/N, 1900 La Plata, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET-CCT La Plata), Argentina
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Ortiz-Rodríguez T, Mendoza-Acosta F, Martínez-Zavala SA, Salcedo-Hernández R, Casados-Vázquez LE, Bideshi DK, Barboza-Corona JE. Thurincin H Is a Nonhemolytic Bacteriocin of Bacillus thuringiensis with Potential for Applied Use. Probiotics Antimicrob Proteins 2022:10.1007/s12602-022-09952-2. [PMID: 35610496 DOI: 10.1007/s12602-022-09952-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/10/2022] [Indexed: 11/24/2022]
Abstract
Thurincin H, a bacteriocin produced by Bacillus thuringiensis, exhibits antibacterial activity against Gram-positive and Gram-negative bacteria. While much is known about its expression and antimicrobial spectrum, its hemolytic property has yet to be established. In this study, thurincin H was produced in a plasmid-free acrystalliferous strain of B. thuringiensis (Bt Cry-B) that naturally lacked antimicrobial and hemolytic activities. When grown in Tryptic Soy Broth (TSB), the bacteriocin's maximal production in Bt Cry-B harboring the thurincin H genetic cluster (Bt Cry-B/pThur) was observed at 24 h. Thurincin H was purified as a sole peptide of ~5 kDa using three purification steps, i.e., salt precipitation, ultrafiltration, and gel filtration chromatography. The bacteriocin showed inhibitory activity against B. cereus (5631 U), Bt Cry-B (8827 U), E. faecium wild type (11,197 U), and E. faecium ATCC 19,434 (6950 U), but not against Bt Cry-B/pThurH and Bt Cry-B/pThurHΔThnA. In addition, a minimum inhibitory concentration (MIC) of 5.0 μg/mL against B. cereus 183 was observed. In silico predictions suggested that thuricin H lacks hemolytic activity, which was validated in vitro using 4 × the MIC, i.e., 20 μg/ml. Our data lay a foundation for the potential safe use of thurincin H as an antibacterial peptide for medical use, in food products, and for expression in probiotic bacteria.
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Affiliation(s)
- Tomás Ortiz-Rodríguez
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México
| | - Fernanda Mendoza-Acosta
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México
| | - Sheila A Martínez-Zavala
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México
| | - Rubén Salcedo-Hernández
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México.,Departamento de Alimentos, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México
| | - Luz E Casados-Vázquez
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México.,Departamento de Alimentos, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México.,CONACYT- Universidad de Guanajuato, Campus Irapuato-Salamanca, Irapuato, Guanajuato, 36500, México
| | - Dennis K Bideshi
- Department of Biological Sciences, California Baptist University, 8432 Magnolia Avenue, Riverside, CA, 92504, USA
| | - José E Barboza-Corona
- Posgrado en Biociencias, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México. .,Departamento de Alimentos, Universidad de Guanajuato Campus Irapuato-Salamanca, División de Ciencias de la Vida, Irapuato, Guanajuato, 36500, México.
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Massange-Sánchez JA, Núñez-Valle MA, Barboza-Corona JE, Casados-Vazquez LE. The thnI gene is not required for thurincin H biosynthesis or immunity. Arch Microbiol 2022; 204:344. [PMID: 35596088 DOI: 10.1007/s00203-022-02938-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 03/16/2022] [Accepted: 04/01/2022] [Indexed: 11/02/2022]
Abstract
Thurincin H is a bacteriocin produced by Bacillus thuringiensis, it is encoded in a group of ten genes, most of which have been characterized experimentally or by homology. However, the activity of the thnI gene encoding a 95 amino acid ORF remains unknown. In this work, the thnI gene was cloned under the regulation of two promoters and transformed into a sensitive strain to determine if it acts as an immunity protein. In addition, a deletion mutant without the thnI gene was used to test whether thnI is required or not for the biosynthesis of thurincin H. It was concluded that thnI does not provide immunity and is not required to produce thurincin H.
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Affiliation(s)
- Julio Armando Massange-Sánchez
- Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C. (CIATEJ), Unidad de Biotecnología Vegetal, 44270, Guadalajara, Mexico
| | - Mario Alberto Núñez-Valle
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, 36500, Irapuato, Guanajuato, Mexico
| | - José E Barboza-Corona
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, 36500, Irapuato, Guanajuato, Mexico.,Food Department, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, 36500, Irapuato, Guanajuato, Mexico
| | - Luz Edith Casados-Vazquez
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, 36500, Irapuato, Guanajuato, Mexico. .,Food Department, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, 36500, Irapuato, Guanajuato, Mexico. .,Cátedra Conacyt, Universidad de Guanajuato, Guanajuato, Mexico.
