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Liu J, Wu X, Fang Y, Liu Y, Bello EO, Li Y, Xiong R, Li Y, Fu ZQ, Wang A, Cheng X. A plant RNA virus inhibits NPR1 sumoylation and subverts NPR1-mediated plant immunity. Nat Commun 2023; 14:3580. [PMID: 37328517 PMCID: PMC10275998 DOI: 10.1038/s41467-023-39254-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 06/02/2023] [Indexed: 06/18/2023] Open
Abstract
NONEXPRESSER OF PATHOGENESIS-RELATED GENES 1 (NPR1) is the master regulator of salicylic acid-mediated basal and systemic acquired resistance in plants. Here, we report that NPR1 plays a pivotal role in restricting compatible infection by turnip mosaic virus, a member of the largest plant RNA virus genus Potyvirus, and that such resistance is counteracted by NUCLEAR INCLUSION B (NIb), the viral RNA-dependent RNA polymerase. We demonstrate that NIb binds to the SUMO-interacting motif 3 (SIM3) of NPR1 to prevent SUMO3 interaction and sumoylation, while sumoylation of NIb by SUMO3 is not essential but can intensify the NIb-NPR1 interaction. We discover that the interaction also impedes the phosphorylation of NPR1 at Ser11/Ser15. Moreover, we show that targeting NPR1 SIM3 is a conserved ability of NIb from diverse potyviruses. These data reveal a molecular "arms race" by which potyviruses deploy NIb to suppress NPR1-mediated resistance through disrupting NPR1 sumoylation.
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Affiliation(s)
- Jiahui Liu
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Xiaoyun Wu
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
- Key Laboratory of Germplasm Enhancement, Physiology and Ecology of Food Crops in Cold Region of Chinese Education Ministry, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Yue Fang
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Ye Liu
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Esther Oreofe Bello
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Yong Li
- College of Life Science, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China
| | - Ruyi Xiong
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, N5V 4T3, ON, Canada
- A&L Canada Laboratories Lnc., London, N5V 3P5, ON, Canada
| | - Yinzi Li
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, N5V 4T3, ON, Canada
| | - Zheng Qing Fu
- Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA
| | - Aiming Wang
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, N5V 4T3, ON, Canada
| | - Xiaofei Cheng
- College of Plant Protection, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China.
- Key Laboratory of Germplasm Enhancement, Physiology and Ecology of Food Crops in Cold Region of Chinese Education Ministry, Northeast Agricultural University, 150030, Harbin, Heilongjiang, China.
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Samaniego-Gámez BY, Valle-Gough RE, Garruña-Hernández R, Reyes-Ramírez A, Latournerie-Moreno L, Tun-Suárez JM, Villanueva-Alonzo HDJ, Nuñez-Ramírez F, Diaz LC, Samaniego-Gámez SU, Minero-García Y, Hernandez-Zepeda C, Moreno-Valenzuela OA. Induced Systemic Resistance in the Bacillus spp.- Capsicum chinense Jacq.-PepGMV Interaction, Elicited by Defense-Related Gene Expression. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112069. [PMID: 37299048 DOI: 10.3390/plants12112069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 05/13/2023] [Accepted: 05/18/2023] [Indexed: 06/12/2023]
Abstract
Induced systemic resistance (ISR) is a mechanism involved in the plant defense response against pathogens. Certain members of the Bacillus genus are able to promote the ISR by maintaining a healthy photosynthetic apparatus, which prepares the plant for future stress situations. The goal of the present study was to analyze the effect of the inoculation of Bacillus on the expression of genes involved in plant responses to pathogens, as a part of the ISR, during the interaction of Capsicum chinense infected with PepGMV. The effects of the inoculation of the Bacillus strains in pepper plants infected with PepGMV were evaluated by observing the accumulation of viral DNA and the visible symptoms of pepper plants during a time-course experiment in greenhouse and in in vitro experiments. The relative expression of the defense genes CcNPR1, CcPR10, and CcCOI1 were also evaluated. The results showed that the plants inoculated with Bacillus subtilis K47, Bacillus cereus K46, and Bacillus sp. M9 had a reduction in the PepGMV viral titer, and the symptoms in these plants were less severe compared to the plants infected with PepGMV and non-inoculated with Bacillus. Additionally, an increase in the transcript levels of CcNPR1, CcPR10, and CcCOI1 was observed in plants inoculated with Bacillus strains. Our results suggest that the inoculation of Bacillus strains interferes with the viral replication, through the increase in the transcription of pathogenesis-related genes, which is reflected in a lowered plant symptomatology and an improved yield in the greenhouse, regardless of PepGMV infection status.
