1
|
Gomes SSL, Lopes JML, de Matos EM, Cabral EG, Azevedo ALS, Machado MA, de Campos JMS, Neto LM, Viccini LF. Phenotypic variation seems not to be associated with the genetic profile in Zygopetalum (Orchidaceae): a case study of a high-elevation rocky complex. Mol Biol Rep 2024; 51:582. [PMID: 38678168 DOI: 10.1007/s11033-024-09528-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 04/05/2024] [Indexed: 04/29/2024]
Abstract
BACKGROUND Hybridization associated with polyploidy studies is rare in the tropics. The genus Zygopetalum (Orchidaceae) was investigated here as a case study of Neotropical plants. In the rocky highlands of the Ibitipoca State Park (ISP), southeast Brazil, individuals with intermediate colors and forms between the species Z. maculatum and Z. triste were commonly identified. METHODS AND RESULTS Chromosomal analysis and DNA quantity showed a uniform population. Regardless of the aspects related to the color and shape of floral structures, all individuals showed 2n = 96 chromosomes and an average of 14.05 pg of DNA. Irregularities in meiosis associated with chromosome number and C value suggest the occurrence of polyploidy. The genetic distance estimated using ISSR molecular markers revealed the existence of genetic variability not related to morphological clusters. Morphometric measurements of the flower pieces revealed that Z. maculatum shows higher variation than Z. triste although lacking a defined circumscription. CONCLUSION The observed variation can be explained by the polyploid and phenotypic plasticity resulting from the interaction of the genotypes with the heterogeneous environments observed in this habitat.
Collapse
Affiliation(s)
- Shaiany Sabrina Lopes Gomes
- Biology Department/Genetic and Biotechnology Lab, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
| | - Juliana Mainenti Leal Lopes
- Biology Department/Genetic and Biotechnology Lab, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
| | - Elyabe Monteiro de Matos
- Biology Department/Genetic and Biotechnology Lab, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
| | - Elisa Guimarães Cabral
- Biology Department/Genetic and Biotechnology Lab, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
| | | | | | | | - Luiz Menini Neto
- Botany Department, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
| | - Lyderson Facio Viccini
- Biology Department/Genetic and Biotechnology Lab, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil.
| |
Collapse
|
2
|
Zhang HP, Tao ZB, Trunschke J, Shrestha M, Scaccabarozzi D, Wang H, Ren ZX. Reproductive Isolation Among Three Nocturnal Moth-Pollinated Sympatric Habenaria Species (Orchidaceae). FRONTIERS IN PLANT SCIENCE 2022; 13:908852. [PMID: 35812980 PMCID: PMC9257206 DOI: 10.3389/fpls.2022.908852] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
Comparison and quantification of multiple pre- and post-pollination barriers to interspecific hybridization are important to understand the factors promoting reproductive isolation. Such isolating factors have been studied recently in many flowering plant species which seek after the general roles and relative strengths of different pre- and post-pollination barriers. In this study, we quantified six isolating factors (ecogeographic isolation, phenological isolation, pollinator isolation, pollinia-pistil interactions, fruit production, and seed development) that could possibly be acting as reproductive barriers at different stages among three sympatric Habenaria species (H. limprichtii, H. davidii, and H. delavayi). These three species overlap geographically but occupy different microhabitats varying in soil water content. They were isolated through pollinator interactions both ethologically (pollinator preference) and mechanically (pollinia attachment site), but to a variable degree for different species pairs. Interspecific crosses between H. limprichtii and H. davidii result in high fruit set, and embryo development suggested weak post-pollination barriers, whereas bidirectional crosses of H. delavayi with either of the other two species fail to produce fruits. Our results revealed that pollinators were the most important isolating barrier including both ethological and mechanical mechanisms, to maintain the boundaries among these three sympatric Habenaria species. Our study also highlights the importance of a combination of pre-and post-pollination barriers for species co-existence in Orchidaceae.
