Air quality monitoring system using lichens as bioindicators in Central Argentina

Assessing Tunisia's urban air quality using combined lichens and Sentinel-5 satellite integration

In Tunisia, urban air pollution is becoming a bigger problem. This study used a combined strategy of biomonitoring with lichens and satellite mapping with Sentinel-5 satellite data processed in Google Earth Engine (GEE) to assess the air quality over metropolitan Tunis. Lichen diversity was surveyed across the green spaces of the Faculty of Science of Tunisia sites, revealing 15 species with a predominance of pollution-tolerant genera. The Index of Atmospheric Purity (IAP) calculated from the lichen data indicated poor air quality. Spatial patterns of pollutants sulfur dioxide (SO2), ozone (O3), nitrogen dioxide (NO2), carbon monoxide (CO), and aerosol index across Greater Tunis were analyzed from Sentinel-5 datasets on the GEE platform. The higher values of these indices in the research area indicate that it may be impacted by industrial activity and highlight the considerable role that vehicle traffic plays in air pollution. The results of the IAP, IBL, and the combined ground-based biomonitoring and satellite mapping techniques confirm poor air quality and an environment affected by atmospheric pollutants which will enable proactive air quality management strategies to be put in place in Tunisia's rapidly expanding cities.

Morpho-anatomical variations of Parmotrema pilosum (Parmeliaceae, Ascomycota) in fragmented forests of central Argentina: relationship between forest cover and distance to crops

Forest vegetation is key for buffering microclimatic factors and regulating atmospheric deposition. Epiphytic lichens are sensitive to these factors and can indicate the overall health status of the ecosystem. Specifically, the analysis of morpho-anatomical variations allows us to understand the degree of tolerance or sensitivity of these organisms exposed to agricultural crops and how vegetation might buffer this response. We analyzed variations in vegetative and reproductive characters and injuries in thalli of Parmotrema pilosum as a response to distance to crops and forest cover. The study was conducted in forest patches of the Espinal in central Argentina, an ecosystem threatened by agricultural activity. We selected 10 sites with different forest cover areas and two collection points differing in distance to crops: sites adjacent to (0 m) and far from (150 m) crops. We collected five thalli from each collection point and analyzed variations in morpho-anatomical characters at macro- and microscopic levels. We found a lower number of algae and a higher proportion of simple cilia in individuals at points adjacent to crops. At points with low forest cover, a thinner upper cortex was observed, whereas at points with greater forest cover, an increase of necrosis and greater presence of apothecia were detected. Bleaching was the most frequent injury at sites adjacent to crops, decreasing with increasing forest cover. Conservation and reforestation of Espinal forest patches would promote the propagation of lichens affected by agricultural practices.

Phylogeographic reconstructions can be biased by ancestral shared alleles: The case of the polymorphic lichen Bryoria fuscescens in Europe and North Africa

Large phylogeographic studies on lichens are scarce, and none involves a single species within which different lineages show fixed alternative dispersal strategies. We investigated Bryoria fuscescens (including B. capillaris) in Europe and western North Africa by phenotypically characterizing 1400 specimens from 64 populations and genotyping them with 14 microsatellites. We studied population structure and genetic diversity at the local and continental scales, discussed the post-glacial phylogeography, and compared dispersal capacities of phenotypes with and without soralia. Our main hypothesis is that the estimated phylogeography, migration routes, and dispersal capacities may be strongly biased by ancestral shared alleles. Scandinavia is genetically the richest area, followed by the Iberian Peninsula, the Carpathians, and the Alps. Three gene pools were detected: two partially linked to phenotypic characteristics, and the third one genetically related to the American sister species B. pseudofuscescens. The comparison of one gene pool producing soredia and one not, suggested both as panmictic, with similar levels of isolation by distance (IBD). The migration routes were estimated to span from north to south, in disagreement with the assessed glacial refugia. The presence of ancestral shared alleles in distant populations can explain the similar IBD levels found in both gene pools while producing a false signal of panmixia, and also biasing the phylogeographic reconstruction. The incomplete lineage sorting recorded for DNA sequence loci also supports this hypothesis. Consequently, the high diversity in Scandinavia may rather come from recent immigration into northern populations than from an in situ diversification. Similar patterns of ancestral shared polymorphism may bias the phylogeographical reconstruction of other lichen species.