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Affiliation(s)
- Blancka Yesenia Samaniego-Gámez
- Institute of Agricultural Sciences, Autonomous University of Baja California, Delta Highway s/n Ejido Nuevo León, Mexicali P.O. Box 21705, Baja California, Mexico
| | - Raúl Enrique Valle-Gough
- Institute of Agricultural Sciences, Autonomous University of Baja California, Delta Highway s/n Ejido Nuevo León, Mexicali P.O. Box 21705, Baja California, Mexico
| | - René Garruña-Hernández
- CONACYT-National Technological Institute of Mexico, Technological Institute of Conkal, CONACYT, Tecnológico Ave. s/n, Conkal P.O. Box 97345, Yucatán, Mexico
| | - Arturo Reyes-Ramírez
- National Technological Institute of Mexico, Conkal Institute of Technology, Division of Graduate Studies and Research, Av. Tecnológico s/n, Conkal P.O. Box 97345, Yucatán, Mexico
| | - Luis Latournerie-Moreno
- National Technological Institute of Mexico, Conkal Institute of Technology, Division of Graduate Studies and Research, Av. Tecnológico s/n, Conkal P.O. Box 97345, Yucatán, Mexico
| | - José María Tun-Suárez
- National Technological Institute of Mexico, Conkal Institute of Technology, Division of Graduate Studies and Research, Av. Tecnológico s/n, Conkal P.O. Box 97345, Yucatán, Mexico
| | - Hernán de Jesús Villanueva-Alonzo
- Regional Research Center "Dr. Hideyo Noguchi", Cell Biology Laboratory, Autonomous University of Yucatan, Av. Itzáez, Nmbr. 490 by 59 St. Centro, Merida P.O. Box 97000, Yucatán, Mexico
| | - Fidel Nuñez-Ramírez
- Institute of Agricultural Sciences, Autonomous University of Baja California, Delta Highway s/n Ejido Nuevo León, Mexicali P.O. Box 21705, Baja California, Mexico
| | - Lourdes Cervantes Diaz
- Institute of Agricultural Sciences, Autonomous University of Baja California, Delta Highway s/n Ejido Nuevo León, Mexicali P.O. Box 21705, Baja California, Mexico
| | - Samuel Uriel Samaniego-Gámez
- Institute of Agricultural Sciences, Autonomous University of Baja California, Delta Highway s/n Ejido Nuevo León, Mexicali P.O. Box 21705, Baja California, Mexico
| | - Yereni Minero-García
- Yucatan Center of Scientific Research, Plant Biochemistry and Molecular Biology Unit, 43 St., Nmbr. 130, Chuburna de Hidalgo, Merida P.O. Box 97200, Yucatán, Mexico
| | - Cecilia Hernandez-Zepeda
- Yucatan Center of Scientific Research, Water Sciences Unit, 8 St., Nmbr. 39, SM 64, Mz. 29, Cancun P.O. Box 77500, Quintana Roo, Mexico
| | - Oscar A Moreno-Valenzuela
- Yucatan Center of Scientific Research, Plant Biochemistry and Molecular Biology Unit, 43 St., Nmbr. 130, Chuburna de Hidalgo, Merida P.O. Box 97200, Yucatán, Mexico
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A Method to Produce vsiRNAs in Plants with Cross-Kingdom Gene Silencing Capacity. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12115329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Plants have evolved defense mechanisms to suppress viral transcription and replication by transcriptional and post-transcriptional gene silencing mediated by virus-derived small interfering RNAs (vsiRNAs). Based on this response, virus-induced gene silencing (VIGS)-based technology has been developed to silence target genes on either host plants or insect pests. This mechanism could also be used for the silencing of genes of interest in the medical field. We used the VIGS vector pEuMV-YP:Krt18, which was obtained by inserting the Mus musculus (M. musculus) Krt18 sequence into pEuMV-YP:ΔAV1. The objective was to evaluate the capacity of pEuMV-YP:Krt18 to induce Nicotiana benthamiana (N. benthamiana) production of vsiRNAs of a specific sequence that belongs to neither the plant genome nor the wild virus genome, which were used to induce cross-kingdom gene silencing between plants and mammals. The percentage of vsiRNA for each viral gene was calculated from an sRNA library of N. benthamiana plants infected by pEuMV-YP: Krt18. When the vsiRNAs were characterized, it was found that they corresponded to all the genes of the pEuMV-YP:Krt18 vector. These vsiRNAs induced the silencing of the Krt18 gene in M. musculus macrophages, supporting the ability to use VIGS vectors in plants as biofactories for the production of sRNAs that induce gene silencing in mammals.
