Outbreeding causes developmental instability in Drosophila subobscura

Microbiome and epigenetic variation in wild fish with low genetic diversity

Non-genetic sources of phenotypic variation, such as the epigenome and the microbiome, could be important contributors to adaptive variation for species with low genetic diversity. However, little is known about the complex interaction between these factors and the genetic diversity of the host, particularly in wild populations. Here, we examine the skin microbiome composition of two closely-related mangrove killifish species with different mating systems (self-fertilising and outcrossing) under sympatric and allopatric conditions. This allows us to partition the influence of the genotype and the environment on their microbiome and (previously described) epigenetic profiles. We find the diversity and community composition of the skin microbiome are strongly shaped by the environment and, to a lesser extent, by species-specific influences. Heterozygosity and microbiome alpha diversity, but not epigenetic variation, are associated with the fluctuating asymmetry of traits related to performance (vision) and behaviour (aggression). Our study identifies that a proportion of the epigenetic diversity and microbiome differentiation is unrelated to genetic variation, and we find evidence for an associative relationship between microbiome and epigenetic diversity in these wild populations. This suggests that both mechanisms could potentially contribute to variation in species with low genetic diversity.

Fluctuating asymmetry as biomarker of pesticides exposure in the Italian wall lizards (Podarcis siculus)

The extensive use of pesticides in agricultural environments produces drastic effects on wildlife, hence the need for less invasive indicators of environmental stress to monitoring the impact of agriculture treatments on biological systems. Fluctuating asymmetry (FA), as measure of developmental instability, has recently been proposed as reliable biomarker of populations stress due to environmental disturbance. We investigate femoral pores (FP) and dorsal head shape (HS) traits in populations of the Italian wall lizard inhabiting agricultural environments to examine whether different pesticide exposures (conventional, organic and control) can cause distinctive degree of FA. High-resolution photographs of FP and HS were taken in the field with a digital camera. The number of FP were counted twice on both sides and HS was analysed using geometric morphometrics with 25 landmarks and 12 semilandmarks. Individuals under conventional management showed higher levels of FA compared to control ones, and females exhibited higher FA levels than males for the FP. However, no significant difference was found for the HS trait. Our study provided evidence that FA may have a real potential as biomarker of population stress in wall lizards, highlighting the importance in the choice of the experimental design and the traits adopted for estimating DI.

Effect of lead pollution on fitness and its dependence on heterozygosity in Drosophila subobscura

Lead is one of the most present contaminants in the environment, and different species respond differently to this type of polution. If combined with genomic stress, lead may act synergistically, causing significant decrease of fitness components. We used two genetically diverse Drosophila subobscura populations (regarding both putatively adaptive inversion and microsatellite loci polymorphisms) originating from two ecologically distinct habitats. To establish different levels of genome heterozygosity, series of intraline, intrapopulation and interpopulation crosses were made. The progeny were reared on a standard medium and a medium with 200 μg/mL of lead acetate. Development time was significantly extended to all groups reared on lead. The progeny of intraline crosses showed significantly extended development time compared to all other groups. The obtained results suggest that genome heterozygosity reduces the effect of lead pollution.

Lizards from urban areas are more asymmetric: using fluctuating asymmetry to evaluate environmental disturbance

The increase in human activities that leads to wildlife decline and species extinction poses an urgent need for simple indicators of environmental stress in animal populations. Several studies have suggested that fluctuating asymmetry (FA) can be an easy, direct measure of developmental instability because it is associated to environmental stress and, as such, it can be a useful indicator of population disturbance. We examined three different morphological traits in urban and rural populations of the common wall lizard (Podarcis muralis) to test whether anthropogenic disturbance causes an increase in FA. Compared to rural populations, urban ones showed higher levels of FA in all analyzed traits, thus providing evidence that FA can respond to anthropogenic disturbance. However, we also found significant differences in FA among traits, where femoral pores and subdigital lamellae, traits with a functional relevance, were more stable developmentally compared to supracilliar granules which have no evident function. Unsigned FA [abs(right-left)] exhibited significant, but weak, positive correlations among traits, indicating that developmental noise does not have a uniform effect across characters and thus questioning the view of developmental stability as an organism-wide property. The degree of signed FA (right-left) was more similar between structurally associated traits, possibly as an outcome of morphological integration. In conclusion, our results demonstrate that FA can be a reliable indicator of disturbance provided that it is analyzed on multiple traits simultaneously and examined at the population level.

Absence of linkage disequilibria between chromosomal arrangements and mtDNA haplotypes in natural populations of Drosophila subobscura from the Balkan Peninsula

The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.

Heterozygosity maintains developmental stability of sternopleural bristles in Drosophila subobscura interpopulation hybrids

Interpopulation hybridization can lead to outbreeding depression within affected populations due to breakdown of coadapted gene complexes or heterosis in hybrid populations. One of the principal methods commonly used to estimate the level of developmental instability (DI) is fluctuating asymmetry (FA). We used three genetically differentiated Drosophila subobscura populations according to inversion polymorphism analysis and measured the variability of sternopleural bristle number and change in FA across generations P, F1, and F2 between intra- and interpopulation hybrids of D. subobscura. The mean variability of sternopleural bristle number in intra- and interpopulation hybrids of D. subobscura across generations cannot determine whether the changes at the level of developmental homeostasis are due exclusively to genomic coadaptation or to heterozygosity. Phenotypic variance (V(p)) and FA of sternopleural bristle number was higher in interpopulation than in intrapopulation hybrids across generations. F1 hybrids were more developmentally stable compared to each parental population in both intra- and interpopulation hybrids. The most probable mechanism providing developmental homeostasis is heterozygote or hybrid superiority, also called overdominace. However, V(p) was higher and FA lower in the F2 generation when compared to F1, due mainly to crossing-over in the formation of F2.