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Wang S, Jiang L, Zhao Z, Chen Z, Wang J, Alain K, Cui L, Zhong Y, Peng Y, Lai Q, Dong X, Shao Z. Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments. THE ISME JOURNAL 2024; 18:wrae119. [PMID: 38916247 PMCID: PMC11474244 DOI: 10.1093/ismejo/wrae119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2024] [Revised: 02/21/2024] [Accepted: 06/22/2024] [Indexed: 06/26/2024]
Abstract
Diazotrophic microorganisms regulate marine productivity by alleviating nitrogen limitation. So far chemolithoautotrophic bacteria are widely recognized as the principal diazotrophs in oligotrophic marine and terrestrial ecosystems. However, the contribution of chemolithoautotrophs to nitrogen fixation in organic-rich habitats remains unclear. Here, we utilized metagenomic and metatranscriptomic approaches integrated with cultivation assays to investigate the diversity, distribution, and activity of diazotrophs residing in Zhangzhou mangrove sediments. Physicochemical assays show that the studied mangrove sediments are typical carbon-rich, sulfur-rich, nitrogen-limited, and low-redox marine ecosystems. These sediments host a wide phylogenetic variety of nitrogenase genes, including groups I-III and VII-VIII. Unexpectedly diverse chemolithoautotrophic taxa including Campylobacteria, Gammaproteobacteria, Zetaproteobacteria, and Thermodesulfovibrionia are the predominant and active nitrogen fixers in the 0-18 cm sediment layer. In contrast, the 18-20 cm layer is dominated by active diazotrophs from the chemolithoautotrophic taxa Desulfobacterota and Halobacteriota. Further analysis of MAGs shows that the main chemolithoautotrophs can fix nitrogen by coupling the oxidation of hydrogen, reduced sulfur, and iron, with the reduction of oxygen, nitrate, and sulfur. Culture experiments further demonstrate that members of chemolithoautotrophic Campylobacteria have the nitrogen-fixing capacity driven by hydrogen and sulfur oxidation. Activity measurements confirm that the diazotrophs inhabiting mangrove sediments preferentially drain energy from diverse reduced inorganic compounds other than from organics. Overall, our results suggest that chemolithoautotrophs rather than heterotrophs are dominant nitrogen fixers in mangrove sediments. This study underscores the significance of chemolithoautotrophs in carbon-dominant ecosystems.
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Affiliation(s)
- Shasha Wang
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Lijing Jiang
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Zhuoming Zhao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Zhen Chen
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Jun Wang
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Karine Alain
- Univ Brest, CNRS, Ifremer, EMR6002 BIOMEX, Biologie Interactions et adaptations des Organismes en Milieu EXtrême, IRP 1211 MicrobSea, F-29280 Plouzané, France
| | - Liang Cui
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Yangsheng Zhong
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Yongyi Peng
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Qiliang Lai
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
| | - Xiyang Dong
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, PR China
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China; State Key Laboratory Breeding Base of Marine Genetic Resources; Fujian Keey Laboratory of Marine Genetic Resources; Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen 361005, PR China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, PR China
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Nguyen KT, Navidpour AH, Ahmed MB, Mojiri A, Huang Y, Zhou JL. Adsorption and desorption behavior of arsenite and arsenate at river sediment-water interface. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 317:115497. [PMID: 35751289 DOI: 10.1016/j.jenvman.2022.115497] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 06/05/2022] [Accepted: 06/05/2022] [Indexed: 06/15/2023]
Abstract
The adsorption of inorganic arsenic (As) plays an important role in the mobility and transport of As in the river environment. In this work, the adsorption and desorption of arsenite [As(III)] and arsenate [As(V)] on river sediment were conducted under different pH, initial As concentrations, river water and sediment composition to assess As adsorption behavior and mechanism. Both adsorption kinetics and equilibrium results showed higher adsorption capacity of sediment for As(V) than As(III). Adsorption of As(III) and As(V) on river sediment was favored in acidic to neutral conditions and on finer sediment particles, while sediment organic matter marginally reduced adsorption capacity. In addition, higher adsorption affinity of As(III) and As(V) in river sediment was observed in deionised water than in river water. For the release process, the desorption of both As(III) and As(V) followed nonlinear kinetic models well, showing higher amount of As(III) release from sediment than As(V). Adsorption isotherm was well described by both Langmuir and Freundlich models, demonstrating higher maximum adsorption capacity of As(V) at 298.7 mg/kg than As(III) at 263.3 mg/kg in deionised water, and higher maximum adsorption capacity of As(III) of 234.3 mg/kg than As(V) of 206.2 mg/kg in river water. The XRD showed the changes in the peaks of mineral groups of sediment whilst FTIR results revealed the changes related to surface functional groups before and after adsorption, indicating that Fe-O/Fe-OH, Si(Al)-O, hydroxyl and carboxyl functional groups were predominantly involved in As(III) and As(V) adsorption on sediment surface. XPS analysis evidenced the transformation between these As species in river sediment after adsorption, whilst SEM-EDS revealed higher amount of As(V) in river sediment than As(III) due to the lower signal of Al.