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Peng C, Zhang A, Wang Q, Song Y, Zhang M, Ding X, Li Y, Geng Q, Zhu C. Ultrahigh-activity immune inducer from Endophytic Fungi induces tobacco resistance to virus by SA pathway and RNA silencing. BMC PLANT BIOLOGY 2020; 20:169. [PMID: 32293278 PMCID: PMC7160901 DOI: 10.1186/s12870-020-02386-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Accepted: 04/05/2020] [Indexed: 05/07/2023]
Abstract
BACKGROUND Plant viruses cause severe economic losses in agricultural production. An ultrahigh activity plant immune inducer (i.e., ZhiNengCong, ZNC) was extracted from endophytic fungi, and it could promote plant growth and enhance resistance to bacteria. However, the antiviral function has not been studied. Our study aims to evaluate the antiviral molecular mechanisms of ZNC in tobacco. RESULTS Here, we used Potato X virus (PVX), wild-type tobacco and NahG transgenic tobacco as materials to study the resistance of ZNC to virus. ZNC exhibited a high activity in enhancing resistance to viruses and showed optimal use concentration at 100-150 ng/mL. ZNC also induced reactive oxygen species accumulation, increased salicylic acid (SA) content by upregulating the expression of phenylalanine ammonia lyase (PAL) gene and activated SA signaling pathway. We generated transcriptome profiles from ZNC-treated seedlings using RNA sequencing. The first GO term in biological process was positive regulation of post-transcriptional gene silencing, and the subsequent results showed that ZNC promoted RNA silencing. ZNC-sprayed wild-type leaves showed decreased infection areas, whereas ZNC failed to induce a protective effect against PVX in NahG leaves. CONCLUSION All results indicate that ZNC is an ultrahigh-activity immune inducer, and it could enhance tobacco resistance to PVX at low concentration by positively regulating the RNA silencing via SA pathway. The antiviral mechanism of ZNC was first revealed in this study, and this study provides a new antiviral bioagent.
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Affiliation(s)
- Chune Peng
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Ailing Zhang
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Qingbin Wang
- Shandong Pengbo Biotechnology Co., LTD, Tai'an, Shandong, 271018, P.R. China
- National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources; National Engineering & Technology Research Center for Slow and Controlled Release Fertilizers, College of Resources and Environment, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Yunzhi Song
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Min Zhang
- National Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources; National Engineering & Technology Research Center for Slow and Controlled Release Fertilizers, College of Resources and Environment, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Xinhua Ding
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China
| | - Yang Li
- Shandong Pengbo Biotechnology Co., LTD, Tai'an, Shandong, 271018, P.R. China
| | - Quanzheng Geng
- Shandong Pengbo Biotechnology Co., LTD, Tai'an, Shandong, 271018, P.R. China
| | - Changxiang Zhu
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Tai'an, Shandong, 271018, P.R. China.
