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For: Bazopoulou D, Tavernarakis N. The NemaGENETAG initiative: large scale transposon insertion gene-tagging in Caenorhabditis elegans. Genetica 2009;137:39-46. [PMID: 19343510 DOI: 10.1007/s10709-009-9361-3] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2008] [Accepted: 03/20/2009] [Indexed: 12/01/2022]
Number Cited by Other Article(s)
1
DuMez-Kornegay RN, Baker LS, Morris AJ, DeLoach WLM, Dowen RH. Kombucha Tea-associated microbes remodel host metabolic pathways to suppress lipid accumulation. PLoS Genet 2024;20:e1011003. [PMID: 38547054 PMCID: PMC10977768 DOI: 10.1371/journal.pgen.1011003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 02/22/2024] [Indexed: 04/02/2024]  Open
2
Zhou X, Shafique K, Sajid M, Ali Q, Khalili E, Javed MA, Haider MS, Zhou G, Zhu G. Era-like GTP protein gene expression in rice. BRAZ J BIOL 2021;82:e250700. [PMID: 34259718 DOI: 10.1590/1519-6984.250700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 06/19/2021] [Indexed: 11/22/2022]  Open
3
Nance J, Frøkjær-Jensen C. The Caenorhabditis elegans Transgenic Toolbox. Genetics 2019;212:959-990. [PMID: 31405997 PMCID: PMC6707460 DOI: 10.1534/genetics.119.301506] [Citation(s) in RCA: 86] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 06/01/2019] [Indexed: 12/30/2022]  Open
4
Goh KY, Inoue T. A large transcribed enhancer region regulates C. elegans bed-3 and the development of egg laying muscles. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2018;1861:519-533. [PMID: 29481869 DOI: 10.1016/j.bbagrm.2018.02.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 02/21/2018] [Accepted: 02/21/2018] [Indexed: 01/05/2023]
5
An SMC-like protein binds and regulates Caenorhabditis elegans condensins. PLoS Genet 2017;13:e1006614. [PMID: 28301465 PMCID: PMC5373644 DOI: 10.1371/journal.pgen.1006614] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 03/30/2017] [Accepted: 02/01/2017] [Indexed: 01/17/2023]  Open
6
Chen X, Feng X, Guang S. Targeted genome engineering in Caenorhabditis elegans. Cell Biosci 2016;6:60. [PMID: 27980716 PMCID: PMC5146831 DOI: 10.1186/s13578-016-0125-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2016] [Accepted: 11/17/2016] [Indexed: 12/15/2022]  Open
7
Schumacher F, Chakraborty S, Kleuser B, Gulbins E, Schwerdtle T, Aschner M, Bornhorst J. Highly sensitive isotope-dilution liquid-chromatography-electrospray ionization-tandem-mass spectrometry approach to study the drug-mediated modulation of dopamine and serotonin levels in Caenorhabditis elegans. Talanta 2015;144:71-9. [PMID: 26452793 PMCID: PMC4600537 DOI: 10.1016/j.talanta.2015.05.057] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Revised: 05/20/2015] [Accepted: 05/23/2015] [Indexed: 01/11/2023]
8
Rüegger S, Miki TS, Hess D, Großhans H. The ribonucleotidyl transferase USIP-1 acts with SART3 to promote U6 snRNA recycling. Nucleic Acids Res 2015;43:3344-57. [PMID: 25753661 PMCID: PMC4381082 DOI: 10.1093/nar/gkv196] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Accepted: 02/24/2015] [Indexed: 02/02/2023]  Open
9
Jiang C, Chen C, Huang Z, Liu R, Verdier J. ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data. BMC Bioinformatics 2015;16:72. [PMID: 25887332 PMCID: PMC4351942 DOI: 10.1186/s12859-015-0507-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2014] [Accepted: 02/20/2015] [Indexed: 08/30/2023]  Open
10
Cornes E, Quéré CAL, Giordano-Santini R, Dupuy D. Applying antibiotic selection markers for nematode genetics. Methods 2014;68:403-8. [PMID: 24821108 DOI: 10.1016/j.ymeth.2014.04.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2014] [Revised: 04/16/2014] [Accepted: 04/18/2014] [Indexed: 01/30/2023]  Open
11
Exciting prospects for precise engineering of Caenorhabditis elegans genomes with CRISPR/Cas9. Genetics 2014;195:635-42. [PMID: 24190921 DOI: 10.1534/genetics.113.156521] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
12
Kutscher LM, Shaham S. Forward and reverse mutagenesis in C. elegans. ACTA ACUST UNITED AC 2014:1-26. [PMID: 24449699 DOI: 10.1895/wormbook.1.167.1] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
13
Chen P, Martinez-Finley EJ, Bornhorst J, Chakraborty S, Aschner M. Metal-induced neurodegeneration in C. elegans. Front Aging Neurosci 2013;5:18. [PMID: 23730287 PMCID: PMC3657624 DOI: 10.3389/fnagi.2013.00018] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Accepted: 04/05/2013] [Indexed: 11/13/2022]  Open
14
Robert VJP. Engineering the Caenorhabditis elegans genome by Mos1-induced transgene-instructed gene conversion. Methods Mol Biol 2012;859:189-201. [PMID: 22367873 DOI: 10.1007/978-1-61779-603-6_11] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