Impact of atmospheric pollution on asthma and bronchitis based on lichen biomonitoring using IAP, IHI and GIS in Algiers Bay (Algeria)

We investigated the association between air pollution and asthma and bronchitis hospital admissions in Algiers city (Algeria). In addition, we used geographic information systems (GIS) and statistical methods to evaluate their correlation with the atmospheric pollution estimated by the lichen biomonitoring method of the index of atmospheric purity (IAP), the index of human impact (IHI) and environmental parameters. Thus, we georeferenced 976 local patients (including 771 patients with asthma and 205 patients with bronchitis). Then, we compared the patients to the spatial distribution of IAP in thirty-five areas (communities). The results revealed a significant difference in the mean spatial variation in the diseases among those areas. In fact, maps and generalized linear models (GLMs) revealed a significant negative correlation between IAP and diseases. Therefore, redundancy analysis (RDA) and Monte Carlo tests described a significant effect of IAP, urbanization and the number of roads on the distribution of diseases. We hope our findings contribute to enriching the literature on health research with a low-cost method of monitoring outdoor air pollution.

IMA Genome - F13: Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti

Draft genomes of the fungal species Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti are presented. Physcia stellaris is an important lichen forming fungus and Ambrosiella cleistominuta is an ambrosia beetle symbiont. Cercospora brassicicola and C. citrullina are agriculturally relevant plant pathogens that cause leaf-spots in brassicaceous vegetables and cucurbits respectively. Teratosphaeria pseudoeucalypti causes severe leaf blight and defoliation of Eucalyptus trees. These genomes provide a valuable resource for understanding the molecular processes in these economically important fungi.

Effect of UV-B radiation on the content of UV-B absorbing compounds and photosynthetic parameters in Parmotrema austrosinense from two contrasting habitats

We studied the resistance of Parmotrema austrosinense to UV-B stress. We focused on the effects of a high dose UV-B radiation on the content of chlorophylls, carotenoids and UV-B screening compounds. Photosynthetic parameters were measured by chlorophyll fluorescence (potential and effective quantum yields, photochemical and non-photochemical quenching) and evaluated in control and UV-B-treated lichens. Lichens from two different locations in Cordoba, Argentina, were selected: (i) high altitude and dry plots at (Los Gigantes) and (ii) lowland high salinity plots (Salinas Grandes). UV-B treatment led to a decrease in the content of photosynthetic pigments and UV-B screens (absorbance decrease in 220-350 nm) in the samples from Salinas Grandes, while in Los Gigantes samples, an increase in UV-B screen content was observed. Chlorophyll fluorescence parameters showed a UV-B-induced decline in F_V /F_M , Φ_PSII and qP indicating limitation of primary photosynthetic processes in photosystem II (PSII) of symbiotic alga, more pronounced in Salinas Grandes samples. Protective mechanism of PSII were activated by the UV-B treatment to a higher extent in samples from Salinas Grandes (NPQ 0.48) than in Los Gigantes samples (NPQ 0.26). We concluded that site-related characteristics, and in particular different UV-B radiation regimen, had a strong effect on resistance of the photosynthetic apparatus of P. austrosinense to UV-B radiation.

Approach to spatialize local to long-range atmospheric metal input (Cd, Cu, Hg, Pb) in epiphytic lichens over a meso-scale area (Pyrénées-Atlantiques, southwestern France)