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Ali S, Ahmad Nasir I, Rafiq M, Javed Butt S, Ihsan F, Qayyum Rao A, Husnain T. Sugarcane Mosaic Virus-Based Gene Silencing in Nicotiana benthamiana. IRANIAN JOURNAL OF BIOTECHNOLOGY 2017; 15:260-267. [PMID: 29845078 PMCID: PMC5903913 DOI: 10.15171/ijb.1536] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Revised: 02/14/2017] [Accepted: 07/27/2017] [Indexed: 06/08/2023]
Abstract
Background: Potyvirus-based virus-induced gene silencing (VIGS) is used for knocking down the expression of a target gene in numerous plant species. Sugarcane mosaic virus (SCMV) is a monopartite, positive single strand RNA virus. Objectives: pBINTRA6 vector was modifi ed by inserting a gene segment of SCMV in place of Tobacco rattle virus (TRV) genome part 1 (TRV1 or RNA1) and the two nonstructural proteins of TRV2(RNA2). Materials and Methods: SCMV construct was inoculated into 3-4 weeks Nicotiana benthamiana plant leaves either by using a needleless syringe or applying pricking with a toothpick. Results: The construct (SCMV-RNA2) successfully induced post-transcriptional gene silencing (PTGS) of the target genes GFP and ChlI through agroinoculation proving that SCMV is a substitute of the RNA1, which plays a pivotal role in the systemic gene silencing. 2-3-weeks of post inoculation, target genes' silencing was observed in the newly developed noninoculated leaves. Conclusions: The newly developed construct expresses the knocked down of the endogenous as well as exogenous genes and only four weeks are required for the transient expression of the gene silencing based on SCMV-VIGS system.
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Affiliation(s)
- Sajed Ali
- Department of Biotechnology, School of Sciences, University of Management and Technology, Sialkot Campus, Sialkot, Pakistan
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Idrees Ahmad Nasir
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Muhammad Rafiq
- Institute of Clinical Psychology, University of Management and Technology, Lahore, Pakistan
| | - Shahid Javed Butt
- Department of Biotechnology, School of Sciences, University of Management and Technology, Sialkot Campus, Sialkot, Pakistan
| | - Farooq Ihsan
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Abdul Qayyum Rao
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Tayyab Husnain
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
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Expression of genes involved in the salicylic acid pathway in type h1 thioredoxin transiently silenced pepper plants during a begomovirus compatible interaction. Mol Genet Genomics 2015; 291:819-30. [PMID: 26606929 DOI: 10.1007/s00438-015-1148-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Accepted: 11/13/2015] [Indexed: 12/31/2022]
Abstract
The type-h thioredoxins (TRXs) play a fundamental role in oxidative stress tolerance and defense responses against pathogens. In pepper plants, type-h TRXs participate in the defense mechanism against Cucumber mosaic virus. The goal of this study was to analyze the role of the CaTRXh1-cicy gene in pepper plants during compatible interaction with a DNA virus, the Euphorbia mosaic virus-Yucatan Peninsula (EuMV-YP). The effects of a transient silencing of the CaTRXh1-cicy gene in pepper plants wëre evaluated by observing the accumulation of viral DNA and the visible symptoms of pepper plants under different treatments. The accumulation of salicylic acid (SA) and the relative expression of the defense genes NPR1 and PR10 were also evaluated. Results showed that viral DNA accumulation was higher in transiently CaTRXh1-cicy silenced plants that were also infected with EuMV-YP. Symptoms in these plants were more severe compared to the non-silenced plants infected with EuMV-YP. The SA levels in the EuMV-YP-infected plants were rapidly induced at 1 h post infection (hpi) in comparison to the non-silenced plants inoculated with EuMV-YP. Additionally, in pepper plants infected with EuMV-YP, the expression of NPR1 decreased by up to 41 and 58 % at 28 days post infection (dpi) compared to the non-silenced pepper plants infected with only EuMV-YP and healthy non-inoculated pepper plants, respectively. PR10 gene expression decreased by up to 70 % at 28 dpi. Overall, the results indicate that the CaTRXh1-cicy gene participates in defense mechanisms during the compatible interaction of pepper plants with the EuMV-YP DNA virus.
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