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Zhou M, Li Y, Cai Y, Sun Y, Chen W, Wang J, Shen F, Zhan Y, Ying J, Chen S. Development of an Inosine Hyperproducer from Bacillus licheniformis by Systems Metabolic Engineering. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:20210-20221. [PMID: 38079219 DOI: 10.1021/acs.jafc.3c07715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Inosine is widely used in food, chemical, and medicine. This study developed Bacillus licheniformis into an inosine hyperproducer through systems metabolic engineering. First, purine metabolism was activated by deleting inhibitors PurR and YabJ and overexpressing the pur operon. Then, the 5-phosphoribosyl-1-pyrophosphate (PRPP) supply was increased by optimizing the glucose transport system and pentose phosphate pathway, increasing the inosine titer by 97% and decreasing the titers of byproducts by 36%. Next, to prevent the degradation of inosine, genes deoD and pupG coding purine nucleoside phosphorylase were deleted, accumulating 0.91 g/L inosine in the culture medium. Additionally, the downregulation of adenosine 5'-monophosphate (AMP) synthesis pathway increased the inosine titer by 409%. Importantly, enhancing the glycine and aspartate supply increased the inosine titer by 298%. Finally, the guanosine synthesis pathway was blocked, leading to strain IR-8-2 producing 27.41 g/L inosine with a 0.46 g inosine/g glucose yield and a 0.38 g/(L·h) productivity in a shake flask.
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Affiliation(s)
- Menglin Zhou
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Yi Li
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Youhua Cai
- Star Lake Bioscience Co. Inc, Zhaoging, Zhaoging, Guangdong 526000, PR China
| | - Yaqi Sun
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Wu Chen
- Star Lake Bioscience Co. Inc, Zhaoging, Zhaoging, Guangdong 526000, PR China
| | - Jin Wang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Feng Shen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Yangyang Zhan
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
| | - Jun Ying
- Star Lake Bioscience Co. Inc, Zhaoging, Zhaoging, Guangdong 526000, PR China
| | - Shouwen Chen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan 430062, PR China
- Key Laboratory of Green Chemical Technology of Fujian Province University, College of Ecological and Resource Engineering, Wuyi University, Wuyishan 354300, PR China
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Deng A, Qiu Q, Sun Q, Chen Z, Wang J, Zhang Y, Liu S, Wen T. In silico-guided metabolic engineering of Bacillus subtilis for efficient biosynthesis of purine nucleosides by blocking the key backflow nodes. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2022; 15:82. [PMID: 35953809 PMCID: PMC9367096 DOI: 10.1186/s13068-022-02179-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 07/29/2022] [Indexed: 11/10/2022]
Abstract
Abstract
Background
Purine nucleosides play essential roles in cellular physiological processes and have a wide range of applications in the fields of antitumor/antiviral drugs and food. However, microbial overproduction of purine nucleosides by de novo metabolic engineering remains a great challenge due to their strict and complex regulatory machinery involved in biosynthetic pathways.
Results
In this study, we designed an in silico-guided strategy for overproducing purine nucleosides based on a genome-scale metabolic network model in Bacillus subtilis. The metabolic flux was analyzed to predict two key backflow nodes, Drm (purine nucleotides toward PPP) and YwjH (PPP–EMP), to resolve the competitive relationship between biomass and purine nucleotide synthesis. In terms of the purine synthesis pathway, the first backflow node Drm was inactivated to block the degradation of purine nucleotides, which greatly increased the inosine production to 13.98–14.47 g/L without affecting cell growth. Furthermore, releasing feedback inhibition of the purine operon by promoter replacement enhanced the accumulation of purine nucleotides. In terms of the central carbon metabolic pathways, the deletion of the second backflow node YwjH and overexpression of Zwf were combined to increase inosine production to 22.01 ± 1.18 g/L by enhancing the metabolic flow of PPP. By switching on the flux node of the glucose-6-phosphate to PPP or EMP, the final inosine engineered strain produced up to 25.81 ± 1.23 g/L inosine by a pgi-based metabolic switch with a yield of 0.126 mol/mol glucose, a productivity of 0.358 g/L/h and a synthesis rate of 0.088 mmol/gDW/h, representing the highest yield in de novo engineered inosine bacteria. Under the guidance of this in silico-designed strategy, a general chassis bacterium was generated, for the first time, to efficiently synthesize inosine, adenosine, guanosine, IMP and GMP, which provides sufficient precursors for the synthesis of various purine intermediates.
