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Guo L, Liu J, Hou Q, Zhao B, Zhang X, Wang H. Salipaludibacillus daqingensis sp. nov., a moderately halophilic bacterium isolated from an oilfield. Int J Syst Evol Microbiol 2023; 73. [PMID: 37917134 DOI: 10.1099/ijsem.0.006126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023] Open
Abstract
A novel alkaliphilic, Gram-stain-positive, moderately halophilic, rod-shaped, endospore-forming, motile, facultatively anaerobic bacterium (DQ-9T) was isolated from a sediment sample collected from Daqing oilfield in China, and characterized by a polyphasic taxonomic approach. Strain DQ-9T formed yellow pigment and grew occurred at salinities of 1-12 % (w/v) NaCl (optimum, 8 %) and at 10-40 °C (optimum, 30-35 °C), at pH 7.5-10.5 (optimum, pH 9.0-9.5). It was catalase-positive, but oxidase-negative. Based on the analysis of 16S rRNA gene sequences, DQ-9T was classified into the genus Salipaludibacillus and exhibited the highest similarities (98.37 %) to Salipaludibacillus neizhouensis JSM 071004T. Digital DNA-DNA hybridization and average nucleotide identity values between strain DQ-9T and the most closely related strain, S. neizhouensis DSM 19794T, were determined to be 72.0 and 21.6 %, respectively. The polar lipids were constituted by diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The major fatty acids (>5 %) comprised anteiso-C15 : 0, anteiso-C17 : 0, iso-C17 : 0, iso-C15 : 0 and C16 : 0. The cell-wall peptidoglycan contained meso-diaminopimelic acid, and menaquinone-7 was identified as the primary respiratory quinone. The DNA G+C content was 37.5 mol%. Through chemotaxonomic, physiological, and biochemical characterization, strain DQ-9T could be clearly distinguished from the closest Salipaludibacillus species. Based on provided data, strain DQ-9T is proposed to represent a novel species, Salipaludibacillus daqingensis sp. nov., within the genus Salipaludibacillus. The type strain is DQ-9T (=ACCC 60415T=KCTC 33936T).
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Affiliation(s)
- Liwei Guo
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Jiading Liu
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Qiang Hou
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Baisuo Zhao
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Xiaoxia Zhang
- Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Haisheng Wang
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
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Narsing Rao MP, Wang H, Banerjee A, Xiao M, Li X, Kang YQ, Li WJ. Proposal to transfer Bacillus lacisalsi Dong et al. 2021 to the genus Alteribacter as Alteribacter lacisalsi comb. nov. Int J Syst Evol Microbiol 2022; 72. [DOI: 10.1099/ijsem.0.005502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In the present study, the taxonomic position of
Bacillus lacisalsi
YSP-3T was evaluated using phylogenetic and genome-based comparison.
B. lacisalsi
YSP-3T showed the highest 16S rRNA gene sequence similarity to
Alteribacter natronophilus
M30T (98.4 %), followed by
Alteribacter aurantiacus
K1-5T (97.5 %) and
Alteribacter populi
FJAT-45347T (97.2 %). In phylogenetic (based on 16S rRNA gene sequences) and phylogenomic (based on 71 bacterial single-copy genes) trees,
B. lacisalsi
YSP-3T clustered with the members of the genus
Alteribacter
. The amino acid identity (AAI) values between
B. lacisalsi
YSP-3T and the members of the genus
Alteribacter
were >65 %, which is above the cut-off level (65–95 %) for genus delineation. The average nucleotide identity (ANI) values between
B. lacisalsi
YSP-3T and the members of the genus
Alteribacter
were <95 %, which is lower than the threshold value (95–96 %) for bacterial species delineation. The AAI value suggested that
B. lacisalsi
YSP-3T was a member of the genus
Alteribacter
while the ANIb value suggested it as a novel species of the genus
Alteribacter
. Based on the results, we propose to transfer
Bacillus lacisalsi
to the genus
Alteribacter
as Alteribacter lacisalsi comb. nov.
