Kinetic analysis of the inhibitory effect of trichloroethylene (TCE) on nitrification in cometabolic degradation

Nitrification activity in the presence of 2-chlorophenol using whole nitrifying cells and cell-free extracts: batch and SBR assays

Kinetic assays with a nitrifying consortium with whole nitrifying cells amended with 5 mg 2-CP-C/L and 100, 200, 300, or 500 mg NH4+-N/L were carried out in batch and nitrifying sequencing batch reactor (SBR) cultures. No nitrification activity was observed in batch assays with 100 mg NH4+-N/L and 5 mg 2-CP-C/L. Nevertheless, increasing the ammonium concentration from 200 to 500 mg NH4+-N/L allowed simultaneous ammonium and nitrite oxidation even in the presence of 5 mg 2-CP-C/L plus the halogenated compound consumption. Under these conditions, the ammonium monooxygenase enzyme participated in 2-CP consumption. Complete nitrification and simultaneous elimination of 5 mg 2-CP-C/L were achieved in the SBR amended with 200-500 mg NH4+-N/L. The inhibitory effect of 2-CP on the nitrite oxidation process completely disappeared under these conditions. Assays with nitrifying cell-free extracts, ammonium (100 mg NH4+-N/L), and 2-CP (5 mg 2-CP-C/L) were also conducted. In the absence of 2-CP, the nitrifying cell-free extracts maintained up to 60% of the nitrifying activity compared to whole-cells. Contrary to whole-cell assays, cell-free extracts were capable of simultaneously oxidizing ammonium and consuming 2-CP. However, the inhibitory effect of 2-CP on nitrification was still present as lower specific rates of ammonium consumption and nitrate production were obtained. Thus, these assays indicate that the presence of 2-CP affects both, the ammonium transport mechanism and the activity of nitrifying enzymes.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13205-023-03764-z.

Predicting the occurrence of monooxygenases and their associated phylotypes in soil microcosms

Cometabolic oxidation involves the oxidation of chemicals often by monooxygenases or dioxygenases and can be a removal process for environmental contaminants such as trichloroethene (TCE) or 1,4-dioxane. Information on the occurrence of these genes and their associated microorganisms in environmental samples has the potential to enhance our understanding of contaminant removal. The overall aims were to 1) ascertain which genes encoding for monooxygenases (from methanotrophs, ammonia oxidizing bacteria and toluene/phenol oxidizers) and other key enzymes are present in soil microcosms and 2) determine which phylotypes are associated with those genes. The approach involved a predictive tool called PICRUSt2 and 16S rRNA gene amplicon datasets from two previous soil microcosm studies. The following targets from the KEGG database were examined: pmo/amo, mmo, dmp/pox/tomA, tmo/tbu/tou, bssABC (and downstream genes), tod, xylM, xylA, gst, dhaA, catE, dbfA1, dbfA2 and phenol 2-monooxygenase. A large number of phylotypes were associated with pmo/amo, while mmo was linked to only five. Several phylotypes were associated with both pmo/amo and mmo. The most dominant microorganism predicted for mmoX was Mycobacterium (also predicted for pmo/amo). A large number of phylotypes were associated with all six genes from the dmp/pox/tomA KEGG group. The taxonomic associations predicted for the tmo/tbu/tou KEGG group were more limited. In both datasets, Geobacter was a key phylotype for benzylsuccinate synthase. The dioxygenase-mediated toluene degradation pathway encoded by todC1C2BA was largely absent, as were the genes (xylM, xylA) encoding for xylene monooxygenase. All other genes investigated were predicted to be present and were associated with a number of microorganisms. Overall, the analysis predicted the genes encoding for sMMO (mmo), T3MO/T3MO/ToMO (tmo/tbu/tou) and benzylsuccinate synthase (bssABC) are present for a limited number of phylotypes compared to those encoding for pMMO/AMO (pmo/amo) and phenol monooxygenase/T2MO (dmp/poxA/tomA). These findings suggest in soils contaminant removal via pMMO/AMO or phenol monooxygenase/T2MO may be common because of the occurrence of these enzymes with a large number of phylotypes.

