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Nayak PP, Prakash J. Molecular Characterization of the Indigenous Stingless Bees (Tetragonula spp. Complex) Using ISSR Marker from Southern Peninsular India. NEOTROPICAL ENTOMOLOGY 2018; 47:106-117. [PMID: 28725990 DOI: 10.1007/s13744-017-0538-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2016] [Accepted: 06/19/2017] [Indexed: 06/07/2023]
Abstract
India is a country bestowed enormously with stingless bees, but genetic information about them is extremely minimal. This study focused to tap the geographic allocation, genetic variability, and differentiation among Tetragonula species complexes from natural and semi-urban habitats. Genetic analyses were assessed among 36 contrasting genotypes utilizing 20 ISSR primers. The dual combination exquisitely and productively amplified 245 DNA fragments at the loci, of which 240 bands were polymorphic (97.95%). Low to moderate level of genetic differentiation was detected from different estimators (Ht 0.29, G' STest 0.16, D est 0.072, F ST 0.14, and Nm 2.68). Hierarchical clustering analysis aided to partition the individual genotypes into its respective five species group formed, aided by substantial bootstrap support values, but differing under morphological identification. It also provided valuable insight into the moderate eco-genetic diversity (H 0.39) prevailing from geographically scattered inhabitants. Potential exploitation of hyper-variable ISSR marker turned out fairly as a promising technique for finding valid polymorphisms and infers relevant variations. This baseline information enhances our understanding of the genetic status of the indigenous species from the country.
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Affiliation(s)
- P P Nayak
- Centre for Applied Genetics, Dept of Zoology, Jnanabharathi Campus, Bangalore Univ, Bangalore, India.
- Centre for Environmental Information System, Environmental Management & Policy Research Institute, "Hasiru Bhavana", Doresanipalya Forest Campus, Vinayakanagara Circle, J.P. Nagar 5th Phase, Bangalore, Karnataka, 560 078, India.
| | - J Prakash
- Centre for Applied Genetics, Dept of Zoology, Jnanabharathi Campus, Bangalore Univ, Bangalore, India
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Miranda EA, Ferreira KM, Carvalho AT, Martins CF, Fernandes CR, Del Lama MA. Pleistocene climate changes shaped the population structure of Partamona seridoensis (Apidae, Meliponini), an endemic stingless bee from the Neotropical dry forest. PLoS One 2017; 12:e0175725. [PMID: 28410408 PMCID: PMC5391937 DOI: 10.1371/journal.pone.0175725] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Accepted: 03/30/2017] [Indexed: 11/28/2022] Open
Abstract
Partamona seridoensis is an endemic stingless bee from the Caatinga, a Neotropical dry forest in northeastern Brazil. Like other stingless bees, this species plays an important ecological role as a pollinator. The aim of the present study was to investigate the genetic structure and evolutionary history of P. seridoensis across its current geographic range. Workers from 84 nests from 17 localities were analyzed for COI and Cytb genic regions. The population structure tests (Bayesian phylogenetic inference, AMOVA and haplotype network) consistently characterized two haplogroups (northwestern and eastern), with little gene flow between them, generating a high differentiation between them as well as among the populations within each haplogroup. The Mantel test revealed no isolation by distance. No evidence of a potential geographic barrier in the present that could explain the diversification between the P. seridoensis haplogroups was found. However, Pleistocene climatic changes may explain this differentiation, since the initial time for the P. seridoensis lineages diversification took place during the mid-Pleistocene, specifically the interglacial period, when the biota is presumed to have been more associated with dry conditions and had more restricted, fragmented geographical distribution. This event may have driven diversification by isolating the two haplogroups. Otherwise, the climatic changes in the late Pleistocene must not have drastically affected the population dynamics of P. seridoensis, since the Bayesian Skyline Plot did not reveal any substantial fluctuation in effective population size in either haplogroup. Considering its importance and the fact that it is an endemic bee from a very threatened Neotropical dry forest, the results herein could be useful to the development of conservation strategies for P. seridoensis.