Collapse
Affiliation(s)
- Hai-Ping Zhang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Zhi-Bin Tao
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences (CAS), Wuhan, China
| | - Judith Trunschke
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
| | - Mani Shrestha
- Department of Disturbance Ecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Daniela Scaccabarozzi
- School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China
- School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia
| | - Hong Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
- Lijiang Forest Biodiversity National Observation and Research Station, Lijiang, China
| | - Zong-Xin Ren
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
- Lijiang Forest Biodiversity National Observation and Research Station, Lijiang, China
| |
Collapse
|
3
|
Arida BL, Scopece G, Machado RM, Moraes AP, Forni-Martins E, Pinheiro F. Reproductive barriers and fertility of two neotropical orchid species and their natural hybrid. Evol Ecol 2021. [DOI: 10.1007/s10682-020-10095-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
|
4
|
Scopece G, Palma-Silva C, Cafasso D, Lexer C, Cozzolino S. Phenotypic expression of floral traits in hybrid zones provides insights into their genetic architecture. THE NEW PHYTOLOGIST 2020; 227:967-975. [PMID: 32237254 DOI: 10.1111/nph.16566] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Accepted: 03/15/2020] [Indexed: 06/11/2023]
Abstract
Information on the genetic architecture of phenotypic traits is helpful for constructing and testing models of the ecoevolutionary dynamics of natural populations. For plant groups with long life cycles there is a lack of line cross experiments that can unravel the genetic architecture of loci underlying quantitative traits. To fill this gap, we propose the use of variation for phenotypic traits expressed in natural hybrid zones as an alternative approach. We used data from orchid hybrid zones and compared expected and observed patterns of phenotypic trait expression in different early-generation hybrid classes identified by molecular genetic markers. We found evidence of additivity, dominance, and epistatic interactions for different phenotypic traits. We discuss the potential of this approach along with its limitations and suggest that it may represent a realistic way to gain an initial insight into the heritability and genomic architecture of traits in organismal groups with complex life history, such as orchids and many others.
Collapse
Affiliation(s)
- Giovanni Scopece
- Department of Biology, University of Naples 'Federico II', Complesso Universitario MSA, I-80126, Naples, Italy
| | - Clarisse Palma-Silva
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Rua Monteiro Lobato 255, 13083-862, Campinas, Brazil
| | - Donata Cafasso
- Department of Biology, University of Naples 'Federico II', Complesso Universitario MSA, I-80126, Naples, Italy
| | - Christian Lexer
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030, Wien, Austria
| | - Salvatore Cozzolino
- Department of Biology, University of Naples 'Federico II', Complesso Universitario MSA, I-80126, Naples, Italy
| |
Collapse
|
5
|
Sujii PS, Cozzolino S, Pinheiro F. Hybridization and geographic distribution shapes the spatial genetic structure of two co-occurring orchid species. Heredity (Edinb) 2019; 123:458-469. [PMID: 31391556 PMCID: PMC6781141 DOI: 10.1038/s41437-019-0254-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 07/11/2019] [Accepted: 07/17/2019] [Indexed: 11/09/2022] Open
Abstract
Multiple ecological and life-history traits shape the fine-scale spatial genetic structure (FSGS) of a given population. The occurrence in core versus peripheral populations, levels of outcrossing, pollen and seed dispersal, and hybridization are important biological properties that influence the kinship of individuals within populations. We examined spatial genetic structure within 15 populations of Epidendrum fulgens and E. puniceoluteum distributed along a linear gradient of Brazilian coastal vegetation, including both allopatric and sympatric populations where the two orchid species hybridize. We analyzed 581 mapped specimens using nine simple sequence repeat loci, aiming to investigate how geographic distribution and hybridization shape within-population FSGS. A significant increase in FSGS was found towards peripheral populations, compared to core populations. Analysis of short-distance and long-distance components of FSGS identified biparental inbreeding and higher levels of FSGS at peripheral populations, when compared to core populations. In contrast, the relatively high density of reproductive adults in core populations potentially leads to highly overlapping seed and pollen movement, decreasing FSGS. Hybridization was an important factor shaping within-population spatial genetic structure at sympatric sites, decreasing the FSGS observed in parental species. Our results indicate that different ecological forces act in concert to create a gradient of FSGS along species distribution ranges, shaped by extensive levels of intraspecific and interspecific gene exchange.
Collapse
Affiliation(s)
| | - Salvatore Cozzolino
- Department of Biology, Complesso Universitario di Monte S. Angelo, Università degli Studi di Napoli Federico II, 80126, Napoli, Italy
| | - Fábio Pinheiro
- Departamento de Biologia Vegetal, Universidade Estadual de Campinas, Instituto de Biologia, Campinas, Brazil.
| |
Collapse
|
6
|
Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii. Heredity (Edinb) 2019; 124:223-235. [PMID: 31186532 DOI: 10.1038/s41437-019-0239-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 05/10/2019] [Accepted: 05/14/2019] [Indexed: 11/08/2022] Open
Abstract
Genetic and phenotypic analyses of independent secondary contact zones between certain pairs of divergent populations offer powerful opportunities to assess whether the consequences vary with different environmental backgrounds. Populations of the ice goby Leucopsarion petersii are distributed throughout the Japanese archipelago and comprise genetically and phenotypically divergent groups in the Japan Sea and the Pacific Ocean. In particular, populations in the Japan Sea have a larger body size and numbers of vertebrae than those in the Pacific Ocean. Herein, we performed integrated analyses of genotypes and phenotypes of two independent secondary contact zones and investigated their consequences. Population genetic analyses revealed asymmetric introgression of the mitochondrial genome of either lineage relative to little admixture of nuclear genomes in both secondary contact zones. On phenotype analyses, vertebral numbers were clearly explained by nuclear genomic ancestry in both secondary contact zones, whereas body size was not, suggesting that a little introgression of nuclear genes regulates body size. Actually, we observed biased introgression of a candidate gene, neuropeptide Y (NPY), which potentially controls body size in the ice goby. Moreover, the body size changes in the introgressed populations possibly affect the introgression patterns of mitochondrial genomes across these zones. Collectively, our results demonstrated that genomic and phenotypic consequences of secondary contact varied in marine variable environments.