2-Chlorophenol consumption by cometabolism in nitrifying SBR reactors

Cometabolic consumption of 2-chlorophenol (2-CP) by a nitrifying sludge was evaluated in two SBR reactors fed with 60 mg 2-CP-C/L and different initial ammonium concentrations (100, 200, 300, 400, and 500 mg NH₄⁺-N/L). Irrespectively to the increase in ammonium concentration and throughout the operational cycles, the sludge achieved a complete nitrification in 14 days, accounting for ammonium consumption efficiencies close to 99% and nitrate production yields between 0.93 and 0.99. The sludge was able to completely consume 2-CP within 7 days. The increase in ammonium concentration provoked an increment in the specific rates of both ammonium (qNH₄⁺-N) and 2-CP (q2-CP-C) consumption up to 5.2 and 3.1 times, respectively. The cometabolic effect of the increase in ammonium concentration on 2-CP consumption was supported by a direct and significant relationship between the qNH₄⁺-N and q2-CP-C (r = 0.83). Moreover, batch assays conducted with ammonium, 2-CP, allylthiourea as specific inhibitor of the ammonium monooxygenase (AMO) enzyme, and the sludge inoculated into the reactors, resulted in a decrease of 34% in q2-CP-C, evidencing the participation of the AMO in the consumption of 2-CP. When the same assays were carried out with the sludge obtained from the SBR reactors after 13 operating cycles, a higher participation of the AMO in 2-CP consumption was noticed with a decrease of 53% in q2-CP-C. According to these results, the use of nitrifying sludge and high ammonium concentrations in SBR systems can be a suitable alternative for increasing the cometabolic consumption of recalcitrant compounds like 2-CP.

Enhancement of TCE removal by a static magnetic field in a fungal biotrickling filter

A fungal biotrickling filter (BTF) was employed to treat trichloroethylene (TCE) gas under different magnetic field intensities (MFIs). When the TCE inlet concentrations were approximately 370, 500-900, and 1000 mg/m³, the removal performances followed the order: MFI 20.0 mT > MFI 60.0 mT > MFI 80.0 mT > MFI 0 mT. In particular, at a TCE inlet concentration of 1000 mg/m³, MFI 20.0 mT was significantly better than MFI 0 mT performance. The corresponding removal efficiencies and maximum elimination capacities were 52.9%, 4854.1 mg/m³ h and 39.4%, 3594.8 mg/m³ h, respectively. BTF was shut down completely for 7 days and rapidly recovered in 6-10 days. High-throughput sequencing indicated that MF significantly affected the fungal community and significantly improved the relative abundance of the phylum Ascomycota, achieving the highest abundance of Ascomycota at MFI 20.0. These results indicated that a lower MFI can efficiently improve TCE removal performance in a fungal BTF.

Effect of static magnetic field on trichloroethylene removal in a biotrickling filter

A laboratory-scale biotrickling filter combined with a magnetic field (MF-BTF) and a single BTF (S-BTF) were set up to treat trichloroethylene (TCE) gas. The influences of phenol alone and NaAc-phenol as co-substrates and different MF intensities were investigated. At low MF intensity, MF-BTF displayed better performance with 0.20g/L of phenol, 53.6-337.1mg/m³ of TCE, and empty bed residence times of 202.5s. The performances followed the order MF-BTF (60.0mT)>MF-BTF (30.0mT)>S-BTF (0mT)>MF-BTF (130.0mT), and the removal efficiencies (REs) and maximum elimination capacities (ECs) corresponded to: 92.2%-45.5%, 2656.8mg/m³h; 89.8%-37.2%, 2169.1mg/m³h; 89.8%-29.8%, 1967.7mg/m³h; 76.0%-20.8%, 1697.1mg/m³h, respectively. High-throughput sequencing indicated that the bacterial diversity was lower, whereas the relative abundances of Acinetobacter, Chryseobacterium, and Acidovorax were higher in MF-BTF. Results confirmed that a proper MF could improve TCE removal performance in BTF.

Natural attenuation potential of tricholoroethene in wetland plant roots: role of native ammonium-oxidizing microorganisms

Bench-scale microcosms with wetland plant roots were investigated to characterize the microbial contributions to contaminant degradation of trichloroethene (TCE) with ammonium. The batch system microcosms consisted of a known mass of wetland plant roots in aerobic growth media where the roots provided both an inoculum of root-associated ammonium-oxidizing microorganisms and a microbial habitat. Aqueous growth media, ammonium, and TCE were replaced weekly in batch microcosms while retaining roots and root-associated biomass. Molecular biology results indicated that ammonium-oxidizing bacteria (AOB) were enriched from wetland plant roots while analysis of contaminant and oxygen concentrations showed that those microorganisms can degrade TCE by aerobic cometabolism. Cometabolism of TCE, at 29 and 46 μg L(-1), was sustainable over the course of 9 weeks, with 20-30 mg L(-1) ammonium-N. However, at 69 μg L(-1) of TCE, ammonium oxidation and TCE cometabolism were completely deactivated in two weeks. This indicated that between 46 and 69 μg L(-1) TCE with 30 mg L(-1) ammonium-N there is a threshold [TCE] below which sustainable cometabolism can be maintained with ammonium as the primary substrate. However, cometabolism-induced microbial deactivation of ammonium oxidation and TCE degradation at 69 μg L(-1) TCE did not result in a lower abundance of the amoA gene in the microcosms, suggesting that the capacity to recover from TCE inhibition was still intact, given time and removal of stress. Our study indicates that microorganisms associated with wetland plant roots can assist in the natural attenuation of TCE in contaminated aquatic environments, such as urban or treatment wetlands, and wetlands impacted by industrial solvents.