Conclusions
Our study reveals that in silico-guided metabolic engineering successfully optimized the purine synthesis pathway by exploring efficient targets, which could be applied as a superior strategy for efficient biosynthesis of biotechnological products.
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Production of proteins and commodity chemicals using engineered Bacillus subtilis platform strain. Essays Biochem 2021; 65:173-185. [PMID: 34028523 DOI: 10.1042/ebc20210011] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 05/02/2021] [Accepted: 05/06/2021] [Indexed: 12/19/2022]
Abstract
Currently, increasing demand of biochemicals produced from renewable resources has motivated researchers to seek microbial production strategies instead of traditional chemical methods. As a microbial platform, Bacillus subtilis possesses many advantages including the generally recognized safe status, clear metabolic networks, short growth cycle, mature genetic editing methods and efficient protein secretion systems. Engineered B. subtilis strains are being increasingly used in laboratory research and in industry for the production of valuable proteins and other chemicals. In this review, we first describe the recent advances of bioinformatics strategies during the research and applications of B. subtilis. Secondly, the applications of B. subtilis in enzymes and recombinant proteins production are summarized. Further, the recent progress in employing metabolic engineering and synthetic biology strategies in B. subtilis platform strain to produce commodity chemicals is systematically introduced and compared. Finally, the major limitations for the further development of B. subtilis platform strain and possible future directions for its research are also discussed.
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Wang X, Ma J, Xu N, Wang Y, Sun J, Liu G. Three Zn( ii) coordination polymers constructed with a new amide-thiophene-derived bis-pyridyl ligand as ultrasensitive luminescent sensors for Hg( ii) and purines. CrystEngComm 2021. [DOI: 10.1039/d1ce00527h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
A new amide-thiophene-derived ligand (4-bpft) was designed and used to construct three LCPs 1–3, which could detect Hg(ii), adenine, and guanine.
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Affiliation(s)
- Xiuli Wang
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
| | - Jianxin Ma
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
| | - Na Xu
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
| | - Yue Wang
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
| | - Jiayu Sun
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
| | - Guocheng Liu
- College of Chemistry and Materials Engineering
- Bohai University
- Professional Technology Innovation Center of Liaoning Province for Conversion Materials of Solar Cell
- Jinzhou 121013
- P. R. China
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Adenine as Epoxy Resin Hardener for Sustainable Composites Production with Recycled Carbon Fibers and Cellulosic Fibers. Polymers (Basel) 2020; 12:polym12123054. [PMID: 33419353 PMCID: PMC7766952 DOI: 10.3390/polym12123054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 12/16/2020] [Accepted: 12/17/2020] [Indexed: 12/03/2022] Open
Abstract
In this work, Adenine is proposed, for the first time, as a cross-linker for epoxy resins. Adenine is an amino-substituted purine with heterocyclic aromatic structure showing both proton donors, and hydrogen bonding ability. DSC studies show that adenine is able to positively cross-link a biobased DGEBA-like commercial epoxy precursor with good thermal performance and a reaction mechanism based on a 1H NMR investigation has been proposed. The use of such a formulation to produce composite with recycled short carbon fibers (and virgin ones for the sake of comparison), as well as jute and linen natural fibers as sustainable reinforcements, leads to materials with high compaction and fiber content. The curing cycle was optimized for both carbon fiber and natural fiber reinforced materials, with the aim to achieve the better final properties. All composites produced display good thermal and mechanical properties with glass transition in the range of HT resins (Tg > 150 °C, E’ =26 GPa) for the carbon fiber-based composites. The natural fiber-based composites display slightly lower performance that is nonetheless good compared with standard composite performance (Tg about 115–120 °C, E’ = 7–9 GPa). The present results thus pave the way to the application of adenine as hardener system for composites production.