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Affiliation(s)
- Elder Assis Miranda
- Laboratório de Genética Evolutiva de Himenópteros, Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, Brazil
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus, BA, Brazil
| | - Kátia Maria Ferreira
- Laboratório de Genética Evolutiva de Himenópteros, Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, Brazil
| | - Airton Torres Carvalho
- Unidade Acadêmica de Serra Talhada, Universidade Federal Rural de Pernambuco, Serra Talhada, PE, Brazil
| | - Celso Feitosa Martins
- Departamento de Sistemática e Ecologia, Universidade Federal da Paraíba, João Pessoa, PB, Brazil
| | | | - Marco Antonio Del Lama
- Laboratório de Genética Evolutiva de Himenópteros, Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, Brazil
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Frantine-Silva W, Giangarelli DC, Penha RES, Suzuki KM, Dec E, Gaglianone MC, Alves-dos-Santos I, Sofia SH. Phylogeography and historical demography of the orchid bee Euglossa iopoecila: signs of vicariant events associated to Quaternary climatic changes. CONSERV GENET 2016. [DOI: 10.1007/s10592-016-0905-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Miranda EA, Batalha-Filho H, Congrains C, Carvalho AF, Ferreira KM, Del Lama MA. Phylogeography of Partamona rustica (Hymenoptera, Apidae), an Endemic Stingless Bee from the Neotropical Dry Forest Diagonal. PLoS One 2016; 11:e0164441. [PMID: 27723778 PMCID: PMC5056711 DOI: 10.1371/journal.pone.0164441] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Accepted: 09/26/2016] [Indexed: 11/19/2022] Open
Abstract
The South America encompasses the highest levels of biodiversity found anywhere in the world and its rich biota is distributed among many different biogeographical regions. However, many regions of South America are still poorly studied, including its xeric environments, such as the threatened Caatinga and Cerrado phytogeographical domains. In particular, the effects of Quaternary climatic events on the demography of endemic species from xeric habitats are poorly understood. The present study uses an integrative approach to reconstruct the evolutionary history of Partamona rustica, an endemic stingless bee from dry forest diagonal in Brazil, in a spatial-temporal framework. In this sense, we sequenced four mitochondrial genes and genotyped eight microsatellite loci. Our results identified two population groups: one to the west and the other to the east of the São Francisco River Valley (SFRV). These groups split in the late Pleistocene, and the Approximate Bayesian Computation approach and phylogenetic reconstruction indicated that P. rustica originated in the west of the SFRV, subsequently colonising eastern region. Our tests of migration detected reduced gene flow between these groups. Finally, our results also indicated that the inferences both from the genetic data analyses and from the spatial distribution modelling are compatible with historical demographic stability.
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Affiliation(s)
- Elder Assis Miranda
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus, Bahia, Brazil
- * E-mail:
| | - Henrique Batalha-Filho
- Departamento de Zoologia, Instituto de Biologia, Universidade Federal da Bahia, Salvador, Bahia, Brazil
| | - Carlos Congrains
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil
| | - Antônio Freire Carvalho
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus, Bahia, Brazil
| | - Kátia Maria Ferreira
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil
| | - Marco Antonio Del Lama
- Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil
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Rosa JF, Ramalho M, Arias MC. Functional connectivity and genetic diversity ofEulaema atleticana(Apidae, Euglossina) in the Brazilian Atlantic Forest Corridor: assessment of gene flow. Biotropica 2016. [DOI: 10.1111/btp.12321] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Jaqueline Figuerêdo Rosa
- Instituto Federal de Educação; Ciência e Tecnologia Baiano; Campus Guanambi. Distrito de Ceraíma; Caixa Postal 9 46430000 Guanambi Bahia Brazil
| | - Mauro Ramalho
- Laboratório de Ecologia da Polinização (ECOPOL); Instituto de Biologia; Universidade Federal da Bahia; Rua Barão de Jeremoabo, s/n, Ondina 40170115 Salvador Bahia Brazil
| | - Maria Cristina Arias
- Laboratório de Genetica e Evolução de Abelhas; Departamento de Genética e Biologia Evolutiva; Instituto de Biociências; Universidade de São Paulo; Rua do Matão, 277, sala 320, Cidade Universitária 05508090 São Paulo Brazil
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Joly CA, Metzger JP, Tabarelli M. Experiences from the Brazilian Atlantic Forest: ecological findings and conservation initiatives. THE NEW PHYTOLOGIST 2014; 204:459-473. [PMID: 25209030 DOI: 10.1111/nph.12989] [Citation(s) in RCA: 140] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Accepted: 07/03/2014] [Indexed: 06/03/2023]
Abstract
The Brazilian Atlantic Forest hosts one of the world's most diverse and threatened tropical forest biota. In many ways, its history of degradation describes the fate experienced by tropical forests around the world. After five centuries of human expansion, most Atlantic Forest landscapes are archipelagos of small forest fragments surrounded by open-habitat matrices. This 'natural laboratory' has contributed to a better understanding of the evolutionary history and ecology of tropical forests and to determining the extent to which this irreplaceable biota is susceptible to major human disturbances. We share some of the major findings with respect to the responses of tropical forests to human disturbances across multiple biological levels and spatial scales and discuss some of the conservation initiatives adopted in the past decade. First, we provide a short description of the Atlantic Forest biota and its historical degradation. Secondly, we offer conceptual models describing major shifts experienced by tree assemblages at local scales and discuss landscape ecological processes that can help to maintain this biota at larger scales. We also examine potential plant responses to climate change. Finally, we propose a research agenda to improve the conservation value of human-modified landscapes and safeguard the biological heritage of tropical forests.