Collapse
|
7
|
Mota MR, Pinheiro F, Leal BSS, Wendt T, Palma-Silva C. The role of hybridization and introgression in maintaining species integrity and cohesion in naturally isolated inselberg bromeliad populations. PLANT BIOLOGY (STUTTGART, GERMANY) 2019; 21:122-132. [PMID: 30195257 DOI: 10.1111/plb.12909] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Accepted: 09/06/2018] [Indexed: 05/02/2023]
Abstract
Hybridization is a widespread phenomenon present in numerous lineages across the tree of life. Its evolutionary consequences range from effects on the origin and maintenance, to the loss of biodiversity. We studied genetic diversity and intra- and interspecific gene flow between two sympatric populations of closely-related species, Pitcairnia flammea and P. corcovadensis (Bromeliaceae), which are adapted to naturally fragmented Neotropical inselbergs, based on nuclear and plastidial DNA. Our main results indicate a strong reproductive isolation barrier, although low levels of interspecific gene flow were observed in both sympatric populations. The low rates of intraspecific gene flow observed for both P. corcovadensis and P. flammea populations corroborate the increasing body of evidence that inselberg bromeliad species are maintained as discrete evolutionary units despite the presence of low genetic connectivity. Nuclear patterns of genetic diversity and gene flow revealed that hybridization and introgression might not cause species extinction via genetic assimilation of the rare P. corcovadensis. In the face of reduced intraspecific gene exchange, hybridization and introgression may be important aspects of the Pitcairnia diversification process, with a positive evolutionary impact at the bromeliad community level, and thus contribute to increasing and maintaining genetic diversity in local isolated inselberg populations.
Collapse
Affiliation(s)
- M R Mota
- Departamento de Ecologia, Instituto de Biociências, Universidade Estadual Paulista, Rio Claro, Brazil
| | - F Pinheiro
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| | - B S S Leal
- Departamento de Ecologia, Instituto de Biociências, Universidade Estadual Paulista, Rio Claro, Brazil
| | - T Wendt
- Departamento de Botânica, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - C Palma-Silva
- Departamento de Ecologia, Instituto de Biociências, Universidade Estadual Paulista, Rio Claro, Brazil
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil
| |
Collapse
|
8
|
Neri J, Wendt T, Palma-Silva C. Natural hybridization and genetic and morphological variation between two epiphytic bromeliads. AOB PLANTS 2018; 10:plx061. [PMID: 29308124 PMCID: PMC5751037 DOI: 10.1093/aobpla/plx061] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Accepted: 11/22/2017] [Indexed: 05/18/2023]
Abstract
Reproductive isolation is of fundamental importance for maintaining species boundaries in sympatry. Here, we examine the genetic and morphological differences between two closely related bromeliad species: Vriesea simplex and Vriesea scalaris. Furthermore, we examined the occurrence of natural hybridization and discuss the action of reproductive isolation barriers. Nuclear genomic admixture suggests hybridization in sympatric populations, although interspecific gene flow is low among species in all sympatric zones (Nem < 0.5). Thus, morphological and genetic divergence (10.99 %) between species can be maintained despite ongoing natural hybridization. Cross-evaluation of our genetic and morphological data suggests that species integrity is maintained by the simultaneous action of multiple barriers, such as divergent reproductive systems among species, differences in floral traits and low hybrid seed viability.
