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Demirtaş S, Budak M, Korkmaz EM, Searle JB, Bilton DT, Gündüz İ. The complete mitochondrial genome of Talpa martinorum (Mammalia: Talpidae), a mole species endemic to Thrace: genome content and phylogenetic considerations. Genetica 2022; 150:317-325. [PMID: 36029420 DOI: 10.1007/s10709-022-00162-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 08/04/2022] [Indexed: 11/04/2022]
Abstract
The complete mitogenome sequence of Talpa martinorum, a recently described Balkan endemic mole, was assembled from next generation sequence data. The mitogenome is similar to that of the three other Talpa species sequenced to date, being 16,835 bp in length, and containing 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, an origin of L-strand replication, and a control region or D-loop. Compared to other Talpa mitogenomes sequenced to date, that of T. martinorum differs in the length of D-loop and stop codon usage. TAG and T-- are the stop codons for the ND1 and ATP8 genes, respectively, in T. martinorum, whilst TAA acts as a stop codon for both ND1 and ATP8 in the other three Talpa species sequenced. Phylogeny reconstructions based on Maximum Likelihood and Bayesian inference analyses yielded phylogenies with similar topologies, demonstrating that T. martinorum nests within the western lineage of the genus, being closely related to T. aquitania and T. occidentalis.
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Affiliation(s)
- Sadık Demirtaş
- Department of Biology, Faculty of Arts and Sciences, Ondokuz Mayis University, Samsun, Turkey
| | - Mahir Budak
- Department of Molecular Biology and Genetics, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Ertan M Korkmaz
- Department of Molecular Biology and Genetics, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Jeremy B Searle
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14853-2701, USA
| | - David T Bilton
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, Devon, PL4 8AA, UK.,Department of Zoology, University of Johannesburg, Auckland Park, PO Box 524, Johannesburg, 2006, South Africa
| | - İslam Gündüz
- Department of Biology, Faculty of Arts and Sciences, Ondokuz Mayis University, Samsun, Turkey.
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The Complete Mitochondrial Genome of a Neglected Breed, the Peruvian Creole Cattle (Bos taurus), and Its Phylogenetic Analysis. DATA 2022. [DOI: 10.3390/data7060076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022] Open
Abstract
Cattle spread throughout the American continent during the colonization years, originating creole breeds that adapted to a wide range of climate conditions. The population of creole cattle in Peru is decreasing mainly due to the introduction of more productive breeds in recent years. During the last 15 years, there has been significant progress in cattle genomics. However, little is known about the genetics of the Peruvian creole cattle (PCC) despite its importance to (i) improving productivity in the Andean region, (ii) agricultural labor, and (iii) cultural traditions. In addition, the origin and phylogenetic relationship of the PCC are still unclear. In order to promote the conservation of the PCC, we sequenced the mitochondrial genome of a creole bull, which also possessed exceptional fighting skills and was employed for agricultural tasks, from the highlands of Arequipa for the first time. The total mitochondrial genome sequence is 16,339 bp in length with the base composition of 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contains 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (leucine), AUA (isoleucine), AUU (isoleucine), AUC (isoleucine), and ACA (threonine). Maximum likelihood reconstruction using complete mitochondrial genome sequences showed that the PCC is related to native African breeds. The annotated mitochondrial genome of PCC will serve as an important genetic data set for further breeding work and conservation strategies.
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Chen L, Xu D, Sun M. The complete mitochondrial genome of short-faced mole ( Scaptochirus moschatus, Talpidae). Mitochondrial DNA B Resour 2022; 7:79-80. [PMID: 34993317 PMCID: PMC8725953 DOI: 10.1080/23802359.2021.2008833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
The short-faced mole (Scaptochirus moschatus) is a unique Chinese mammal that lives in burrows for life. In this study, we used Illumina NovaSeq sequencing to obtain the complete mitochondrial genome of the short-faced mole. The total length of the genome is 16,699 bp, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), 2 ribosomal RNA genes (rRNA), and 1 control region, with a base composition of 33.82% A, 26.89% T, 25.27% C, and 14.01% G. Phylogenetic analysis of the Talpidae by using complete mitochondrial genome sequences of 14 Talpidae species shows that short-faced mole is closely related to Parascaptor leucura.
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Affiliation(s)
- Lei Chen
- College of Life Science, Qufu Normal University, Qufu, China
| | - Di Xu
- College of Life Science, Qufu Normal University, Qufu, China
| | - Mengyao Sun
- College of Life Science, Qufu Normal University, Qufu, China
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Zhu L, Qing-Qing W, Xue-Ting J, Wen-Jing J, Xin-Xu Z, Qian-Qian Y, Jun-Sheng Z, Zhong-Wan P. Sequencing and analysis of the complete mitochondrial genome of the lesser bandicoot rat ( Bandicota bengalensis) from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2021; 6:2063-2065. [PMID: 34212099 PMCID: PMC8218843 DOI: 10.1080/23802359.2021.1942273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Accepted: 06/07/2021] [Indexed: 11/13/2022] Open
Abstract
The complete mitogenome sequence of the lesser bandicoot rat (Bandicota bengalensis Gray and Hardwicke, 1833) was determined using long PCR. The genome was 16,327 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (34.2%), C (24.9%), T (28.5%) and G (12.4%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Bandicota bengalensis in Muridae at the molecular level. The mitochondrial genome would be a significant supplement for the Bandicota bengalensis genetic background. The two Bandicota species formed a monophyletic group with the high bootstrap value (100%) in all examinations.
