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Molecular Basis and Evolutionary Origin of 1-Nitronaphthalene Catabolism in Sphingobium sp. Strain JS3065. Appl Environ Microbiol 2023; 89:e0172822. [PMID: 36622195 PMCID: PMC9888181 DOI: 10.1128/aem.01728-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
Nitrated polycyclic aromatic hydrocarbons (nitro-PAHs) enter the environment from natural sources and anthropogenic activities. To date, microorganisms able to mineralize nitro-PAHs have not been reported. Here, Sphingobium sp. strain JS3065 was isolated by selective enrichment for its ability to grow on 1-nitronaphthalene as the sole carbon, nitrogen, and energy source. Analysis of the complete genome of strain JS3065 indicated that the gene cluster encoding 1-nitronaphthalene catabolism (nin) is located on a plasmid. Based on the genetic and biochemical evidence, the nin genes share an origin with the nag-like genes encoding naphthalene degradation in Ralstonia sp. strain U2. The initial step in degradation of 1-nitronaphthalene is catalyzed by a three-component dioxygenase, NinAaAbAcAd, resulting in formation of 1,2-dihydroxynaphthalene which is also an early intermediate in the naphthalene degradation pathway. Introduction of the ninAaAbAcAd genes into strain U2 enabled its growth on 1-nitronaphthalene. Phylogenic analysis of NinAc suggested that an ancestral 1-nitronaphthalene dioxygenase was an early step in the evolution of nitroarene dioxygenases. Based on bioinformatic analysis and enzyme assays, the subsequent assimilation of 1,2-dihydroxynaphthalene seems to follow the well-established pathway for naphthalene degradation by Ralstonia sp. strain U2. This is the first report of catabolic pathway for 1-nitronaphthalene and is another example of how expanding the substrate range of Rieske type dioxygenase enables bacteria to grow on recalcitrant nitroaromatic compounds. IMPORTANCE Nitrated polycyclic aromatic hydrocarbons (nitro-PAHs) have been widely detected in the environment and they are more toxic than their corresponding parent PAHs. Although biodegradation of many PAHs has been extensively described at genetic and biochemical levels, little is known about the microbial degradation of nitro-PAHs. This work reports the isolation of a Sphingobium strain growing on 1-nitronaphthalene and the genetic basis for the catabolic pathway. The pathway evolved from an ancestral naphthalene catabolic pathway by a remarkably small modification in the specificity of the initial dioxygenase. Data presented here not only shed light on the biochemical processes involved in the microbial degradation of globally important nitrated polycyclic aromatic hydrocarbons, but also provide an evolutionary paradigm for how bacteria evolve a novel catabolic pathway with minimal alteration of preexisting pathways for natural organic compounds.
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Krzyszczak A, Czech B. Occurrence and toxicity of polycyclic aromatic hydrocarbons derivatives in environmental matrices. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 788:147738. [PMID: 34023603 DOI: 10.1016/j.scitotenv.2021.147738] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 05/08/2021] [Accepted: 05/09/2021] [Indexed: 06/12/2023]
Abstract
In the last years, there is great attention paid to the determination of polycyclic aromatic hydrocarbons (PAHs) in different environmental matrices. Extensive reviews on PAHs presence and toxicity were published recently. However, PAHs formation and transformation in the environment lead to the production of PAHs derivatives containing oxygen (O-PAHs), nitrogen (N-PAHs and aazarenes AZA) or sulfur (PASHs) in the aromatic ring. The development of new analytical methods enabled the determination of these novel contaminants. The presence of oxygen, nitrogen, or sulfur in PAHs aromatic rings increased their toxicity. The most common primary sources of PAHs derivatives are biological processes such as microbial activity (in soil, water, and wastewater treatment plants (O-PAHs)) and all processes involving combustion of fuel, coal, and biomass (O-PAHs, N-PAHs, AZA, PASHs). The secondary resources involved i) photochemical (UV light), ii) radical-mediated (OH, NO3), and iii) reactions with oxidants (O3, NOx) (O-PAHs, N-PAHs, AZA). Furthermore, N-PAHs were able to transform to their corresponding O-PAHs, while other derivatives were not. It indicated that N-PAHs are more vulnerable to photooxidation in the environment. 85% of O- and N-PAHs were detected with particle matter below 2.5 μm suggesting their easier bioaccessibility. More than 90% of compounds with four and more aromatic cycles were present in the particle phase in the air. Although the concentrations of N-PAHs or O-PAHs may be similar to PAHs concentration or even 1000 times lower than parent PAHs, PAHs derivatives accounted for a significant portion of the total mutagenicity. The present review is describing the results of the studies on the determination of PAHs derivatives in different environmental matrices including airborne particles, sediments, soil, and organisms. The mechanisms of their formation and toxicity were assessed.