Trichloroethylene aerobic cometabolism by suspended and immobilized butane-growing microbial consortia: a kinetic study

A kinetic study of butane uptake and trichloroethylene (TCE) aerobic cometabolism was conducted by two suspended-cell (15 and 30°C) and two attached-cell (15 and 30°C) consortia obtained from the indigenous biomass of a TCE-contaminated aquifer. The shift from suspended to attached cells resulted in an increase of butane (15 and 30°C) and TCE (15°C) biodegradation rates, and a significant decrease of butane inhibition on TCE biodegradation. The TCE 15°C maximum specific biodegradation rate was equal to 0.011 mg(TCE ) mg(protein)(-1) d(-1) with suspended cells and 0.021 mg(TCE) mg(protein)(-1) d(-1) with attached cells. The type of mutual butane/TCE inhibition depended on temperature and biomass conditions. On the basis of a continuous-flow simulation, a packed-bed PFR inoculated with the 15 or 30°C attached-cell consortium could attain a 99.96% conversion of the studied site's average TCE concentration with a 0.4-0.5-day hydraulic residence time, with a low effect of temperature on the TCE degradation performances.

Biotrickling filtration of complex pharmaceutical VOC emissions along with chloroform

Biodegradation of chloroform along with a mixture of VOCs (methanol, ethanol, acetone and toluene) commonly found in pharmaceutical emissions using a biotrickling filter (BTF) was evaluated. The performance of the BTF was evaluated for both steady and transient conditions, for different inlet loading rates (ILR), empty bed residence time (EBRT) and inlet chloroform concentrations. Among the VOCs studied before chloroform feeding, toluene removal was the least, under all the operating conditions. Complete removal of all pollutants was achieved up to a chloroform loading rate of 14.22 g/m(3)/h. Increase in loading rate of chloroform adversely affected the removal efficiency of toluene and declined the overall performance of BTF. The results suggest that biodegradation of VOCs is influenced by the inlet loading rate and complexity of pollutants in the inlet air stream. Results from studies on shock loading and starvation indicated that the system was highly resilient to transient operating conditions.

Substrate inhibition during bio-filtration of TCE using diazotrophic bacterial community

The kinetics of biodegradation of TCE in the biofilter packed with wood charcoal and inoculated with diazotrophic bacterial community had been investigated. Use of Michaelis-Menten type model showed that substrate inhibition was present in the system. The kinetic model proposed by Edwards (1970) was used to calculate kinetic parameters-maximum elimination capacity (EC(max)), substrate constant (K(s)), and inhibition constant (K(I)). The model fitted well with the experimental data and the EC(max) was found to be in the range of 10.8-6.1 g/m(3) h. The K(s) values depended upon substrate concentration and ranged from 0.024 to 0.043 g/m(3) indicating the high affinity of diazotrophs for TCE. The K(I) values were low and nearly constant (0.011-0.015 g/m(3)) indicating a moderate substrate inhibition.

Cometabolic degradation and inhibition kinetics of 1,2-dichloroethane (1,2-DCA) in suspended-growth nitrifying systems

Cometabolic degradation of 1,2-dichloroethane (1,2-DCA) and its inhibitory impact on nitrification were investigated by the use of a mixed suspended-growth culture enriched for nitrifiers. 1,2-DCA was found to be cometabolically degradable by the nitrifier culture. This degradation rate was found to be dependent on the initial 1,2-DCA level. The first-order 1,2-DCA degradation rate constants ranged between 0.42 and 0.87 L (g VSS)(-1) h(-1). Increase in NH4-N utilization favoured cometabolic degradation of 1,2-DCA. The amount of 1,2-DCA degraded per unit mass of NH4-N strongly correlated with initial NH4-N and 1,2-DCA concentrations, ranging between 50 mg L(-1) and 200 mg L(-1) and 1600 microg L(-1) and 100,000 microg L(-1), respectively. The presence of 1,2-DCA caused inhibition of oxygen uptake and NH4-N utilization. In spite of the adverse effect of 1,2-DCA on the nitrifying biomass, the system had a high capacity for cometabolic removal of this compound even at inhibitory concentrations. 1,2-DCA had mainly mixed inhibitor characteristics, but at low concentrations (< 25,000 microg/L) it acted rather as a competitive inhibitor. The inhibition constants belonging to 1,2-DCA, K(ic) (the dissociation constant of the enzyme-inhibitory compound complex) and K(iu) (the dissociation constant of the enzyme-substrate-inhibitory compound complex) were determined to be 6000-8000 microg L(-1) and 188,000-200,000 microg L(-1), respectively.