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Affiliation(s)
- Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Qing-Qing
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Jiang Xue-Ting
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Jiang Wen-Jing
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhao Xin-Xu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Yao Qian-Qian
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhang Jun-Sheng
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Piao Zhong-Wan
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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Zhao XX, Piao ZW, Yang QJ, Zhang Q, Yao QQ, Zhang JS, Liu Z. Sequencing and analysis of the complete mitochondrial genome of Ochotona hyperborea from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2021; 6:1805-1807. [PMID: 34124354 PMCID: PMC8174475 DOI: 10.1080/23802359.2021.1934137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 05/15/2021] [Indexed: 12/05/2022] Open
Abstract
The complete mitogenome sequence of Ochotona hyperborea was determined using long PCR. The genome was 17,063 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (31.1%), C (28.7%), T (26.3%), and G (13.9%). The base compositions present clearly the A-T skew, which is most obvious in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Ochotona hyperborea in Ochotonidae at the molecular level. The mitochondrial genome would be a significant supplement for the Ochotona hyperborea genetic background. The eight Ochotona species formed a monophyletic group with the high bootstrap value (100%) in all examinations.
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Affiliation(s)
- Xin-Xu Zhao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Zhong-Wan Piao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Qiao-Jiang Yang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Qi Zhang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Qian-Qian Yao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Jun-Sheng Zhang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
| | - Zhu Liu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, PR China
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Cai H, Wang QQ, Zhao XX, Yao QQ, Wu N, Zhang JS, Liu Z. Sequencing and analysis of the complete mitochondrial genome of Micromys erythrotis from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2021; 6:1617-1620. [PMID: 34027072 PMCID: PMC8118456 DOI: 10.1080/23802359.2021.1926353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Accepted: 05/02/2021] [Indexed: 11/04/2022] Open
Abstract
The complete mitogenome sequence of Micromys erythrotis was determined using long PCR. The genome was 16,238 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.7%), C (24.8%), T (29.1%) and G (12.4%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Micromys erythrotis in Muridae at the molecular level. The mitochondrial genome would be a significant supplement for the Micromys erythrotis genetic background.
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Affiliation(s)
- He Cai
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Qing-Qing Wang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Xin-Xu Zhao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Qian-Qian Yao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Ning Wu
- Ningan Jiangnan School, Ningan, P.R. China
| | - Jun-Sheng Zhang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhu Liu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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Lamelas L, Aleix-Mata G, Rovatsos M, Marchal JA, Palomeque T, Lorite P, Sánchez A. Complete Mitochondrial Genome of Three Species of the Genus Microtus (Arvicolinae, Rodentia). Animals (Basel) 2020; 10:E2130. [PMID: 33207831 PMCID: PMC7696944 DOI: 10.3390/ani10112130] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 11/09/2020] [Accepted: 11/14/2020] [Indexed: 11/17/2022] Open
Abstract
The 65 species of the genus Microtus have unusual sex-related genetic features and a high rate of karyotype variation. However, only nine complete mitogenomes for these species are currently available. We describe the complete mitogenome sequences of three Microtus, which vary in length from 16,295 bp to 16,331 bp, contain 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes and a control region. The length of the 13 PCGs and the coded proteins is the same in all three species, and the start and stop codons are conserved. The non-coding regions include the L-strand origin of replication, with the same sequence of 35 bp, and the control region, which varies between 896 bp and 930 bp in length. The control region includes three domains (Domains I, II and III) with extended termination-associated sequences (ETAS-1 and ETAS-2) in Domain I. Domain II and Domain III include five (CSB-B, C, D, E and F) and three (CSB-1, CSB-2, and CSB-3) conserved sequence blocks, respectively. Phylogenetic reconstructions using the mitochondrial genomes of all the available Microtus species and one representative species from another genus of the Arvicolinae subfamily reproduced the established phylogenetic relationships for all the Arvicolinae genera that were analyzed.
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Affiliation(s)
- Luz Lamelas
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
| | - Gaël Aleix-Mata
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
| | - Michail Rovatsos
- Department of Ecology, Faculty of Science, Charles University, 12844 Prague, Czech Republic;
| | - Juan Alberto Marchal
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
| | - Teresa Palomeque
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
| | - Pedro Lorite
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
| | - Antonio Sánchez
- Departamento de Biología Experimental, Área de Genética, Universidad de Jaén, Paraje de las Lagunillas s/n, 23071 Jaén, Spain; (L.L.); (G.A.-M.); (J.A.M.); (T.P.); (P.L.)