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Expression and purification of the 5'-nucleotidase YitU from Bacillus species: its enzymatic properties and possible applications in biotechnology. Appl Microbiol Biotechnol 2020; 104:2957-2972. [PMID: 32040605 PMCID: PMC7062661 DOI: 10.1007/s00253-020-10428-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 01/17/2020] [Accepted: 02/03/2020] [Indexed: 11/05/2022]
Abstract
5’-Nucleotidases (EC 3.1.3.5) are enzymes that catalyze the hydrolytic dephosphorylation of 5′-ribonucleotides and 5′-deoxyribonucleotides to their corresponding nucleosides plus phosphate. In the present study, to search for new genes encoding 5′-nucleotidases specific for purine nucleotides in industrially important Bacillus species, “shotgun” cloning and the direct selection of recombinant clones grown in purine nucleosides at inhibitory concentrations were performed in the Escherichia coli GS72 strain, which is sensitive to these compounds. As a result, orthologous yitU genes from Bacillus subtilis and Bacillus amyloliquefaciens, whose products belong to the ubiquitous haloacid dehalogenase superfamily (HADSF), were selected and found to have a high sequence similarity of 87%. B. subtilis YitU was produced in E. coli as an N-terminal hexahistidine-tagged protein, purified and biochemically characterized as a soluble 5′-nucleotidase with broad substrate specificity with respect to various deoxyribo- and ribonucleoside monophosphates: dAMP, GMP, dGMP, CMP, AMP, XMP, IMP and 5-aminoimidazole-4-carboxamide-1-β-d-ribofuranosyl 5′-monophosphate (AICAR-P). However, the preferred substrate for recombinant YitU was shown to be flavin mononucleotide (FMN). B. subtilis and B. amyloliquefaciens yitU overexpression increased riboflavin (RF) and 5-aminoimidazole-4-carboxamide ribonucleoside (AICAR) accumulation and can be applied to breed highly performing RF- and AICAR-producing strains.
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A prospective partial bio-based diamine-adenine-monomer platform for high performance polymer: A case study on phthalonitrile resin. Polym Degrad Stab 2019. [DOI: 10.1016/j.polymdegradstab.2019.06.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Li B, Yan ZY, Liu XN, Zhou J, Wu XY, Wei P, Jia HH, Yong XY. Increased fermentative adenosine production by gene-targeted Bacillus subtilis mutation. J Biotechnol 2019; 298:1-4. [PMID: 30974118 DOI: 10.1016/j.jbiotec.2019.04.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 03/14/2019] [Accepted: 04/06/2019] [Indexed: 11/17/2022]
Abstract
Adenosine, which is produced mainly by microbial fermentation, plays an important role in the therapy of cardiovascular disease and has been widely used as an antiarrhythmic agent. In this study, guanosine 5'-monophosphate (GMP) synthetase gene (guaA) was inactivated by gene-target manipulation to increase the metabolic flux from inosine 5'-monophosphate (IMP) to adenosine in B. subtilis A509. The resulted mutant M3-3 showed an increased adenosine production from 7.40 to 10.45 g/L, which was further enhanced to a maximum of 14.39 g/L by central composite design. As the synthesis of succinyladenosine monophosphate (sAMP) from IMP catalysed by adenylosuccinate synthetase (encoded by purA gene) is the rate-limiting step in adenosine synthesis, the up-regulated transcription level of purA was the potential underlying mechanism for the increased adenosine production. This work demonstrated a practical strategy for breeding B. subtilis strains for industrial nucleoside production.
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Affiliation(s)
- Biao Li
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China
| | - Zhi-Ying Yan
- Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Science, Chengdu, 610041, China
| | - Xiao-Na Liu
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China
| | - Jun Zhou
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China; Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing, 211816, China; Jiangsu Synergetic Innovation Center for Advanced Bio-Manufacture, Nanjing, 211816, China
| | - Xia-Yuan Wu
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China; Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing, 211816, China; Jiangsu Synergetic Innovation Center for Advanced Bio-Manufacture, Nanjing, 211816, China
| | - Ping Wei
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China; Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing, 211816, China; Jiangsu Synergetic Innovation Center for Advanced Bio-Manufacture, Nanjing, 211816, China
| | - Hong-Hua Jia
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China; Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing, 211816, China; Jiangsu Synergetic Innovation Center for Advanced Bio-Manufacture, Nanjing, 211816, China
| | - Xiao-Yu Yong
- College of Biotechnology and Pharmaceutical Engineering, Bioenergy Research Institute, Nanjing Tech University, Nanjing, 211816, China; Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing, 211816, China; Jiangsu Synergetic Innovation Center for Advanced Bio-Manufacture, Nanjing, 211816, China.
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Hu J, Wang Z, Lu Z, Chen C, Shi M, Wang J, Zhao E, Zeng K, Yang G. Bio-based adenine-containing high performance polyimide. POLYMER 2017. [DOI: 10.1016/j.polymer.2017.05.012] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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