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Lessios HA, Hendler G. Mitochondrial phylogeny of the brittle star genus Ophioderma. Sci Rep 2022; 12:5304. [PMID: 35351912 PMCID: PMC8964800 DOI: 10.1038/s41598-022-08944-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 03/11/2022] [Indexed: 11/09/2022] Open
Abstract
We reconstructed the mitochondrial phylogeny of the species of the brittle star genus Ophioderma, using sequences of the Cytochrome Oxidase I gene (COI) to address four questions: (i) Are the species of Ophioderma described on morphological evidence reflected in mitochondrial genealogy? (ii) Which species separated from which? (iii) When did speciation events occur? (iv) What is the rate of COI evolution in ophiuroids? We found that most of the 22 described species we sampled coincide with monophyletic clusters of COI sequences, but there are exceptions, most notably in the eastern Pacific, in which three undescribed species were indicated. The COI phylogeny lacks resolution in the deeper nodes, but it does show that there are four species pairs, the members of which are found on either side of the central American Isthmus. Two pairs with a genetic distance of ~ 4% between Atlantic and Pacific members were probably split during the final stages of Isthmus completion roughly 3 million years ago. The rate of divergence provided by these pairs allowed the calibration of a relaxed molecular clock. Estimated dates of divergence indicate that the lineages leading to extant species coalesce at times much older than congeneric species in other classes of echinoderms, suggesting that low extinction rates may be one of the reasons that ophiuroids are species-rich. The mean rate of COI substitution in Ophioderma is three times slower than that of echinoids. Conclusions of previous mitochondrial DNA studies of ophiuroids that relied on echinoid calibrations to determine divergence times need to be revised.
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Affiliation(s)
- H A Lessios
- Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Panama.
| | - Gordon Hendler
- Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, CA, 90007, USA
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A new cryptic species of Asteronyx Müller and Troschel, 1842 (Echinodermata: Ophiuroidea), based on molecular phylogeny and morphology, from off Pacific Coast of Japan. ZOOL ANZ 2018. [DOI: 10.1016/j.jcz.2018.03.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Taboada S, Leiva C, Bas M, Schult N, McHugh D. Cryptic species and colonization processes in
Ophryotrocha
(Annelida, Dorvilleidae) inhabiting vertebrate remains in the shallow‐water Mediterranean. ZOOL SCR 2017. [DOI: 10.1111/zsc.12239] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Sergi Taboada
- Life Sciences Department The Natural History Museum Cromwell Road SW7 5BD London UK
| | - Carlos Leiva
- Department of Evolutionary Biology, Ecology and Environmental Science Faculty of Biology Universitat de Barcelona 08028 Barcelona Spain
| | - Maria Bas
- Biodiversity Research Institute (IrBIO) Faculty of Biology Universitat de Barcelona 08028 Barcelona Spain
- Centro Austral de Investigaciones Científicas (CADIC‐CONICET) 9410 Ushuaia Argentina
| | - Nancy Schult
- Colgate University 13 Oak Drive Hamilton NY 13346 USA
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Eldon B, Riquet F, Yearsley J, Jollivet D, Broquet T. Current hypotheses to explain genetic chaos under the sea. Curr Zool 2016; 62:551-566. [PMID: 29491945 PMCID: PMC5829445 DOI: 10.1093/cz/zow094] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2016] [Accepted: 08/27/2016] [Indexed: 01/07/2023] Open
Abstract
Chaotic genetic patchiness (CGP) refers to surprising patterns of spatial and temporal genetic structure observed in some marine species at a scale where genetic variation should be efficiently homogenized by gene flow via larval dispersal. Here we review and discuss 4 mechanisms that could generate such unexpected patterns: selection, sweepstakes reproductive success, collective dispersal, and temporal shifts in local population dynamics. First, we review examples where genetic differentiation at specific loci was driven by diversifying selection, which was historically the first process invoked to explain CGP. Second, we turn to neutral demographic processes that may drive genome-wide effects, and whose effects on CGP may be enhanced when they act together. We discuss how sweepstakes reproductive success accelerates genetic drift and can thus generate genetic structure, provided that gene flow is not too strong. Collective dispersal is another mechanism whereby genetic structure can be maintained regardless of dispersal intensity, because it may prevent larval cohorts from becoming entirely mixed. Theoretical analyses of both the sweepstakes and the collective dispersal ideas are presented. Finally, we discuss an idea that has received less attention than the other ones just mentioned, namely temporal shifts in local population dynamics.