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Affiliation(s)
- Kien Thanh Nguyen
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, NSW, 2007, Australia
| | - Amir Hossein Navidpour
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, NSW, 2007, Australia
| | - Mohammad Boshir Ahmed
- School of Material Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea
| | - Amin Mojiri
- Department of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-4-1 Kagamiyama, Higashihiroshima, 739-8527, Hiroshima, Japan
| | - Yuhan Huang
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, NSW, 2007, Australia
| | - John L Zhou
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, NSW, 2007, Australia.
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Alam MR, Rahman MM, Tam NFY, Yu RMK, MacFarlane GR. The accumulation and distribution of arsenic species and selected metals in the saltmarsh halophyte, spiny rush (Juncus acutus). MARINE POLLUTION BULLETIN 2022; 175:113373. [PMID: 35093784 DOI: 10.1016/j.marpolbul.2022.113373] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 01/16/2022] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
Abstract
This study examined the accumulation of As species, Se, Cu, Zn, Cd and Pb in the halophyte Juncus acutus, collected from three anthropogenically impacted estuaries in NSW, Australia. As concentration ranged from 4 to 22 μg/g at Georges River, 2-16 μg/g at Lake Macquarie and 6 μg/g at Hunter Estuary. Inorganic As was accumulated mainly in roots with low translocation to culm with a greater abundance of AsV. However, AsIII (TF = 0.32) showed greater mobility from the roots to shoots than AsV (TF = 0.04), indicating a higher quantity of AsIII specific transporter assemblages in the plasmalemma of the endodermis or cytoplasmic reduction of AsV to AsIII in culms. Metal(loid)s, including As (90%), were predominantly in root tissues and very limited translocation to culm, indicating the species is a useful phytostabiliser. As and all other metal(loid)s in roots were correlated with sediment loads (p < 0.05, R2 = 0.10-0.52), indicating the species would be an accumulative bioindicator.
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Affiliation(s)
- Md Rushna Alam
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW 2308, Australia; Department of Aquaculture, Patuakhali Science and Technology University, Dumki, Patuakhali 8602, Bangladesh
| | - Mohammad Mahmudur Rahman
- Global Centre for Environmental Remediation, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Nora Fung-Yee Tam
- Department of Science, School of Science and Technology, The Open University of Hong Kong, Hong Kong Special Administrative Region, China
| | - Richard Man Kit Yu
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Geoff R MacFarlane
- School of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW 2308, Australia.
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Cui J, Wang D, Lin J, Wang Y, Ren M, Yang Y, Shi P. New application of lanthanum-modified bentonite (Phoslock ®) for immobilization of arsenic in sediments. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:2052-2062. [PMID: 32865683 DOI: 10.1007/s11356-020-10565-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 08/18/2020] [Indexed: 06/11/2023]
Abstract
Lanthanum-modified bentonite (LMB, Phoslock®) is a well-known capping agent for phosphorus immobilization in sediments. Herein, LMB was used to immobilize As in sediments. Batch capacity experiments for arsenate and arsenite adsorption were carried out to obtain adsorption isotherms and kinetics using the Langmuir and Freundlich model calculations. High-resolution (HR) diffusive gradients in thin films (DGT) were applied to monitor the changes of weakly bound As fraction near sediment-water interface (SWI). The interaction of As(III) and As(V) with LMB was influenced by pH and initial mineral composition. As(V) was more obviously adsorbed than As(III) at pH 4 to 9, with mean adsorption of 3.89 mg g-1 and 0.04 mg g-1, respectively, while at pH > 9 As(III) was preferentially adsorbed. After LMB amendment for 2 months, the maximum As removal efficiency in the pore and overlying water reached 84.5% and 99.3%, respectively. The capping agent remained stable in the top sediments, while the maximum DGT labile As content decreased to 0.89 and 0.51 μg L-1 in dosage-and time-treatments. The As concentration inflection point moved down to a deeper layer. As species changed from labile exchangeable-As to Fe-oxide-bound and residual As. The proportion of mobile As finally decreased to 10.5% of the total As in the upper 20-mm layer sediment. The increase of Kd (the distribution coefficient at SWI) and k1 (adsorption rate constant) and the decrease of Tc (response time of (de)sorption) in the DGT-induced fluxes model (DIFS) indicated the time-dependent impediment of As release from the sediment due to LMB immobilization.