Collapse
Affiliation(s)
- Jordana Neri
- Programa de Pós Graduação em Botânica, Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, São Cristóvão, Rio de Janeiro, RJ, Brazil
| | - Tânia Wendt
- Departamento de Botânica, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Clarisse Palma-Silva
- Programa de Pós Graduação em Ecologia, Departamento de Ecologia – Universidade Estadual Paulista Julio Mesquita Filho, Rio Claro, SP, Brazil
| |
Collapse
|
9
|
Esposito F, Vereecken NJ, Gammella M, Rinaldi R, Laurent P, Tyteca D. Characterization of sympatric Platanthera bifolia and Platanthera chlorantha (Orchidaceae) populations with intermediate plants. PeerJ 2018; 6:e4256. [PMID: 29379684 PMCID: PMC5787349 DOI: 10.7717/peerj.4256] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 12/20/2017] [Indexed: 12/25/2022] Open
Abstract
Platanthera bifolia and P. chlorantha are terrestrial and rewarding orchids with a wide Eurasian distribution. Although genetically closely related, they exhibit significant morphological, phenological and ecological differences that maintain reproductive isolation between the species. However, where both species co-occur, individuals with intermediate phenotypic traits, often considered as hybrids, are frequently observed. Here, we combined neutral genetic markers (AFLPs), morphometrics and floral scent analysis (GC-MS) to investigate two mixed Platanthera populations where morphologically intermediate plants were found. Self-pollination experiments revealed a low level of autogamy and artificial crossings combined with assessments of fruit set and seed viability, showed compatibility between the two species. The results of the genetic analyses showed that morphologically intermediate plants had similar genetic patterns as the P. bifolia group. These results are corroborated also by floral scent analyses, which confirmed a strong similarity in floral scent composition between intermediate morphotypes and P. bifolia. Therefore, this study provided a much more detailed picture of the genetic structure of a sympatric zone between two closely allied species and supports the hypothesis that intermediate morphotypes in sympatry could reflect an adaptive evolution in response to local pollinator-mediated selection.
Collapse
Affiliation(s)
- Fabiana Esposito
- Earth and Life Institute—Biodiversity Research Centre, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Nicolas J. Vereecken
- Agroecology Lab, Brussels Bioengineering School, Université libre de Bruxelles (ULB), Brussels, Belgium
| | | | - Rosita Rinaldi
- Department of Biology, University of Naples Federico II, Napoli, Italy
| | - Pascal Laurent
- Unit of General Chemistry, Université Libre de Bruxelles, Brussels, Belgium
| | - Daniel Tyteca
- Earth and Life Institute—Biodiversity Research Centre, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| |
Collapse
|
10
|
Pinheiro F, Zanfra de Melo E Gouveia TM, Cozzolino S, Cafasso D, Cardoso-Gustavson P, Suzuki RM, Palma-Silva C. Strong but permeable barriers to gene exchange between sister species of Epidendrum. AMERICAN JOURNAL OF BOTANY 2016; 103:1472-1482. [PMID: 27519428 DOI: 10.3732/ajb.1600064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Accepted: 06/08/2016] [Indexed: 06/06/2023]
Abstract
PREMISE OF THE STUDY The investigation of reproductive barriers between sister species can provide insights into how new lineages arise, and how species integrity is maintained in the face of interspecific gene flow. Different pre- and postzygotic barriers can limit interspecific gene exchange in sympatric populations, and different sources of evidence are often required to investigate the role of multiple reproductive isolation (RI) mechanisms. METHODS We tested the hypothesis of hybridization and potential introgression between Epidendrum secundum and Epidendrum xanthinum, two Neotropical food-deceptive orchid species, using nuclear and plastid microsatellites, experimental crosses, pollen tube growth observations, and genome size estimates. KEY RESULTS A large number of hybrids between E. secundum and E. xanthinum were detected, suggesting weak premating barriers. The low fertility of hybrid plants and the absence of haplotype sharing between parental species indicated strong postmating barriers, reducing interspecific gene exchange and the development of advanced generation hybrids. Despite the strength of reproductive barriers, fertile seeds were produced in some backcrossing experiments, and the existence of interspecific gene exchange could not be excluded. CONCLUSIONS Strong but permeable barriers were found between E. secundum and E. xanthinum. Indeed, haplotype sharing was not detected between parental species, suggesting that introgression is limited by a combination of genic incompatibilities, including negative cytonuclear interactions. Most taxonomic uncertainties in this group were potentially influenced by incomplete RI barriers between species, which mainly occurred sympatrically.
Collapse
Affiliation(s)
- Fábio Pinheiro
- Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas 13083-862, Campinas, SP, Brazil Instituto de Botânica, Núcleo de Pesquisa do Orquidário do Estado04301-902, São Paulo, SP, Brazil
| | | | - Salvatore Cozzolino
- Dipartimento di Biologia, Complesso Universitario di Monte S. Ângelo, Università degli Studidi Napoli Federico II 80100 Napoli, Italy Institute for Sustenible Plant Protection, Consiglio Nazionale delle Ricerche, Via Madonna del Piano 10, I-50019 Sesto Fiorentino (FI), Italy
| | - Donata Cafasso
- Dipartimento di Biologia, Complesso Universitario di Monte S. Ângelo, Università degli Studidi Napoli Federico II 80100 Napoli, Italy
| | | | - Rogério Mamoru Suzuki
- Instituto de Botânica, Núcleo de Pesquisa do Orquidário do Estado04301-902, São Paulo, SP, Brazil
| | - Clarisse Palma-Silva
- Departamento de Ecologia, Universidade Estadual Paulista 13506-900, Rio Claro, SP, Brazil
| |
Collapse
|