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Bartholomew GL, Kraus SL, Karas LJ, Carpaneto F, Bennett R, Sigman MS, Yeung CS, Sarpong R. 14N to 15N Isotopic Exchange of Nitrogen Heteroaromatics through Skeletal Editing. J Am Chem Soc 2024; 146:2950-2958. [PMID: 38286797 PMCID: PMC11646074 DOI: 10.1021/jacs.3c11515] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2024]
Abstract
The selective modification of nitrogen heteroaromatics enables the development of new chemical tools and accelerates drug discovery. While methods that focus on expanding or contracting the skeletal structures of heteroaromatics are emerging, methods for the direct exchange of single core atoms remain limited. Here, we present a method for 14N → 15N isotopic exchange for several aromatic nitrogen heterocycles. This nitrogen isotope transmutation occurs through activation of the heteroaromatic substrate by triflylation of a nitrogen atom, followed by a ring-opening/ring-closure sequence mediated by 15N-aspartate to effect the isotopic exchange of the nitrogen atom. Key to the success of this transformation is the formation of an isolable 15N-succinyl intermediate, which undergoes elimination to give the isotopically labeled heterocycle. These transformations occur under mild conditions in high chemical and isotopic yields.
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Affiliation(s)
- G Logan Bartholomew
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Samantha L Kraus
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Lucas J Karas
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Filippo Carpaneto
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Raffeal Bennett
- Discovery Analytical Research, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Matthew S Sigman
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Charles S Yeung
- Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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Leškovskis K, Mishnev A, Novosjolova I, Turks M. Structural Study of Azide-Tetrazole Equilibrium in Pyrido[2,3-d]pyrimidines. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Preparation of Novel Pyrazolo[4,3- e]tetrazolo[1,5- b][1,2,4]triazine Sulfonamides and Their Experimental and Computational Biological Studies. Int J Mol Sci 2022; 23:ijms23115892. [PMID: 35682571 PMCID: PMC9180621 DOI: 10.3390/ijms23115892] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 05/16/2022] [Accepted: 05/17/2022] [Indexed: 02/04/2023] Open
Abstract
Pyrazolo[4,3-e]tetrazolo[1,5-b][1,2,4]triazine sulfonamides constitute a novel class of heterocyclic compounds with broad biological activity, including anticancer properties. Investigated in this study, MM-compounds (MM134, MM136, MM137, and MM139) exhibited cytotoxic and proapoptotic activity against cancer cell lines (BxPC-3, PC-3, and HCT-116) in nanomolar concentrations without causing cytotoxicity in normal cells (L929 and WI38). In silico predictions indicate that tested compounds exhibit favorable pharmacokinetic profiles and may exert anticancer activity through the inhibition of BTK kinase, the AKT-mTOR pathway and PD1-PD-L1 interaction. Our findings point out that these sulfonamide derivatives may constitute a source of new anticancer drugs after optimization.
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Deev SL, Shestakova TS, Shenkarev ZO, Paramonov AS, Khalymbadzha IA, Eltsov OS, Charushin VN, Chupakhin ON. 15N Chemical Shifts and JNN-Couplings as Diagnostic Tools for Determination of the Azide-Tetrazole Equilibrium in Tetrazoloazines. J Org Chem 2021; 87:211-222. [PMID: 34941254 DOI: 10.1021/acs.joc.1c02225] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Selectively 15N-labeled tetrazolo[1,5-b][1,2,4]triazines and tetrazolo[1,5-a]pyrimidines bearing one, two, or three 15N labels were synthesized. The synthesized compounds were studied by 1H, 13C, and 15N NMR spectroscopy in DMSO and TFA solutions, where the azide-tetrazole equilibrium can lead to the formation of two tetrazole (T, T') isomers and one azide (A) isomer for each compound. Incorporation of the 15N-label(s) leads to the appearance of 15N-15N coupling constants (JNN), which can be easily measured via simple 1D 15N NMR spectra, even at natural abundance between labeled and unlabeled 15N atoms. The chemical shifts for the 15N nuclei in the azole moiety are very sensitive to the ring opening and azide formation, thus providing information about the azido-tetrazole equilibrium. At the same time, the 1-2JNN couplings between 15N-labeled atoms in the azole and azine fragments unambiguously determine the fusion type between tetrazole and azine rings in the cyclic isomers T and T'. Thus, combined analysis of 15N chemical shifts and JNN values in selectively isotope-enriched compounds provides an effective diagnostic tool for direct structural determination of tetrazole isomers and azide form in solution. This method was found to be the most simple and efficient way to study the azido-tetrazole equilibrium.