Geographically based investigations into atmospheric bio-monitoring usually provide information on concentration or occurrence data and spatial trends of specific contaminants over a specified study area. In this work, an original approach based on geographic information system (GIS) was used to establish metal contents (Hg, Cu, Pb, and Cd) in epiphytic lichens from 90 locations as atmospheric bio-monitors over a meso-scale area (Pyrénées-Atlantiques, southwestern France). This approach allows the integration of the heterogeneity of the territory and optimization of the sampling sites based on both socioeconomical and geophysical parameters (hereafter defined as urban, industrial, agricultural, and forested areas). The sampling strategy was first evaluated in several sites (n = 15) over different seasons and years in order to follow the temporal variability of the atmospheric metal input in lichens. The results demonstrate that concentration ranges remain constant over different sampling periods in "rural" areas (agricultural and forested). Higher variability is observed in the "anthropized" urban and industrial areas in relation to local atmospheric inputs. In this context, metal concentrations in lichens over the whole study show that (1) Hg and Cd are homogeneous over the whole territory (0.14 ± 0.04 and 0.38 ± 0.26 mg/kg, respectively), whereas (2) Cu and Pb are more concentrated in "anthropized" areas (9.3 and 11.9 mg/kg, respectively) than in "rural" ones (6.8 and 6.0 mg/kg, respectively) (Kruskall-Wallis, K(Cu) = 13.7 and K(Pb) = 9.7, p < 0.00001). They also showed a significant local enrichment for all metals in many locations in the Pays Basque (West) mainly due to metal and steel industrial activities. This confirms the local contribution of this contamination source over a wider geographic scale. A multiple linear regression model was applied to give an integrated spatialization of the data. This showed significant relationships for Pb and Cu (adjusted r (2) of 0.39 and 0.45, respectively), especially with regards to variables such as industry and road densities (source factors) and elevation or water balance (remote factors). These results show that an integrated GIS-based sampling strategy can improve biomonitoring data distribution and allows better differentiation of local and long-range contamination.

Selection of suitable lichen bioindicator species for monitoring climatic variability in the Himalaya

Interspecific comparison in metals and PAHs profile in three lichen species, Flavoparmelia caperata, Phaeophyscia hispidula and Pyxine sorediata, were studied in different altitudinal gradients of the Western Himalayas. The species collected from 14 sites, enroute from Dehradun to Morinda (243 Km) including the trekking route 42 Km from Taluka to Morinda having an altitudinal gradient between 850-3,750 m, were analysed for their metals and PAHs. The species showed similar metal as well as PAHs profile under similar altitudinal gradients in the sequence of F. caperata > P. hispidula > P. sorediata. The difference in pollutant concentrations within each lichen species may be related to intrinsic attributes of the species, such as thallus morphology and the presence of lichen substances which are responsible for the sensitivity and accumulation potential of a particular species. Novelty of the present study lies on the fact that all the species show a similar efficiency of reflecting the environmental condition of the area, albeit the coefficient values of individual species for individual pollutant obtained by three-factor ANOVA revealed that the bioaccumulation affinity of F. caperata is significantly higher than P. hispidula and P. sorediata. For individual metals, F. caperata has a higher affinity for Al, Cr, Fe, Pb and Zn while P. hispidula has a significant positive affinity for Fe and Pb. PCA analysis of sites with respect to pollutant revealed the segregation of sites based on source and distance. Combining the bioaccumulation potential parameters along with geostatistical (GIS) techniques establishes that F. caperata species is a better accumulator of metals and PAHs in comparison to P. hispidula and P. sorediata in the temperate regions of the Himalaya.

Lichens as a useful mapping tool?--an approach to assess atmospheric N loads in Germany by total N content and stable isotope signature

To assess whether nitrogen (N) content and δ(15)N ratios in nitrophytic lichen species (Xanthoria parietina (L.) Th. Fr. (1860) and Physcia spp. (Schreb.) Michaux (1803)) reflect the quantity and quality of atmospheric N loads, 348 lichen samples from 174 sampling grid cells were investigated in the western part of Germany. The analysed lichen N content ranged between 0.98 and 4.28 % and δ(15)N ratios between -15.2 and -1.3 ‰. Based on the N concentrations and the δ(15)N ratios of lichens, different landscape categories and coupled N deposition rates could be inferred for different regions of Germany. By analysing environmental variables like altitude, ammonia emission density, livestock unit and different defined deposition types, a direct relationship was found between lichen chemistry and N compounds produced from agricultural activity. The results support the development of a monitoring method which could be used nationally or even internationally to support current N deposition measurements, by providing reliable information on the quantity and quality of N deposition in high N environments.