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Affiliation(s)
- Bjarki Eldon
- Museum für Naturkunde Berlin, Leibniz Institut für Evolutions- und
Biodiversitätsforschung, Berlin 10115, Germany
| | - Florentine Riquet
- Université Montpellier 2, Place Eugène Bataillon, 34095 Montpellier Cedex 5,
France
- ISEM - CNRS, UMR 5554, SMEL, 2 rue des Chantiers, Sète 34200, France
| | - Jon Yearsley
- School of Biology and Environmental Science and UCD Earth Institute,
University College Dublin, Belfield, Dublin 4, Ireland
| | - Didier Jollivet
- Centre National de la Recherche Scientifique, Team Adaptation and Biology of
Invertebrates in Extreme Environments, Station Biologique de Roscoff, Roscoff 29680,
France
- Sorbonne Universités, Université Pierre et Marie Curie, Unité Mixte de
Recherche 7144, Station Biologique de Roscoff, Roscoff 29680, France
| | - Thomas Broquet
- Sorbonne Universités, Université Pierre et Marie Curie, Unité Mixte de
Recherche 7144, Station Biologique de Roscoff, Roscoff 29680, France
- Centre National de la Recherche Scientifique, Team Diversity and
Connectivity of Coastal Marine Landscapes, Station Biologique de Roscoff, Roscoff 29680,
France
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Taboada S, Pérez-Portela R. Contrasted phylogeographic patterns on mitochondrial DNA of shallow and deep brittle stars across the Atlantic-Mediterranean area. Sci Rep 2016; 6:32425. [PMID: 27585743 PMCID: PMC5009426 DOI: 10.1038/srep32425] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Accepted: 08/05/2016] [Indexed: 12/20/2022] Open
Abstract
Previous studies on Ophiothrix in European waters demonstrated the existence of two distinct species, Ophiothrix fragilis and Ophiothrix sp. II. Using phylogenetic and species delimitation techniques based on two mitochondrial genes (cytochrome c oxidase I and 16S rRNA) we prove the existence of a new congeneric species (Ophiothrix sp. III), occurring in the deep Atlantic coast of the Iberian Peninsula and the Alboran Sea. We compared phylogeographic patterns of these three Ophiothrix species to test whether closely related species are differentially affected by past demographic events and current oceanographic barriers. We used 432 sequences (137 of O. fragilis, 215 of Ophiothrix sp. II, and 80 of Ophiothrix sp. III) of the 16S rRNA from 23 Atlantic-Mediterranean locations for the analyses. We observed different geographic and bathymetric distributions, and contrasted phylogeography among species. Ophiothrix fragilis appeared genetically isolated between the Atlantic and Mediterranean basins, attributed to past vicariance during Pleistocene glaciations and a secondary contact associated to demographic expansion. This contrasts with the panmixia observed in Ophiothrix sp. II across the Atlantic-Mediterranean area. Results were not conclusive for Ophiothrix sp. III due to the lack of a more complete sampling within the Mediterranean Sea.