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The synergistic effect of thurincin H and power ultrasound: An alternative for the inactivation of Listeria innocua ATCC 33090 and Escherichia coli K-12 in liquid food matrices. Food Control 2022. [DOI: 10.1016/j.foodcont.2021.108778] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Gaona-Mendoza AS, Bravo Rivas MC, Barboza-Corona JE, Massange-Sánchez JA, Casados-Vázquez LE. Expression of thurincin H, ChiA74 and Cry proteins at the sporulation phase in Bacillus thuringiensis HD1. J Appl Microbiol 2021; 132:3049-3057. [PMID: 34967963 DOI: 10.1111/jam.15434] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 12/03/2021] [Accepted: 12/28/2021] [Indexed: 11/29/2022]
Abstract
AIMS The objective of this study was to produce thurincin H, ChiA74 and Cry proteins together using B. thuringiensis subsp. kurstaki HD1 as a heterologous host. METHODS AND RESULTS pSTAB-ThurH and pSTAB-ChiA74 constructs were designed to produce thurincin H and chitinase respectively, at the sporulation phase. They were transformed into Bt HD1 generating the recombinant strains HD1/pSTAB-ThurH and HD1/pSTAB-ThurH/pSTAB-ChiA74. Antimicrobial and chitinolytic activity tests were performed with recombinant strains. Both strains were able to produce thurincin H up to 72 h with antibacterial activity of ~ 4000 U mg-1 . The HD1/pSTAB-ThurH/pSTAB-ChiA74 strain also showed chitinolytic activity of ~ 23 mU mg-1 at 72 h. All B. thuringiensis strains exhibited crystal formation at 72, and 96 h. In addition, the application of thurincin H in corn seeds increased the germination percentage and root length by 7 % and 10 %, respectively. CONCLUSIONS We showed that is possible to produce three proteins of biotechnological interest at the sporulation stage in B. thuringiensis, which two of them (thurincin H, and ChiA74) are naturally expressed in the vegetative stage. SIGNIFICANCE AND IMPACT OF THE STUDY These results form the basis for developing of a biocontrol and biostimulator product that can be used as an alternative for chemical application.
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Affiliation(s)
- America S Gaona-Mendoza
- Universidad de Guanajuato Campus Irapuato-Salamanca, Life Science Division, Graduate Program in Biosciences.,Food Department, Irapuato, Guanajuato, Mexico, 36500
| | - Martha C Bravo Rivas
- Universidad de Guanajuato Campus Irapuato-Salamanca, Life Science Division, Graduate Program in Biosciences.,Food Department, Irapuato, Guanajuato, Mexico, 36500
| | - José E Barboza-Corona
- Universidad de Guanajuato Campus Irapuato-Salamanca, Life Science Division, Graduate Program in Biosciences.,Food Department, Irapuato, Guanajuato, Mexico, 36500
| | - Julio A Massange-Sánchez
- Unidad de Biotecnología Vegetal, Centro de Investigación y Asistencia en Tecnología, Diseño del Estado de Jalisco A.C. (CIATEJ), Guadalajara, 44270, Mexico
| | - Luz E Casados-Vázquez
- Universidad de Guanajuato Campus Irapuato-Salamanca, Life Science Division, Graduate Program in Biosciences.,Food Department, Irapuato, Guanajuato, Mexico, 36500.,Cátedra Conacyt-Universidad de Guanajuato
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Zhu Y, Zhou C, Wang Y, Li C. Transporter Engineering for Microbial Manufacturing. Biotechnol J 2020; 15:e1900494. [PMID: 32298528 DOI: 10.1002/biot.201900494] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 03/30/2020] [Indexed: 01/08/2023]
Abstract
Microbes play an important role in biotransformation and biosynthesis of biofuels, natural products, and polymers. Therefore, microbial manufacturing has been widely used in medicine, industry, and agriculture. However, common strategies including enzyme engineering, pathway optimization, and host engineering are generally inadequate to obtain an efficient microbial production system. Transporter engineering provides an alternative strategy to promote the transmembrane transfer of substrates, intermediates, and final products in microbial cells and thus enhances production by alleviating feedback inhibition and cytotoxicity caused by final products. According to the current studies in transport engineering, native transporters usually have low expression and poor transportation ability, resulting in inefficient transport processes and microbial production. In this review, current approaches for transporter mining, characterization, and verification are comprehensively summarized. Practical approaches to enhance the transport system in engineered cells, such as balancing transporter overexpression and cell growth, and evolution of native transporters are discussed. Furthermore, the applications of transporter engineering in microbial manufacturing, including enhancement of substrate utilization, concentration of metabolic flux to the target pathway, and acceleration of efflux and recovery of products, demonstrate its outstanding advantages and promising prospects.
