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Nagabhushan Kalburgi S, Kleinert T, Aryan D, Nash K, Schiller B, Koenig T. MICROSTATELAB: The EEGLAB Toolbox for Resting-State Microstate Analysis. Brain Topogr 2024; 37:621-645. [PMID: 37697212 PMCID: PMC11199309 DOI: 10.1007/s10548-023-01003-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 08/22/2023] [Indexed: 09/13/2023]
Abstract
Microstate analysis is a multivariate method that enables investigations of the temporal dynamics of large-scale neural networks in EEG recordings of human brain activity. To meet the enormously increasing interest in this approach, we provide a thoroughly updated version of the first open source EEGLAB toolbox for the standardized identification, visualization, and quantification of microstates in resting-state EEG data. The toolbox allows scientists to (i) identify individual, mean, and grand mean microstate maps using topographical clustering approaches, (ii) check data quality and detect outlier maps, (iii) visualize, sort, and label individual, mean, and grand mean microstate maps according to published maps, (iv) compare topographical similarities of group and grand mean microstate maps and quantify shared variances, (v) obtain the temporal dynamics of the microstate classes in individual EEGs, (vi) export quantifications of these temporal dynamics of the microstates for statistical tests, and finally, (vii) test for topographical differences between groups and conditions using topographic analysis of variance (TANOVA). Here, we introduce the toolbox in a step-by-step tutorial, using a sample dataset of 34 resting-state EEG recordings that are publicly available to follow along with this tutorial. The goals of this manuscript are (a) to provide a standardized, freely available toolbox for resting-state microstate analysis to the scientific community, (b) to allow researchers to use best practices for microstate analysis by following a step-by-step tutorial, and (c) to improve the methodological standards of microstate research by providing previously unavailable functions and recommendations on critical decisions required in microstate analyses.
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Affiliation(s)
| | - Tobias Kleinert
- Laboratory for Biological Psychology, Clinical Psychology, and Psychotherapy, Albert-Ludwigs-University of Freiburg, Stefan-Meier-Straße 8, 79104, Freiburg, Germany
- Department of Ergonomics, Leibniz Research Centre for Working Environment and Human Factors, Ardeystr. 67, 44139, Dortmund, Germany
| | - Delara Aryan
- Children's Hospital Los Angeles, The Saban Research Institute, Los Angeles, CA, 90027, USA
| | - Kyle Nash
- Department of Psychology, University of Alberta, Edmonton, AB, T6G 2E9, Canada
| | - Bastian Schiller
- Laboratory for Biological Psychology, Clinical Psychology, and Psychotherapy, Albert-Ludwigs-University of Freiburg, Stefan-Meier-Straße 8, 79104, Freiburg, Germany
| | - Thomas Koenig
- Children's Hospital Los Angeles, The Saban Research Institute, Los Angeles, CA, 90027, USA.
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, CH-3000, Bern, Switzerland.
- Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Clinical Geriatrics, Karolinska Institutet, Huddinge, Sweden.
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Schiller B, Sperl MFJ, Kleinert T, Nash K, Gianotti LRR. EEG Microstates in Social and Affective Neuroscience. Brain Topogr 2024; 37:479-495. [PMID: 37523005 PMCID: PMC11199304 DOI: 10.1007/s10548-023-00987-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 07/05/2023] [Indexed: 08/01/2023]
Abstract
Social interactions require both the rapid processing of multifaceted socio-affective signals (e.g., eye gaze, facial expressions, gestures) and their integration with evaluations, social knowledge, and expectations. Researchers interested in understanding complex social cognition and behavior face a "black box" problem: What are the underlying mental processes rapidly occurring between perception and action and why are there such vast individual differences? In this review, we promote electroencephalography (EEG) microstates as a powerful tool for both examining socio-affective states (e.g., processing whether someone is in need in a given situation) and identifying the sources of heterogeneity in socio-affective traits (e.g., general willingness to help others). EEG microstates are identified by analyzing scalp field maps (i.e., the distribution of the electrical field on the scalp) over time. This data-driven, reference-independent approach allows for identifying, timing, sequencing, and quantifying the activation of large-scale brain networks relevant to our socio-affective mind. In light of these benefits, EEG microstates should become an indispensable part of the methodological toolkit of laboratories working in the field of social and affective neuroscience.