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Affiliation(s)
- Agnieszka Krzyszczak
- Department of Radiochemistry and Environmental Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, University of Maria Curie-Sklodowska, Pl. M. Curie-Sklodowskiej 3, 20-031 Lublin, Poland
| | - Bożena Czech
- Department of Radiochemistry and Environmental Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, University of Maria Curie-Sklodowska, Pl. M. Curie-Sklodowskiej 3, 20-031 Lublin, Poland.
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Ning X, Wang Y, Zhu N, Li G, Sang N. Risk assessment of the lipid metabolism-disrupting effects of nitro-PAHs. JOURNAL OF HAZARDOUS MATERIALS 2020; 396:122611. [PMID: 32353732 DOI: 10.1016/j.jhazmat.2020.122611] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 03/18/2020] [Accepted: 03/27/2020] [Indexed: 06/11/2023]
Abstract
Nitro-polycyclic aromatic hydrocarbons (NPAHs) are of increasing global concern due to their ubiquitous occurrence and long-range transport in the environment. However, their potential metabolism-disrupting effects, especially nuclear receptor-related lipid disorders, are still poorly understood. Targeting estrogen receptor α (ERα), this study for the first time evaluated the lipid metabolic effects of NPAHs using in vitro and in vivo models. The results indicated that four of the five NPAHs tested exhibited significant ERα agonistic activities, and induced increased secretion of 17β-estradiol (E2) in HepG2 cells. Furthermore, lipidomic analysis showed that exposure to the candidate NPAH (3-nitrofluoranthene, 3-NFA) led to elevated hepatic levels of triacylglycerols (TAGs) and cholesteryl esters (CEs). Importantly, the lipid overload induced by 3-NFA was verified in the livers of zebrafish larvae using Oil Red O staining. Additionally, significant increases in E2 production and the expression levels of associated genes (17βHSD and C/EBP-α) further supported the involvement of the ERα signaling pathway in the lipid metabolic perturbation induced by 3-NFA. These results provide novel insight into the lipid metabolism-disrupting effects induced by NPAHs and may offer a better understanding of the environmental risks of NPAHs.
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Affiliation(s)
- Xia Ning
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, Shanxi 030006, PR China
| | - Yue Wang
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, Shanxi 030006, PR China
| | - Na Zhu
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, Shanxi 030006, PR China
| | - Guangke Li
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, Shanxi 030006, PR China.