15
Vallin E, Gallagher J, Granger L, Martin E, Belougne J, Maurizio J, Duverger Y, Scaglione S, Borrel C, Cortier E, Abouzid K, Carre-Pierrat M, Gieseler K, Ségalat L, Kuwabara PE, Ewbank JJ. A genome-wide collection of Mos1 transposon insertion mutants for the C. elegans research community. PLoS One 2012;7:e30482. [PMID: 22347378 PMCID: PMC3275553 DOI: 10.1371/journal.pone.0030482] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2011] [Accepted: 12/16/2011] [Indexed: 11/24/2022]  Open
16
Of model hosts and man: using Caenorhabditis elegans, Drosophila melanogaster and Galleria mellonella as model hosts for infectious disease research. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2012;710:11-7. [PMID: 22127881 DOI: 10.1007/978-1-4419-5638-5_2] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
17
Boulin T, Hobert O. From genes to function: the C. elegans genetic toolbox. WILEY INTERDISCIPLINARY REVIEWS-DEVELOPMENTAL BIOLOGY 2011;1:114-37. [PMID: 23801671 DOI: 10.1002/wdev.1] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
18
The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit. Nat Rev Genet 2011;12:793-801. [PMID: 21969037 DOI: 10.1038/nrg3050] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
19
Giordano-Santini R, Dupuy D. Selectable genetic markers for nematode transgenesis. Cell Mol Life Sci 2011;68:1917-27. [PMID: 21431833 PMCID: PMC11115105 DOI: 10.1007/s00018-011-0670-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2011] [Revised: 03/03/2011] [Accepted: 03/10/2011] [Indexed: 11/28/2022]
20
Zeiser E, Frøkjær-Jensen C, Jorgensen E, Ahringer J. MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline. PLoS One 2011;6:e20082. [PMID: 21637852 PMCID: PMC3102689 DOI: 10.1371/journal.pone.0020082] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2011] [Accepted: 04/18/2011] [Indexed: 11/19/2022]  Open
21
The Drosophila gene disruption project: progress using transposons with distinctive site specificities. Genetics 2011;188:731-43. [PMID: 21515576 DOI: 10.1534/genetics.111.126995] [Citation(s) in RCA: 268] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
22
Verbrugghe KJC, Chan RC. Imaging C. elegans embryos using an epifluorescent microscope and open source software. J Vis Exp 2011:2625. [PMID: 21490567 PMCID: PMC3197319 DOI: 10.3791/2625] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]  Open
23
Robert VJP, Bessereau JL. Genome engineering by transgene-instructed gene conversion in C. elegans. Methods Cell Biol 2011;106:65-88. [PMID: 22118274 DOI: 10.1016/b978-0-12-544172-8.00003-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
24
Praitis V, Maduro MF. Transgenesis in C. elegans. Methods Cell Biol 2011;106:161-85. [PMID: 22118277 DOI: 10.1016/b978-0-12-544172-8.00006-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
25
Reverse genetics in eukaryotes. Biol Cell 2010;102:561-80. [PMID: 20812916 DOI: 10.1042/bc20100038] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
26
An antibiotic selection marker for nematode transgenesis. Nat Methods 2010;7:721-3. [DOI: 10.1038/nmeth.1494] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Accepted: 06/14/2010] [Indexed: 11/08/2022]
27
High-throughput screening and small animal models, where are we? Br J Pharmacol 2010;160:204-16. [PMID: 20423335 DOI: 10.1111/j.1476-5381.2010.00725.x] [Citation(s) in RCA: 183] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
28
Bessereau JL. Knock it down, switch it on. Nat Methods 2010;7:439-41. [DOI: 10.1038/nmeth0610-439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
29
Dupuy AJ. Transposon-based screens for cancer gene discovery in mouse models. Semin Cancer Biol 2010;20:261-8. [PMID: 20478384 DOI: 10.1016/j.semcancer.2010.05.003] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2010] [Revised: 05/05/2010] [Accepted: 05/10/2010] [Indexed: 01/29/2023]
30
Frøkjaer-Jensen C, Davis MW, Hollopeter G, Taylor J, Harris TW, Nix P, Lofgren R, Prestgard-Duke M, Bastiani M, Moerman DG, Jorgensen EM. Targeted gene deletions in C. elegans using transposon excision. Nat Methods 2010;7:451-3. [PMID: 20418868 PMCID: PMC2878396 DOI: 10.1038/nmeth.1454] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2009] [Accepted: 03/29/2010] [Indexed: 01/25/2023]
31
Dupuy AJ. Current Applications of Transposons in Mouse Genetics. Methods Enzymol 2010;477:53-70. [DOI: 10.1016/s0076-6879(10)77004-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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