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Affiliation(s)
- Bastian Schiller
- Laboratory for Biological Psychology, Clinical Psychology, and Psychotherapy, Albert-Ludwigs-University of Freiburg, Freiburg, Germany.
- Freiburg Brain Imaging Center, University Medical Center, Albert-Ludwigs-University of Freiburg, Freiburg, Germany.
| | - Matthias F J Sperl
- Department of Clinical Psychology and Psychotherapy, University of Giessen, Giessen, Germany
- Center for Mind, Brain and Behavior, Universities of Marburg and Giessen (Research Campus Central Hessen), Marburg, Germany
| | - Tobias Kleinert
- Laboratory for Biological Psychology, Clinical Psychology, and Psychotherapy, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
- Department of Ergonomics, Leibniz Research Centre for Working Environment and Human Factors (IfADo), Dortmund, Germany
| | - Kyle Nash
- Department of Psychology, University of Alberta, Edmonton, Canada.
| | - Lorena R R Gianotti
- Department of Social Neuroscience and Social Psychology, Institute of Psychology, University of Bern, Bern, Switzerland.
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Lacaux C, Strauss M, Bekinschtein TA, Oudiette D. Embracing sleep-onset complexity. Trends Neurosci 2024; 47:273-288. [PMID: 38519370 DOI: 10.1016/j.tins.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 01/17/2024] [Accepted: 02/07/2024] [Indexed: 03/24/2024]
Abstract
Sleep is crucial for many vital functions and has been extensively studied. By contrast, the sleep-onset period (SOP), often portrayed as a mere prelude to sleep, has been largely overlooked and remains poorly characterized. Recent findings, however, have reignited interest in this transitional period and have shed light on its neural mechanisms, cognitive dynamics, and clinical implications. This review synthesizes the existing knowledge about the SOP in humans. We first examine the current definition of the SOP and its limits, and consider the dynamic and complex electrophysiological changes that accompany the descent to sleep. We then describe the interplay between internal and external processing during the wake-to-sleep transition. Finally, we discuss the putative cognitive benefits of the SOP and identify novel directions to better diagnose sleep-onset disorders.
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Affiliation(s)
- Célia Lacaux
- Department of Basic Neurosciences, Faculty of Medicine, University of Geneva, Geneva, Switzerland; Institut du Cerveau (Paris Brain Institute), Institut du Cerveau et de la Moelle Épinière (ICM), Institut National de la Santé et de la Recherche Médicale (INSERM), Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, Paris 75013, France.
| | - Mélanie Strauss
- Neuropsychology and Functional Neuroimaging Research Group (UR2NF), Center for Research in Cognition and Neurosciences (CRCN), Université Libre de Bruxelles, B-1050 Brussels, Belgium; Departments of Neurology, Psychiatry, and Sleep Medicine, Hôpital Universitaire de Bruxelles, Site Erasme, Université Libre de Bruxelles, B-1070 Brussels, Belgium
| | - Tristan A Bekinschtein
- Cambridge Consciousness and Cognition Laboratory, Department of Psychology, University of Cambridge, Cambridge CB2 3EB, UK
| | - Delphine Oudiette
- Institut du Cerveau (Paris Brain Institute), Institut du Cerveau et de la Moelle Épinière (ICM), Institut National de la Santé et de la Recherche Médicale (INSERM), Centre National de la Recherche Scientifique (CNRS), Sorbonne Université, Paris 75013, France; Assistance Publique - Hopitaux de Paris (AP-HP), Hôpital Pitié-Salpêtrière, Service des Pathologies du Sommeil, National Reference Centre for Narcolepsy, Paris 75013, France.
