Physical and chemical properties of seawater during 2013-2015 in the 400 m water column in the northern Gulf of Aqaba, Red Sea

Insights Into the Cultivable Bacterial Fraction of Sediments From the Red Sea Mangroves and Physiological, Chemotaxonomic, and Genomic Characterization of Mangrovibacillus cuniculi gen. nov., sp. nov., a Novel Member of the Bacillaceae Family

Mangrove forests are dynamic and productive ecosystems rich in microbial diversity; it has been estimated that microbial cells in the mangrove sediments constitute up to 91% of the total living biomass of these ecosystems. Despite in this ecosystem many of the ecological functions and services are supported and/or carried out by microorganisms (e.g., nutrient cycling and eukaryotic-host adaptation), their diversity and function are overlooked and poorly explored, especially for the oligotrophic mangrove of the Red Sea coast. Here, we investigated the cultivable fraction of bacteria associated with the sediments of Saudi Arabian Red Sea mangrove forest by applying the diffusion-chamber-based approach in combination with oligotrophic medium and long incubation time to allow the growth of bacteria in their natural environment. Cultivation resulted in the isolation of numerous representatives of Isoptericola (n = 51) and Marinobacter (n = 38), along with several less abundant and poorly study taxa (n = 25) distributed across ten genera. Within the latest group, we isolated R1DC41^T, a novel member of the Bacillaceae family in the Firmicutes phylum. It showed 16S rRNA gene similarity of 94.59–97.36% with closest relatives of Rossellomorea (which was formerly in the Bacillus genus), Domibacillus, Bacillus, and Jeotgalibacillus genera. Based on the multilocus sequence analysis (MLSA), R1DC41^T strain formed a separated branch from the listed genera, representing a novel species of a new genus for which the name Mangrovibacillus cuniculi gen. nov., sp. nov. is proposed. Genomic, morphological, and physiological characterizations revealed that R1DC41^T is an aerobic, Gram-stain-variable, rod-shaped, non-motile, endospore-forming bacterium. A reduced genome and the presence of numerous transporters used to import the components necessary for its growth and resistance to the stresses imposed by the oligotrophic and salty mangrove sediments make R1DC41^T extremely adapted to its environment of origin and to the competitive conditions present within.

Heterotrophic Bacterioplankton Growth and Physiological Properties in Red Sea Tropical Shallow Ecosystems With Different Dissolved Organic Matter Sources

Despite the key role of heterotrophic bacterioplankton in the biogeochemistry of tropical coastal waters, their dynamics have been poorly investigated in relation to the different dissolved organic matter (DOM) pools usually available. In this study we conducted four seasonal incubations of unfiltered and predator-free seawater (Community and Filtered treatment, respectively) at three Red Sea coastal sites characterized by different dominant DOM sources: Seagrass, Mangrove, and Phytoplankton. Bacterial abundance, growth and physiological status were assessed by flow cytometry and community composition by 16S rRNA gene amplicons. The Seagrass site showed the highest initial abundances (6.93 ± 0.30 × 105 cells mL-1), coincident with maximum DOC concentrations (>100 μmol C L-1), while growth rates peaked at the Mangrove site (1.11 ± 0.09 d-1) and were consistently higher in the Filtered treatment. The ratio between the Filtered and Community maximum bacterial abundance (a proxy for top-down control by protistan grazers) showed minimum values at the Seagrass site (1.05 ± 0.05) and maximum at the Phytoplankton site (1.24 ± 0.30), suggesting protistan grazing was higher in open waters, especially in the first half of the year. Since the Mangrove and Seagrass sites shared a similar bacterial diversity, the unexpected lack of bacterial response to predators removal at the latter site should be explained by differences in DOM characteristics. Nitrogen-rich DOM and fluorescent protein-like components were significantly associated with enhanced specific growth rates along the inshore-offshore gradient. Our study confirms the hypotheses that top-down factors control bacterial standing stocks while specific growth rates are bottom-up controlled in representative Red Sea shallow, oligotrophic ecosystems.

Evaluation of the Gulf of Aqaba Coastal Water, Jordan

(1) Background: The Gulf of Aqaba (GoA) supports unique and diverse marine ecosystems. It is one of the highest anthropogenically impacted coasts in the Middle East region, where rapid human activities are likely to degrade these naturally diverse but stressed ecosystems. (2) Methods: Various water quality parameters were measured to assess the current status and conditions of GoA seawater including pH, total dissolved solids (TDS), total alkalinity (TA), Cl−, NO3−, SO42−, PO43−, NH4+, Ca2+, Mg2+, Na+, K+, Sr, Cd, Co, Cr, Cu, Fe, Mn, Pb, and Zn. (3) Results: The pH values indicated basic coastal waters. The elevated levels of TDS with an average of about 42 g/L indicated highly saline conditions. Relatively low levels of inorganic nutrients were observed consistent with the prevalence of oligotrophic conditions in GoA seawater. The concentrations of Ca2+, Mg2+, Na+, K+, Sr, Cl−, and SO42− in surface layer varied spatially from about 423–487, 2246–2356, 9542–12,647, 513–713, 9.2–10.4, 22,173–25,992, and 317–407 mg/L, respectively. The average levels of Cd, Co, Cr, Cu, Fe, Mn, Pb and Zn ranged from 0.51, 0.38, 1.44, 1.29, 0.88, 0.38, and 6.05 µg/L, respectively. (4) Conclusions: The prevailing saline conditions of high temperatures, high evaporation rates, the water stratification and intense dust storms are major contributing factors to the observed seawater chemistry. The surface distribution of water quality variables showed spatial variations with no specific patterns, except for metal contents which exhibited southward increasing trends, closed to the industrial complex. The vast majority of these quality parameters showed relatively higher values compared to those of other regions.