Nitrification and degradation of halogenated hydrocarbons--a tenuous balance for ammonia-oxidizing bacteria

The process of nitrification has the potential for the in situ bioremediation of halogenated compounds provided a number of challenges can be overcome. In nitrification, the microbial process where ammonia is oxidized to nitrate, ammonia-oxidizing bacteria (AOB) are key players and are capable of carrying out the biodegradation of recalcitrant halogenated compounds. Through industrial uses, halogenated compounds often find their way into wastewater, contaminating the environment and bodies of water that supply drinking water. In the reclamation of wastewater, halogenated compounds can be degraded by AOB but can also be detrimental to the process of nitrification. This minireview considers the ability of AOB to carry out cometabolism of halogenated compounds and the consequent inhibition of nitrification. Possible cometabolism monitoring methods that were derived from current information about AOB genomes are also discussed. AOB expression microarrays have detected mRNA of genes that are expressed at higher levels during stress and are deemed "sentinel" genes. Promoters of selected "sentinel" genes have been cloned and used to drive the expression of gene-reporter constructs. The latter are being tested as early warning biosensors of cometabolism-induced damage in Nitrosomonas europaea with promising results. These and other biosensors may help to preserve the tenuous balance that exists when nitrification occurs in waste streams containing alternative AOB substrates such as halogenated hydrocarbons.

Biological removal of the xenobiotic trichloroethylene (TCE) through cometabolism in nitrifying systems

In the present study, cometabolic TCE degradation was evaluated using NH(4)-N as the growth-substrate. At initial TCE concentrations up to 845 microg/L, TCE degradation followed first-order kinetics. The increase in ammonium utilization rate favored the degradation of TCE. This ensured that biological transformation of TCE in nitrifying systems is accomplished through a cometabolic pathway by the catalysis of non-specific ammonia oxygenase enzyme of nitrifiers. The transformation yield (T(y)) of TCE, the amount of TCE degraded per unit mass of NH(4)-N, strongly depended on the initial NH(4)-N and TCE concentrations. In order to allow a rough estimation of TCE removal and nitrification at different influent TCE and NH(4)-N concentrations, a linear relationship was developed between 1/T(y) and the initial NH(4)-N/TCE ratio. The estimated T(y) values lead to the conclusion that nitrifying systems are promising candidates for biological removal of TCE through cometabolism.

Bio-removal of mixture of benzene, toluene, ethylbenzene, and xylenes/total petroleum hydrocarbons/trichloroethylene from contaminated water

Four pure cultures were isolated from soil samples potentially contaminated with gasoline compounds either at a construction site near a gas station in Fai Chi Kei, Macau SAR or in the northern parts of China (Beijing, and Hebei and Shandong). The effects of different concentrations of benzene, toluene, ethylbenzene, and three isomers (ortho-, meta-, and para-) of xylene (BTEX), total petroleum hydrocarbons (TPH), and trichloroethylene (TCE), when they were present in mixtures, on the bio-removal efficiencies of microbial isolates were investigated, together with their interactions during the bio-removal process. When the isolates were tested for the BTEX (50-350 mg/L)/TPH (2000 mg/L) mixture, BTEoX in BTEoX/TPH mixture was shown with higher bio-removal efficiencies, while BTEmX in BTEmX/TPH mixture was shown with the lowest, regardless of isolates. The TPH in BTEmX/TPH mixture, on the other hand, were generally shown with higher bio-removal efficiencies compared to when TPH mixed with BTEoX and BTEpX. When these BTEX mixtures (at 350 mg/L) were present with TCE (5-50 mg/L), the stimulatory effect of TCE toward BTEoX bio-removal was observed for BTEoX/TCE mixture, while the inhibitory effect of TCE toward BTEmX for BTEmX/TCE mixture. The bio-removal efficiency for TPH was shown lower in TPH (2000 mg/L)/TCE (5-50 mg/L) mixtures compared to TPH present alone, implying the inhibitory effect of TCE toward TPH bio-removal. For the mixture of BTEX (417 mg/L), TPH (2000 mg/L) along with TCE (5-50 mg/L), TCE was shown co-metabolically removed more efficiently at 15 mg/L, probably utilizing BTEX and/or TPH as primary substrates.