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Affiliation(s)
- Sergi Taboada
- Department of Life Sciences, The Natural History Museum of London, Cromwell Road, SW7 5BD, UK
| | - Rocío Pérez-Portela
- Centro de Estudios Avanzados de Blanes, CSIC, Accés a la cala St. Francesc, 14, 17300, Blanes, Spain
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Zigler KS, Byrne M, Raff EC, Lessios HA, Raff RA. Natural hybridization in the sea urchin genus Pseudoboletia between species without apparent barriers to gamete recognition. Evolution 2012; 66:1695-708. [PMID: 22671540 DOI: 10.1111/j.1558-5646.2012.01609.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Marine species with high dispersal potential often have huge ranges and minimal population structure. Combined with the paucity of geographic barriers in the oceans, this pattern raises the question as to how speciation occurs in the sea. Over the past 20 years, evidence has accumulated that marine speciation is often linked to the evolution of gamete recognition proteins. Rapid evolution of gamete recognition proteins in gastropods, bivalves, and sea urchins is correlated with gamete incompatibility and contributes to the maintenance of species boundaries between sympatric congeners. Here, we present a counterexample to this general pattern. The sea urchins Pseudoboletia indiana and P. maculata have broad ranges that overlap in the Indian and Pacific oceans. Cytochrome oxidase I sequences indicated that these species are distinct, and their 7.3% divergence suggests that they diverged at least 2 mya. Despite this, we suspected hybridization between them based on the presence of morphologically intermediate individuals in sympatric populations at Sydney, Australia. We assessed the opportunity for hybridization between the two species and found that (1) individuals of the two species occur within a meter of each other in nature, (2) they have overlapping annual reproductive cycles, and (3) their gametes cross-fertilize readily in the laboratory and in the field. We genotyped individuals with intermediate morphology and confirmed that many were hybrids. Hybrids were fertile, and some female hybrids had egg sizes intermediate between the two parental species. Consistent with their high level of gamete compatibility, there is minimal divergence between P. indiana and P. maculata in the gamete recognition protein bindin, with a single fixed amino acid difference between the two species. Pseudoboletia thus provides a well-characterized exception to the idea that broadcast spawning marine species living in sympatry develop and maintain species boundaries through the divergence of gamete recognition proteins and the associated evolution of gamete incompatibility.
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Affiliation(s)
- Kirk S Zigler
- Department of Biology, Sewanee, The University of the South, Sewanee, Tennessee 37383, USA.
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Gagnaire PA, Minegishi Y, Zenboudji S, Valade P, Aoyama J, Berrebi P. WITHIN-POPULATION STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA. Evolution 2011; 65:3413-27. [DOI: 10.1111/j.1558-5646.2011.01404.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Egea E, Mérigot B, Mahé-Bézac C, Féral JP, Chenuil A. Differential reproductive timing in Echinocardium spp.: the first Mediterranean survey allows interoceanic and interspecific comparisons. C R Biol 2011; 334:13-23. [PMID: 21262482 DOI: 10.1016/j.crvi.2010.10.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2010] [Revised: 10/13/2010] [Accepted: 10/20/2010] [Indexed: 10/18/2022]
Abstract
Echinocardium cordatum had long been considered as cosmopolitan, but molecular data revealed it is a complex of cryptic species, with two non-hybridizing species (B1 & B2) in the Mediterranean Sea living in syntopy with Echinocardium mediterraneum. Histological analyses of the gonads from a 17-month sampling period revealed a statistically significant time lag between the Maturity Indices of E. cordatum and E. mediterraneum. The main environmental stimulus may be different for the two nominal species, possibly seawater temperature for E. cordatum and chlorophyll a concentration for E. mediterraneum. Within the E. cordatum complex, spawning timing and synchrony are different according to major geographic areas (Atlantic/Pacific/Mediterranean) and/or the corresponding genetic subdivision [A/P/(B1 & B2)]. In contrast, the effects of temperature on the reproductive cycle seem rather to mirror the genetic lineages than environmental similarities of the different localities. Between the sister species (B1 & B2) no differences could be detected, maybe due to small sample sizes.
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Affiliation(s)
- Emilie Egea
- CNRS UMR 6540 DIMAR, université d'Aix Marseille, centre d'océanologie de Marseille, station marine d'Endoume, chemin de la Batterie des Lions, 13007 Marseille, France.
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