| | - Nan Sang
- College of Environment and Resource, Research Center of Environment and Health, Shanxi University, Taiyuan, Shanxi 030006, PR China
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Bandowe BAM, Meusel H. Nitrated polycyclic aromatic hydrocarbons (nitro-PAHs) in the environment - A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 581-582:237-257. [PMID: 28069306 DOI: 10.1016/j.scitotenv.2016.12.115] [Citation(s) in RCA: 188] [Impact Index Per Article: 26.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 12/16/2016] [Accepted: 12/16/2016] [Indexed: 05/07/2023]
Abstract
Nitrated polycyclic aromatic hydrocarbons (nitro-PAHs) are derivatives of PAHs with at least one nitro-functional group (-NO2) on the aromatic ring. The toxic effects of several nitro-PAHs are more pronounced than those of PAHs. Some nitro-PAHs are classified as possible or probable human carcinogens by the International Agency for Research on Cancer. Nitro-PAHs are released into the environment from combustion of carbonaceous materials (e.g. fossil fuels, biomass, waste) and post-emission transformation of PAHs. Most studies on nitro-PAHs are about air (gas-phase and particulate matter), therefore less is known about the occurrence, concentrations, transport and fate of nitro-PAHs in soils, aquatic environment and biota. Studies on partition and exchange of nitro-PAHs between adjacent environmental compartments are also sparse. The concentrations of nitro-PAHs cannot easily be predicted from the intensity of anthropogenic activity or easily related to those of PAHs. This is because anthropogenic source strengths of nitro-PAHs are different from those of PAHs, and also nitro-PAHs have additional sources (formed by photochemical conversion of PAHs). The fate and transport of nitro-PAHs could be considerably different from their related PAHs because of their higher molecular weights and considerably different sorption mechanisms. Hence, specific knowledge on nitro-PAHs is required. Regulations on nitro-PAHs are also lacking. We present an extensive review of published literature on the sources, formation, physico-chemical properties, methods of determination, occurrence, concentration, transport, fate, (eco)toxicological and adverse health effects of nitro-PAHs. We also make suggestions and recommendations about data needs, and future research directions on nitro-PAHs. It is expected that this review will stimulate scientific discussion and provide the basis for further research and regulations on nitro-PAHs.
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Affiliation(s)
- Benjamin A Musa Bandowe
- Institute of Geography, University of Bern, Hallerstrasse 12, 3012 Bern, Switzerland; Oeschger Centre for Climate Change Research, University of Bern, Falkenplatz 16, 3012 Bern, Switzerland.
| | - Hannah Meusel
- Multiphase Chemistry Department, Max Planck Institute for Chemistry, Hahn-Meitner-Weg 1, 55128 Mainz, Germany
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Marquès M, Mari M, Sierra J, Nadal M, Domingo JL. Solar radiation as a swift pathway for PAH photodegradation: A field study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 581-582:530-540. [PMID: 28065544 DOI: 10.1016/j.scitotenv.2016.12.161] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Revised: 12/23/2016] [Accepted: 12/23/2016] [Indexed: 06/06/2023]
Abstract
The photodegradation of polycyclic aromatic hydrocarbons (PAHs) may be an important degradation pathway of PAHs in regions with a high solar radiation. The present investigation was aimed at studying the photodegradation of PAHs after their deposition on surface soils with different textures. Photodegradation by-products were also identified and semi-quantified, as well as correlated with the decrease of parent compounds. The experiment was performed by deploying soil samples spiked with a mixture of the 16 US EPA priority PAHs in a methacrylate box, exposed to solar radiation for 7days, meaning a solar energy of 102.6MJm-2. As hypothesized, the individual PAHs were volatilized, sorbed and/or photodegraded, depending on their physicochemical properties, as well as the soil characteristics. Low and medium molecular weight PAHs were more sorbed and photodegraded in fine-textured Regosol soil, while a higher volatilization was observed in the coarse-textured Arenosol soil. In contrast, high molecular weight PAHs were more photodegraded in Arenosol soil. Specially low half-lives were noted for anthracene and benzo(a)pyrene, agreeing with previous findings at laboratory scale. Nine by-products were identified, including oxy-, nitro- and hydro-PAHs, whose toxic and mutagenic potential might be higher than the 16 priority PAHs.