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Affiliation(s)
- Carlos A Joly
- Department of Plant Biology, Biology Institute, State University of Campinas/UNICAMP, PO Box 6109, 13083-970, Campinas, SP, Brazil
| | - Jean Paul Metzger
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, 321, Travessa 14, 05508-900, São Paulo, SP, Brazil
| | - Marcelo Tabarelli
- Departamento de Botânica, Universidade Federal de Pernambuco, 50670-901, Recife, PE, Brazil
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Xue H, Zhong M, Xu J, Xu L. Geographic distance affects dispersal of the patchy distributed greater long-tailed hamster (Tscherskia triton). PLoS One 2014; 9:e99540. [PMID: 24911266 PMCID: PMC4049827 DOI: 10.1371/journal.pone.0099540] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2014] [Accepted: 05/16/2014] [Indexed: 11/30/2022] Open
Abstract
Dispersal is a fundamental process in ecology influencing the genetic structure and the viability of populations. Understanding how variable factors influence the dispersal of the population is becoming an important question in animal ecology. To date, geographic distance and geographic barriers are often considered as main factors impacting dispersal, but their effects are variable depending on different conditions. In general, geographic barriers affect more significantly than geographic distance on dispersal. In rapidly expanding populations, however, geographic barriers have less effect on dispersal than geographic distance. The effects of both geographic distance and geographic barriers in low-density populations with patchy distributions are poorly understood. By using a panel of 10 microsatellite loci we investigated the genetic structure of three patchy-distributed populations of the Greater long-tailed hamster (Tscherskia triton) from Raoyang, Guan and Shunyi counties of the North China Plain. The results showed that (i) high genetic diversity and differentiation exist in three geographic populations with patchy distributions; (ii) gene flow occurs among these three populations with physical barriers of Beijing city and Hutuo River, which potentially restricted the dispersal of the animal; (iii) the gene flow is negatively correlated with the geographic distance, while the genetic distance shows the positive correlation. Our results suggest that the effect of the physical barriers is conditional-dependent, including barrier capacity or individual potentially dispersal ability. Geographic distance also acts as an important factor affecting dispersal for the patchy distributed geographic populations. So, gene flow is effective, even at relatively long distances, in balancing the effect of geographic barrier in this study.
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Affiliation(s)
- Huiliang Xue
- College of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Min Zhong
- Department of Biological Sciences, Auburn University, Auburn, Alabama, United States of America
| | - Jinhui Xu
- College of Life Sciences, Qufu Normal University, Qufu, Shandong, China
| | - Laixiang Xu
- College of Life Sciences, Qufu Normal University, Qufu, Shandong, China
- * E-mail:
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Boff S, Soro A, Paxton RJ, Alves-dos-Santos I. Island isolation reduces genetic diversity and connectivity but does not significantly elevate diploid male production in a neotropical orchid bee. CONSERV GENET 2014. [DOI: 10.1007/s10592-014-0605-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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da Rocha-Filho LC, Garofalo CA. Community ecology of euglossine bees in the coastal Atlantic forest of São Paulo state, Brazil. JOURNAL OF INSECT SCIENCE (ONLINE) 2013; 13:23. [PMID: 23901873 PMCID: PMC3738101 DOI: 10.1673/031.013.2301] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2011] [Accepted: 03/12/2012] [Indexed: 06/02/2023]
Abstract
The Atlantic Forest stretches along Brazil's Atlantic coast, from Rio Grande do Norte State in the north to Rio Grande do Sul State in the south, and inland as far as Paraguay and the Misiones Province of Argentina. This biome is one of the eight biodiversity hotspots in the world and is characterized by high species diversity. Euglossini bees are known as important pollinators in this biome, where their diversity is high. Due to the high impact of human activities in the Atlantic Forest, in the present study the community structure of Euglossini was assessed in a coastal lowland area, Parque Estadual da Serra do Mar--Núcleo Picinguaba (PESM), and in an island, Parque Estadual da Ilha Anchieta (PEIA), Ubatuba, São Paulo State, Brazil. Sampling was carried out monthly, from August 2007 to July 2009, using artificial baits with 14 aromatic compounds to attract males. Twenty-three species were recorded. On PEIA, Euglossa cordata (L.) (Hymenoptera: Apidae) represented almost two thirds of the total species collected (63.2%). Euglossa iopoecila (23.0%) was the most abundant species in PESM but was not recorded on the island, and Euglossa sapphirina (21.0%) was the second most frequent species in PESM but was represented by only nine individuals on PEIA. The results suggest that these two species may act as bioindicators of preserved environments, as suggested for other Euglossini species. Some authors showed that Eg. cordata is favored by disturbed environments, which could explain its high abundance on Anchieta Island. Similarly, as emphasized by other authors, the dominance of Eg. cordata on the island would be another factor indicative of environmental disturbance.
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Affiliation(s)
- Léo Correia da Rocha-Filho
- Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto-FFCLRP, Universidade de São Paulo-USP, Av. Bandeirantes 3900, CEP 14040-901, Ribeirão Preto, SP, Brazil
| | - Carlos Alberto Garofalo
- Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto-FFCLRP, Universidade de São Paulo-USP, Av. Bandeirantes 3900, CEP 14040-901, Ribeirão Preto, SP, Brazil
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