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Michel CM, Brechet L, Schiller B, Koenig T. Current State of EEG/ERP Microstate Research. Brain Topogr 2024; 37:169-180. [PMID: 38349451 PMCID: PMC10884048 DOI: 10.1007/s10548-024-01037-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 01/31/2024] [Indexed: 02/23/2024]
Abstract
The analysis of EEG microstates for investigating rapid whole-brain network dynamics during rest and tasks has become a standard practice in the EEG research community, leading to a substantial increase in publications across various affective, cognitive, social and clinical neuroscience domains. Recognizing the growing significance of this analytical method, the authors aim to provide the microstate research community with a comprehensive discussion on methodological standards, unresolved questions, and the functional relevance of EEG microstates. In August 2022, a conference was hosted in Bern, Switzerland, which brought together many researchers from 19 countries. During the conference, researchers gave scientific presentations and engaged in roundtable discussions aiming at establishing steps toward standardizing EEG microstate analysis methods. Encouraged by the conference's success, a special issue was launched in Brain Topography to compile the current state-of-the-art in EEG microstate research, encompassing methodological advancements, experimental findings, and clinical applications. The call for submissions for the special issue garnered 48 contributions from researchers worldwide, spanning reviews, meta-analyses, tutorials, and experimental studies. Following a rigorous peer-review process, 33 papers were accepted whose findings we will comprehensively discuss in this Editorial.
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Affiliation(s)
- Christoph M Michel
- Functional Brain Mapping Lab, Department of Basic Neurosciences, Medical Faculty, University of Geneva, Geneva, Switzerland.
- Center for Biomedical Imaging (CIBM), Lausanne, Geneva, Switzerland.
| | - Lucie Brechet
- Department of Readaptation and Geriatrics, Medical Faculty, University of Geneva, Geneva, Switzerland
| | - Bastian Schiller
- Laboratory for Biological Psychology, Clinical Psychology, and Psychotherapy, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
| | - Thomas Koenig
- Translational Research Center, University Hospital of Psychiatry, University of Bern, Bern, Switzerland
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Koenig T, Diezig S, Kalburgi SN, Antonova E, Artoni F, Brechet L, Britz J, Croce P, Custo A, Damborská A, Deolindo C, Heinrichs M, Kleinert T, Liang Z, Murphy MM, Nash K, Nehaniv C, Schiller B, Smailovic U, Tarailis P, Tomescu M, Toplutaş E, Vellante F, Zanesco A, Zappasodi F, Zou Q, Michel CM. EEG-Meta-Microstates: Towards a More Objective Use of Resting-State EEG Microstate Findings Across Studies. Brain Topogr 2024; 37:218-231. [PMID: 37515678 PMCID: PMC10884358 DOI: 10.1007/s10548-023-00993-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 07/16/2023] [Indexed: 07/31/2023]
Abstract
Over the last decade, EEG resting-state microstate analysis has evolved from a niche existence to a widely used and well-accepted methodology. The rapidly increasing body of empirical findings started to yield overarching patterns of associations of biological and psychological states and traits with specific microstate classes. However, currently, this cross-referencing among apparently similar microstate classes of different studies is typically done by "eyeballing" of printed template maps by the individual authors, lacking a systematic procedure. To improve the reliability and validity of future findings, we present a tool to systematically collect the actual data of template maps from as many published studies as possible and present them in their entirety as a matrix of spatial similarity. The tool also allows importing novel template maps and systematically extracting the findings associated with specific microstate maps from ongoing or published studies. The tool also allows importing novel template maps and systematically extracting the findings associated with specific microstate maps in the literature. The analysis of 40 included sets of template maps indicated that: (i) there is a high degree of similarity of template maps across studies, (ii) similar template maps were associated with converging empirical findings, and (iii) representative meta-microstates can be extracted from the individual studies. We hope that this tool will be useful in coming to a more comprehensive, objective, and overarching representation of microstate findings.
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Affiliation(s)
- Thomas Koenig
- Translational Research Center, University Hospital of Psychiatry, University of Bern, Bern, Switzerland.
- Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Clinical Geriatrics, Karolinska Institutet, Huddinge, Sweden.