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Affiliation(s)
- Montse Marquès
- Laboratory of Toxicology and Environmental Health, School of Medicine, IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Catalonia, Spain; Environmental Engineering Laboratory, Departament d'Enginyeria Quimica, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Catalonia, Spain
| | - Montse Mari
- Laboratory of Toxicology and Environmental Health, School of Medicine, IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Catalonia, Spain; Environmental Engineering Laboratory, Departament d'Enginyeria Quimica, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Catalonia, Spain
| | - Jordi Sierra
- Environmental Engineering Laboratory, Departament d'Enginyeria Quimica, Universitat Rovira i Virgili, Av. Països Catalans 26, 43007 Tarragona, Catalonia, Spain; Laboratory of Soil Science, Faculty of Pharmacy, Universitat de Barcelona, Av. Joan XXIII s/n, 08028 Barcelona, Catalonia, Spain
| | - Martí Nadal
- Laboratory of Toxicology and Environmental Health, School of Medicine, IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Catalonia, Spain.
| | - José L Domingo
- Laboratory of Toxicology and Environmental Health, School of Medicine, IISPV, Universitat Rovira i Virgili, Sant Llorenç 21, 43201 Reus, Catalonia, Spain
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Ito K, Ito M, Onduka T, Ohta K, Torii T, Hano T, Mochida K, Ohkubo N, Miura T, Fujii K. Differences in the ability of two marine annelid species, Thalassodrilides sp. and Perinereis nuntia, to detoxify 1-nitronaphthalene. CHEMOSPHERE 2016; 151:339-344. [PMID: 26950025 DOI: 10.1016/j.chemosphere.2016.02.026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Revised: 01/06/2016] [Accepted: 02/06/2016] [Indexed: 06/05/2023]
Abstract
Bioremediation is a promising method for remediating environmentally polluted water. We investigated the abilities of two benthic annelid species to biotransform 1-nitronaphthalene, a nitrated polycyclic aromatic hydrocarbon. We used an oligochaete, Thalassodrilides sp. (Naididae), collected from the sediment beneath a fish farm and a polychaete, Perinereis nuntia, which was obtained from a commercial source. Populations of both organisms were exposed to 1400 μg L(-1) of 1-nitronaphthalene in seawater for 3 days in the dark at 20 °C. The concentration of the pollutant decreased to 12 μg L(-1) in the seawater containing the Thalassodrilides sp. and to 560 μg L(-1) in the seawater containing P. nuntia. The 1-nitronaphthalene concentration in the bodies of the animals increased from 12 to 94 μg kg(-1) in Thalassodrilides sp. and from 0.90 μg kg(-1) to 38,000 μg kg(-1) in P. nuntia. After 3 days, 99% and 40% of the 1-nitronaphthalene had been biotransformed in the Thalassodrilides sp. and P. nuntia experimental groups, respectively. We then tested the acute toxicity of residual 1-nitronaphthalene from the same water using mummichog (fish) larvae. After the larvae had been exposed for 96 h, the percentage of apparently unaffected larvae remaining was 83.3% in Thalassodrilides sp. group but only 16.7% in the P. nuntia group. Clearly, of the two species we studied, Thalassodrilides sp. had a superior ability to convert 1-nitronaphthalene into substances that were nontoxic to mummichog larvae. Therefore, we recommend the use of this species for bioremediation of chemically polluted sediments.
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Affiliation(s)
- Katsutoshi Ito
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan.
| | - Mana Ito
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
| | - Toshimitsu Onduka
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
| | - Kohei Ohta
- South Ehime Fisheries Research Center, Ehime University, 1289-1, Funakoshi, Ainan, Ehime 798-4292, Japan
| | - Takaaki Torii
- IDEA Consultants Inc., 1334-5, Riemon, Yaizu-shi, Shizuoka 421-0212, Japan
| | - Takeshi Hano
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
| | - Kazuhiko Mochida
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
| | - Nobuyuki Ohkubo
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
| | - Takeshi Miura
- South Ehime Fisheries Research Center, Ehime University, 1289-1, Funakoshi, Ainan, Ehime 798-4292, Japan
| | - Kazunori Fujii
- National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, 2-17-5, Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan
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