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Affiliation(s)
- Sergey L Deev
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Tatyana S Shestakova
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Zakhar O Shenkarev
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
| | - Alexander S Paramonov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya Street, 117997 Moscow, Russia
| | - Igor A Khalymbadzha
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Oleg S Eltsov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia
| | - Valery N Charushin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia.,I. Ya. Postovsky Institute of Organic Synthesis of Ural Branch of the Russian Academy of Sciences, 22 Sofya Kovalevskaya Street, 620108 Yekaterinburg, Russia
| | - Oleg N Chupakhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira Street, 620002 Yekaterinburg, Russia.,I. Ya. Postovsky Institute of Organic Synthesis of Ural Branch of the Russian Academy of Sciences, 22 Sofya Kovalevskaya Street, 620108 Yekaterinburg, Russia
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Efimenko NI, Tomashenko OA, Spiridonova DV, Novikov MS, Khlebnikov AF. Nucleophile-Induced Rearrangement of 2 H-Azirine-2-carbonyl Azides to 2-(1 H-Tetrazol-1-yl)acetic Acid Derivatives. Org Lett 2021; 23:6362-6366. [PMID: 34382398 DOI: 10.1021/acs.orglett.1c02157] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
2H-Azirine-2-carbonyl azides undergo a rearrangement into derivatives of 2-(1H-tetrazol-1-yl)acetic acid when interacting with O- and S-nucleophiles at room temperature. The reaction is catalyzed by tertiary amines or hydrazoic acid. The reaction with primary alcohols and phenols gives alkyl/aryl 2-(1H-tetrazol-1-yl)acetates. Thiophenols react with 2H-azirine-2-carbonyl azides to afford S-aryl 2-(1H-tetrazol-1-yl)ethanethioates. The mechanism of the nucleophile-induced rearrangement of 2H-azirine-2-carbonyl azides is discussed on the basis of DFT calculations as well as kinetic and 15N labeling experiments.
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Affiliation(s)
- Nikita I Efimenko
- Institute of Chemistry, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
| | - Olesya A Tomashenko
- Institute of Chemistry, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
| | - Dar'ya V Spiridonova
- Institute of Chemistry, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
| | - Mikhail S Novikov
- Institute of Chemistry, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
| | - Alexander F Khlebnikov
- Institute of Chemistry, St. Petersburg State University, 7/9 Universitetskaya nab., St. Petersburg 199034, Russia
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Recent investigations and applications of azidoazomethine-tetrazole tautomeric equilibrium (microreview). Chem Heterocycl Compd (N Y) 2019. [DOI: 10.1007/s10593-019-02574-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Belen’kii LI, Evdokimenkova YB. The literature of heterocyclic chemistry, part XVII, 2017. ADVANCES IN HETEROCYCLIC CHEMISTRY 2019:337-418. [DOI: 10.1016/bs.aihch.2019.01.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
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Deev SL, Khalymbadzha IA, Shestakova TS, Charushin VN, Chupakhin ON. 15N labeling and analysis of 13C–15N and 1H–15N couplings in studies of the structures and chemical transformations of nitrogen heterocycles. RSC Adv 2019; 9:26856-26879. [PMID: 35528595 PMCID: PMC9070671 DOI: 10.1039/c9ra04825a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Accepted: 08/19/2019] [Indexed: 11/21/2022] Open
Abstract
This review provides a generalization of effective examples of 15N labeling followed by an analysis of JCN and JHN couplings in solution as a tool to study the structural aspects and pathways of chemical transformations in nitrogen heterocycles.
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Affiliation(s)
- Sergey L. Deev
- Ural Federal University
- 620002 Yekaterinburg
- Russian Federation
- I. Ya. Postovsky Institute of Organic Synthesis
- 620219 Yekaterinburg
| | | | | | - Valery N. Charushin
- Ural Federal University
- 620002 Yekaterinburg
- Russian Federation
- I. Ya. Postovsky Institute of Organic Synthesis
- 620219 Yekaterinburg
| | - Oleg N. Chupakhin
- Ural Federal University
- 620002 Yekaterinburg
- Russian Federation
- I. Ya. Postovsky Institute of Organic Synthesis
- 620219 Yekaterinburg
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Synthesis and study of the azide-tetrazole tautomerism in 2-azido-4-(trifluoromethyl)-6-R-pyrimidines (R = H, 4-ClC6H4). Russ Chem Bull 2018. [DOI: 10.1007/s11172-018-2154-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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