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Affiliation(s)
- Manik Prabhu Narsing Rao
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
- Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Talent Base of Microbiology and Human Health of Guizhou Province, School of Basic Medical Sciences, Guizhou Medical University, Guiyang, 550025, PR China
| | - Haijie Wang
- Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Talent Base of Microbiology and Human Health of Guizhou Province, School of Basic Medical Sciences, Guizhou Medical University, Guiyang, 550025, PR China
| | - Aparna Banerjee
- Centro de Investigación de Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca, 3466706, Chile
| | - Min Xiao
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - XiaoBin Li
- Guizhou Sunveen Liquor Co., Ltd, Guiyang 550022, PR China
- Guizhou Chishui Riverside Maotai-flavor Liquor Research Center, Guiyang 550003, PR China
| | - Ying-Qian Kang
- Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education, Guizhou Talent Base of Microbiology and Human Health of Guizhou Province, School of Basic Medical Sciences, Guizhou Medical University, Guiyang, 550025, PR China
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
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Liu J, Zhang X, Cao H, Guo L, Zhao B, Zhang X, Wang Y, Wang H. Alteribacter keqinensis sp. nov., a moderately halophilic bacterium isolated from a soda lake. Int J Syst Evol Microbiol 2022; 72. [PMID: 35502996 DOI: 10.1099/ijsem.0.005351] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-positive, aerobic, endospore-forming and rod-shaped bacterium (KQ-3T), which grew at 10-45 °C (optimum 35 °C), pH 8.0-10.5 (optimum pH 9.0) and in the presence of 0-16 % (w/v) NaCl (optimum 3.0 %), was isolated from a soda lake and identified as representing a novel species using a polyphasic taxonomic approach. Strain KQ-3T was catalase-positive, oxidase-negative and non-motile. Phylogenetic analysis based on 16S rRNA gene sequence affiliated KQ-3T to the genus Alteribacter and showed the highest similarities to Alteribacter natronophilus M30T (97.90 %), Alteribacter aurantiacus K1-5T (97.84 %) and Alteribacter populi FJAT-45347T (97.22 %). Digital DNA-DNA hybridization and average nucleotide identity analyses revealed that KQ-3T displayed 21.4 and 72.81% genomic DNA relatedness with the most closely related strain, A. natronophilus M30T, respectively. KQ-3T contained all of the conserved signature indels that are specific for members of the genus Alteribacter. The DNA G+C content was 45.03 mol%. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the polar lipids consisted of phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and one unidentified phospholipid. The predominant menaquinone was MK-7 (100%) and the major fatty acids (>10 %) comprised anteiso-C15 : 0, iso-C15 : 0 and iso-C16 : 0. Based on the data from the current polyphasic studies, KQ-3T represents a novel species of the genus Alteribacter, for which the name Alteribacter keqinensis sp. nov. is proposed. The type strain is KQ-3T (=ACCC 61799T=KCTC 33933T).
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Affiliation(s)
- Jiading Liu
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Xinyu Zhang
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Hao Cao
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Liwei Guo
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Baisuo Zhao
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Xiaoxia Zhang
- Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Yanan Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Haisheng Wang
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
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Oren A, Garrity GM. Valid publication of new names and new combinations effectively published outside the IJSEM. Int J Syst Evol Microbiol 2021; 71. [PMID: 34850678 DOI: 10.1099/ijsem.0.005096] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Affiliation(s)
- Aharon Oren
- The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel
| | - George M Garrity
- Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA
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Baltaci MO, Ay H, Akbulut S, Adiguzel G, Albayrak S, Omeroglu MA, Ozkan H, Taskin M, Adiguzel A. Bacillus pasinlerensis sp. nov., a thermophilic bacterium isolated from a hot spring in Turkey. Int J Syst Evol Microbiol 2020; 70:3865-3871. [PMID: 32496183 DOI: 10.1099/ijsem.0.004246] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-reaction-positive, endospore-forming bacterium, designated strain P1T, was isolated from water samples collected from Pasinler Hot Spring and characterized using a polyphasic approach to clarify its taxonomic position. Strain P1T was found to have chemotaxonomic and morphological characteristics consistent with its classification in the genus Bacillus. The strain shared the highest 16S rRNA gene sequence identity values with Bacillus thermolactis R-6488T (97.6 %) and Bacillus kokeshiiformis MO-04T (97.2 %) and formed a distinct clade with both type strains in the phylogenetic trees based on 16S rRNA gene sequences. Strain P1T could grow optimally at 55 °C and in the presence of 2 % NaCl. The organism was found to contain meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. The predominant menaquinone was determined to be MK-7. The major cellular fatty acids were identified as iso-C15 : 0, iso-C17 : 0 and anteiso-C17 : 0. Based upon the consensus of phenotypic and phylogenetic analyses, strain P1T represents a novel species of the genus Bacillus, for which the name Bacillus pasinlerensis sp. nov. is proposed. The type strain is P1T (=DSM 107529T=CECT 9885T=NCCB 100674T).
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Affiliation(s)
- Mustafa Ozkan Baltaci
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Hilal Ay
- Department of Molecular Biology and Genetics, Faculty of Science and Arts, Ondokuz Mayis University, Samsun, Turkey
| | - Sumeyya Akbulut
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Gulsah Adiguzel
- Department of Food Science and Technology, Faculty of Veterinary Science, Ataturk University, Erzurum, Turkey
| | - Seyda Albayrak
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Mehmet Akif Omeroglu
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Hakan Ozkan
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Mesut Taskin
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
| | - Ahmet Adiguzel
- Department of Molecular Biology and Genetics, Faculty of Science, Ataturk University, Erzurum, Turkey
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