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Affiliation(s)
- Ying Zhu
- Department of Biochemical Engineering, Institute for Synthetic Biosystem, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, P. R. China
| | - Chen Zhou
- Department of Biochemical Engineering, Institute for Synthetic Biosystem, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, P. R. China
| | - Ying Wang
- Department of Biochemical Engineering, Institute for Synthetic Biosystem, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, P. R. China
| | - Chun Li
- Department of Biochemical Engineering, Institute for Synthetic Biosystem, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, P. R. China
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Improving the yields of thurincin H in a native producer strain. Antonie van Leeuwenhoek 2020; 113:1061-1066. [PMID: 32314103 DOI: 10.1007/s10482-020-01408-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Accepted: 03/18/2020] [Indexed: 10/24/2022]
Abstract
Thurincin H is a bacteriocin produced by Bacillus thuringiensis with activity against a wide range of bacteria, including Gram positive and Gram negative. Disadvantages of producing thurincin H in B. thuringiensis is the low production level in the native strain probably due to the highly regulated mechanism of biosynthesis. The present study aimed to increase the synthesis of thurincin H produced by the native strain (Btm) through the establishment of additional copies of the structural gene (i.e. thnA) and the genes responsible for the bacterial self-immunity (thnRDE). Here, three recombinant strains of Btm were generated, harboring three, six and nine additional copies of thnA, and three with one copy of thnRDE upstream to the thnA copies. Data showed that the highest yield was obtained at 16 h using three additional copies of thnA (Btm/pHT-One) with a bacteriocin activity of 20,000 U/mg compared with the parental strain which showed 10,000 U/mg, increase of 100% in the production of the bacteriocin. Also, the addition of the genes responsible for self-immunity showed that recombinant B. thuringiensis (Btm/pHT-TwoRDE) can support six additional copies of thnA with an increase of 60% compared with the parental strain.
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Martínez-Zavala SA, Barboza-Pérez UE, Hernández-Guzmán G, Bideshi DK, Barboza-Corona JE. Chitinases of Bacillus thuringiensis: Phylogeny, Modular Structure, and Applied Potentials. Front Microbiol 2020; 10:3032. [PMID: 31993038 PMCID: PMC6971178 DOI: 10.3389/fmicb.2019.03032] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 12/17/2019] [Indexed: 01/09/2023] Open
Abstract
The most important bioinsecticide used worldwide is Bacillus thuringiensis and its hallmark is a rich variety of insecticidal Cry protein, many of which have been genetically engineered for expression in transgenic crops. Over the past 20 years, the discovery of other insecticidal proteins and metabolites synthesized by B. thuringiensis, including chitinases, antimicrobial peptides, vegetative insecticidal proteins (VIP), and siderophores, has expanded the applied value of this bacterium for use as an antibacterial, fungicidal, and nematicidal resource. These properties allow us to view B. thuringiensis not only as an entity for the production of a particular metabolite, but also as a multifaceted microbial factory. In particular, chitinases of B. thuringiensis are secreted enzymes that hydrolyze chitin, an abundant molecule in the biosphere, second only to cellulose. The observation that chitinases increase the insecticidal activity of Cry proteins has stimulated further study of these enzymes produced by B. thuringiensis. Here, we provide a review of a subset of our knowledge of B. thuringiensis chitinases as it relates to their phylogenetic relationships, regulation of expression, biotechnological potential for controlling entomopathogens, fungi, and nematodes, and their use in generating chitin-derived oligosaccharides (ChOGs) that possess antibacterial activities against a number of clinically significant bacterial pathogens. Recent advances in the structural organization of these enzymes are also discussed, as are our perspective for future studies.
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Affiliation(s)
- Sheila A Martínez-Zavala
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, Guanajuato, Mexico
| | - Uriel E Barboza-Pérez
- School of Biological Sciences, The University of Edinburgh, Edinburgh, United Kingdom
| | - Gustavo Hernández-Guzmán
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, Guanajuato, Mexico.,Department of Biological Sciences, California Baptist University, Riverside, CA, United States
| | - Dennis K Bideshi
- Department of Entomology, University of California, Riverside, Riverside, CA, United States.,Food Department, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, Guanajuato, Mexico
| | - José E Barboza-Corona
- Graduate Program in Biosciences, Life Science Division, University of Guanajuato Campus Irapuato-Salamanca, Guanajuato, Mexico.,Department of Biological Sciences, California Baptist University, Riverside, CA, United States
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Oros-Flores ZS, Casados-Vázquez LE, Bideshi DK, Salcedo-Hernández R, Barboza-Corona JE. Co-synthesis of kenyacin 404 and heterologous thurincin H enhances the antibacterial activity of Bacillus thuringiensis. Biotechnol Lett 2018; 40:1531-1540. [DOI: 10.1007/s10529-018-2601-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Accepted: 08/08/2018] [Indexed: 02/07/2023]
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