- Children's Hospital Los Angeles, The Saban Research Institute, Los Angeles, CA, 90027, USA.
| | - Sarah Diezig
- Translational Research Center, University Hospital of Psychiatry, University of Bern, Bern, Switzerland
| | | | - Elena Antonova
- Division of Psychology, Department of Life Sciences, College of Health, Medicine and Life Sciences & Centre for Cognitive Neuroscience, Brunel University London, Kingston Lane, Uxbridge, UB8 3PH, UK
| | - Fiorenzo Artoni
- Human Neuron Lab, Faculty of Medicine, Department of Clinical Neurosciences, University of Geneva, Geneva, Switzerland
| | - Lucie Brechet
- Department of Basic Neurosciences, University of Geneva, Campus Biotech, 9 Chemin des Mines, Geneva, 1202, Switzerland
| | - Juliane Britz
- Department of Psychology, University of Fribourg, Fribourg, Switzerland
| | - Pierpaolo Croce
- Department of Neurosciences, Imaging and Clinical Sciences, Behavioral Imaging and Neural Dynamics Center, Institute for Advanced Biomedical Technologies, "Gabriele d'Annunzio" University, Chieti, 66100, Italy
| | - Anna Custo
- Department of Nuclear Medicine, Geneva University Hospital (HUG), Geneva, Switzerland
| | - Alena Damborská
- Department of Psychiatry, Faculty of Medicine, University Hospital Brno, Masaryk University, Brno, Czechia
| | - Camila Deolindo
- Center of Functionally Integrative Neuroscience, Aarhus University, Aarhus, Denmark
| | - Markus Heinrichs
- Department of Psychology, Laboratory for Biological Psychology, Clinical Psychology and Psychotherapy, Albert-Ludwigs-University of Freiburg, Breisgau, Germany
| | - Tobias Kleinert
- Department of Psychology, Laboratory for Biological Psychology, Clinical Psychology and Psychotherapy, Albert-Ludwigs-University of Freiburg, Breisgau, Germany
- Department of Ergonomics, Leibniz Research Centre for Working Environment and Human Factors, Ardeystr. 67, Dortmund, 44139, Germany
| | - Zhen Liang
- School of Biomedical Engineering, Medical School, Shenzhen University, Shenzhen, China
| | - Michael M Murphy
- Department of Psychiatry, Harvard Medical School, Boston, MA, USA
- McLean Hospital, Belmont, MA, USA
| | - Kyle Nash
- Department of Psychology, University of Alberta, Edmonton, AB, T6G 2E9, Canada
| | - Chrystopher Nehaniv
- Departments of Systems Design Engineering and Electrical & Computer Engineering, University of Waterloo, 200 University Avenue W, Waterloo, ON, N2L 3G1, Canada
| | - Bastian Schiller
- Department of Psychology, Laboratory for Biological Psychology, Clinical Psychology and Psychotherapy, Albert-Ludwigs-University of Freiburg, Breisgau, Germany
| | - Una Smailovic
- Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Clinical Geriatrics, Karolinska Institutet, Huddinge, Sweden
- Department of Clinical Neurophysiology, Karolinska University Hospital, Stockholm, Sweden
| | - Povilas Tarailis
- Life Sciences Centre, Institute of Biosciences, Vilnius University, Vilnius, Lithuania
| | - Miralena Tomescu
- CINETic Center, National University of Theatre and Film "I.L. Caragiale" Bucharest, Bucharest, Romania
- Faculty of Educational Sciences, Department of Psychology, University "Stefan cel Mare" of Suceava, Suceava, Romania
- Faculty of Psychology and Educational Sciences, Department of Cognitive Sciences, University of Bucharest, Bucharest, Romania
| | - Eren Toplutaş
- Department of Neurology, Istanbul Eyupsultan Public Hospital, Istanbul, Turkey
- Program of Neuroscience Ph.D, Graduate School of Health Sciences, Istanbul Medipol University, Istanbul, Turkey
| | - Federica Vellante
- Department of Neurosciences, Imaging and Clinical Sciences, Behavioral Imaging and Neural Dynamics Center, Institute for Advanced Biomedical Technologies, "Gabriele d'Annunzio" University, Chieti, 66100, Italy
| | - Anthony Zanesco
- Department of Psychology, University of Miami, Coral Gables, FL, USA
| | - Filippo Zappasodi
- Department of Neurosciences, Imaging and Clinical Sciences, Behavioral Imaging and Neural Dynamics Center, Institute for Advanced Biomedical Technologies, "Gabriele d'Annunzio" University, Chieti, 66100, Italy
| | - Qihong Zou
- Center for MRI Research, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, 100871, China
| | - Christoph M Michel
- Department of Basic Neurosciences, University of Geneva, Campus Biotech, 9 Chemin des Mines, Geneva, 1202, Switzerland
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