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Jun-Sheng Z, Bo-Qi L, Qiao-Jiang Y, Qi Z, Chen W, Zhu L. Sequencing and analysis of the complete mitochondrial genome of Ochotona coreana from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1731353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Zhang Jun-Sheng
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Li Bo-Qi
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Yang Qiao-Jiang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhang Qi
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Chen
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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The complete mitochondrial genome of Talpa aquitania (Talpidae; Insectivora), a mole species endemic to northern Spain and southern France. Mol Biol Rep 2020; 47:2397-2403. [PMID: 32034626 DOI: 10.1007/s11033-020-05296-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 01/08/2020] [Accepted: 01/30/2020] [Indexed: 10/25/2022]
Abstract
The complete mitogenome sequence of Talpa aquitania, a recently described Talpa species, was assembled using whole-genome sequencing data. It varies in length from 16,776 to 16,846 bp, contains 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L-strand replication, and a control region. In the control region, which varied from 1320 to 1390 bp, we identified the extended termination-associated sequence (ETAS-1 and ETAS-2) and the conserved sequence blocks (CSB-1, 2, 3, B, C, D, E, F). In addition, this region includes a 10 bp tandem repeat DNA sequence, with a variable number of repeats that suggest the existence of heteroplasmy. Phylogeny reconstructions based on Maximum Likelihood, Neighbor-joining and Bayesian inference analyses yielded phylogenies with similar topologies demonstrating that T. aquitania and T. occidentalis are sister species.
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Zhu L, Qiao-Jiang Y, Chun-Yu X, Chen W, Qing-Qing W, Wen-Jing J. Sequencing and analysis of the complete mitochondrial genome of Blarinella griselda from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2020; 5:965-967. [PMID: 33366829 PMCID: PMC7748876 DOI: 10.1080/23802359.2020.1715305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 01/07/2020] [Indexed: 11/05/2022] Open
Abstract
The complete mitogenome sequence of Blarinella griselda was determined using long PCR. The genome was 16,947 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (33.1%), C (22.6%), T (31.6%) and G (12.7%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Blarinella griselda in Soricidae at the molecular level. The mitochondrial genome would be a significant supplement for the Blarinella griselda genetic background. The three Blarinella species formed a monophyletic group with the high bootstrap value (100%) in all examinations.
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Affiliation(s)
- Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Yang Qiao-Jiang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Xu Chun-Yu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Chen
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Qing-Qing
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Jiang Wen-Jing
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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Zhi-Min J, Ke-Song Q, Bo-Qi L, Jun-Sheng Z, He C, Jin-Xun L, Zhu W, Zhu L. Sequencing and analysis of the complete mitochondrial genome of Crocidura tanakae from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2019; 4:2791-2793. [PMID: 33365730 PMCID: PMC7706458 DOI: 10.1080/23802359.2019.1659118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Accepted: 07/31/2019] [Indexed: 11/05/2022] Open
Abstract
The complete mitogenome sequence of Crocidura tanakae was determined using long PCR. The genome was 16,969 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (32.5%), C (22.3%), T (31.9%), and G (13.3%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The five Crocidura species formed a monophyletic group with the high bootstrap value (100%) in all examinations. This study verifies the evolutionary status of C. tanakae in Soricidae at the molecular level. The mitochondrial genome would be a significant supplement for the C. tanakae genetic background.
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Affiliation(s)
- Jin Zhi-Min
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Qin Ke-Song
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Li Bo-Qi
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Zhang Jun-Sheng
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Cai He
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Li Jin-Xun
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Wang Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
| | - Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, People’s Republic of China
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Zhu L, Yang B, Yi S, Qi Z, He C, Sheng Z, Jin-Xun L, Zhu W. Sequencing and analysis of the complete mitochondrial genome of Chodsigoa hoffmanni from China and its phylogenetic analysis. Mitochondrial DNA B Resour 2019; 4:2438-2440. [PMID: 33365576 PMCID: PMC7687604 DOI: 10.1080/23802359.2019.1637294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Accepted: 06/22/2019] [Indexed: 11/22/2022] Open
Abstract
The complete mitogenome sequence of Chodsigoa hoffmanni was determined using long PCR. The genome was 17,138 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (32.8%), C (24.4%), T (29.8%), and G (13.0%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. Chodsigoa hoffmanni is the first species to have been reported on the mitochondrial genome in Chodsigoa genus. This study verifies the evolutionary status of C. hoffmanni in Soricidae at the molecular level. The mitochondrial genome would be a significant supplement for the C. hoffmanni genetic background.
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Affiliation(s)
- Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Bai Yang
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Sheng Yi
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhang Qi
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Cai He
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Zhang Sheng
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Li Jin-Xun
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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Zhu L, Ao-nan W, Jiao-Jiao L. Sequencing and analysis of the complete mitochondrial genome of the large mole (Mogera robusta) from China. MITOCHONDRIAL DNA PART B 2019. [DOI: 10.1080/23802359.2019.1601520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Liu Zhu
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Wang Ao-nan
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
| | - Li Jiao-Jiao
- College of Life Science and Technology, Mudanjiang Normal University, Mudanjiang, P.R. China
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