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Affiliation(s)
- Jingzhen Cui
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China.
- College of Life and Environmental Science, Hunan University of Arts and Science, Changde, 415000, China.
| | - Dan Wang
- Shanghai Waterway Engineering Design and Consulting Co., Ltd., Shanghai, 200120, China
| | - Juan Lin
- School of Geographic Science, Nantong University, Nantong, 226000, China
| | - Yan Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Mingyi Ren
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Youwei Yang
- College of Life and Environmental Science, Hunan University of Arts and Science, Changde, 415000, China
| | - Pengling Shi
- College of Life and Environmental Science, Hunan University of Arts and Science, Changde, 415000, China
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Mahamoud Ahmed A, Lyautey E, Bonnineau C, Dabrin A, Pesce S. Environmental Concentrations of Copper, Alone or in Mixture With Arsenic, Can Impact River Sediment Microbial Community Structure and Functions. Front Microbiol 2018; 9:1852. [PMID: 30158909 PMCID: PMC6104476 DOI: 10.3389/fmicb.2018.01852] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Accepted: 07/24/2018] [Indexed: 12/03/2022] Open
Abstract
In many aquatic ecosystems, sediments are an essential compartment, which supports high levels of specific and functional biodiversity thus contributing to ecological functioning. Sediments are exposed to inputs from ground or surface waters and from surrounding watershed that can lead to the accumulation of toxic and persistent contaminants potentially harmful for benthic sediment-living communities, including microbial assemblages. As benthic microbial communities play crucial roles in ecological processes such as organic matter recycling and biomass production, we performed a 21-day laboratory channel experiment to assess the structural and functional impact of metals on natural microbial communities chronically exposed to sediments spiked with copper (Cu) and/or arsenic (As) alone or mixed at environmentally relevant concentrations (40 mg kg-1 for each metal). Heterotrophic microbial community responses to metals were evaluated both in terms of genetic structure (using ARISA analysis) and functional potential (using exoenzymatic, metabolic and functional genes analyses). Exposure to Cu had rapid marked effects on the structure and most of the functions of the exposed communities. Exposure to As had almost undetectable effects, possibly due to both lack of As bioavailability or toxicity toward the exposed communities. However, when the two metals were combined, certain functional responses suggested a possible interaction between Cu and As toxicity on heterotrophic communities. We also observed temporal dynamics in the functional response of sediment communities to chronic Cu exposure, alone or in mixture, with some functions being resilient and others being impacted throughout the experiment or only after several weeks of exposure. Taken together, these findings reveal that metal contamination of sediment could impact both the genetic structure and the functional potential of chronically exposed microbial communities. Given their functional role in aquatic ecosystems, it poses an ecological risk as it may impact ecosystem functioning.
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Affiliation(s)
- Ayanleh Mahamoud Ahmed
- Irstea, UR RiverLy, Centre de Lyon-Villeurbanne, Villeurbanne, France
- CARRTEL, Univ. Savoie Mont Blanc, INRA, Chambéry, France
- Centre de Recherche, Université de Djibouti, Djibouti, Djibouti
| | - Emilie Lyautey
- CARRTEL, Univ. Savoie Mont Blanc, INRA, Chambéry, France
| | - Chloé Bonnineau
- Irstea, UR RiverLy, Centre de Lyon-Villeurbanne, Villeurbanne, France
| | - Aymeric Dabrin
- Irstea, UR RiverLy, Centre de Lyon-Villeurbanne, Villeurbanne, France
| | - Stéphane Pesce
- Irstea, UR RiverLy, Centre de Lyon-Villeurbanne, Villeurbanne, France
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