Conformational landscape of platinum(II)-tetraamine complexes: DFT and NBO studies

Binding Motifs of Carboplatin and Oxaliplatin with Guanine: A Combined MS/MS, IRMPD, and Theoretical Study

Complexes generated in the gas phase involving the purine nucleobase guanine bound to second and third generation platinum drugs, namely, carboplatin (CarboPt) and oxaliplatin (OxaliPt), were investigated by combining tandem mass spectrometry, collision-induced dissociation (CID), infrared multiple photon dissociation spectroscopy (IRMPD), and density functional theory (DFT) calculations. As the first step, a spectroscopic characterization of the protonated platinum drugs was accomplished. Protonation of both CarboPt and OxaliPt in the gas phase occurs on one of the two carbonyl groups of the cyclobutanedicarboxylate and oxalate ligand, respectively. Such protonation has been postulated by several theoretical studies as a key preliminary step in the hydrolysis of Pt drugs under acidic conditions. Subsequently, the protonated drugs react with guanine in solution to generate a complex of general formula [Pt drug + H + guanine]+, which was then mass-selected. CID experiments provided evidence of the presence of strong binding between guanine and platinum-based drugs within the complexes. The structures of the two complexes have also been examined by comparing the experimental IRMPD spectra recorded in two spectral regions with DFT-computed IR spectra. For each system, the IRMPD spectra agree with the vibrational spectra calculated for the global minimum structures, which present a monodentate complexation of Pt at the N7 position of canonical guanine. This binding scheme is therefore akin to that observed for cisplatin, while other coordination sites yield substantially less stable species. Interestingly, in the case of oxaliplatin, the IRMPD spectra are consistent with the presence of two isomeric forms very close in energy.

3,5-Anthryl-Bodipy dyad/triad: Preparation, effect of F-B-F induced conformation restriction on the photophysical properties, and application in triplet-triplet-annihilation upconversion

We prepared a series of compact Bodipy-anthryl electron donor/acceptor triads and dyads by attaching anthryl moieties at the 3-,5-positions of the Bodipy core, with a novel conformation restriction approach, to study the spin-orbit charge transfer intersystem crossing (SOCT-ISC). The conformation restrictions are imposed by the BF₂ unit of Bodipy without invoking the previously reported method with 1,7-dimethyl or 1,3-dimethyl groups. Our new approach shows a few advantages, including the stronger electron accepting ability of the methyl-free Bodipy core (reduction potential anodically shifted by +0.3 V vs the methylated Bodipy), red-shifted absorption (by 21 nm), and longer triplet state lifetime (372 µs vs 126 µs). The effects of the different mutual orientations of the electron donor and acceptor on ultraviolet-visible absorption, fluorescence, triplet state quantum yields, and lifetimes were studied. Triads with orthogonal geometries show higher singlet oxygen quantum yields (Φ_Δ = 37%) than those with more coplanar geometries. Since the non-radiative decay for the S₁ state is significant in the parent Bodipy chromophore (Φ_F = 6.0%), we propose that in dyads/triads, the charge separation and recombination-induced ISC outcompete the non-radiative decay to the ground state, which is new in the study of SOCT-ISC. Density functional theory computation indicated a shallow torsion potential energy curve as compared to the meso-anthryl-Bodipy dyad analog, which may contribute a low triplet state quantum yield of the new dyads/triads. Triplet-triplet annihilation upconversion was performed with the electron donor/acceptor dyads as the triplet photosensitizer, with an upconversion quantum yield of 12.3%.

Mass Spectrometric and Computational Investigation of the Protonated Carnosine-Carboplatin Complex Fragmentation

Platinum(II)-based anticancer drugs are square-planar d(8) complexes that, activated by hydrolysis, cause cancer cell death by binding to nuclear DNA and distorting its structure. For that reason, interactions of platinum anticancer drugs with DNA have been extensively investigated, aiming at disentangling the mechanism of action and toxicity. Less attention, however, has been devoted to the formation of adducts between platinum drugs with biological ligands other than DNA. These adducts can cause the loss and deactivation of the drug before it arrives at the ultimate target and are also thought to contribute to the drug's toxicity. Here are reported the outcomes of electrospray ionization mass spectrometry experiments and density functional theory (DFT) computations carried out to investigate the fragmentation pathways of the protonated carnosine-carboplatin complex, [Carnosine + CarbPt + H](+). DFT calculations at the B3LYP/LANL2DZ level employed to probe fragmentation mechanisms account for all experimental data. Because of the relative rigidity of the structure of the most stable 1A conformer, stabilized by three strong hydrogen bonds, the first step of all of the examined fragmentation pathways is the interconversion of the 1A conformer into the less stable structure 1B. Formation of the [Carnosine + H](+) fragment from the precursor ion, [Carnosine + CarbPt + H](+), is calculated to be the lowest-energy process. At slightly higher energies, the loss of two amino groups is observed to produce the [Carnosine + (CarbPt - NH3) + H](+) and [Carnosine + (CarbPt - 2NH3) + H](+) ions. At significantly higher energies, the loss of CO2 occurs, yielding the final [Carnosine + (CarbPt - NH3) - CO2 + H](+) and [Carnosine + (CarbPt - 2NH3) - CO2 + H](+) products. Formation of the [CarbPt + H](+) fragment from [Carnosine + CarbPt + H](+), even if not hampered by a high activation barrier, is calculated to be very unfavorable from a thermodynamic point of view.

Fragmentation pathways analysis for the gas phase dissociation of protonated carnosine-oxaliplatin complexes

Collision-induced dissociation (CID) experiments on the protonated carnosine-oxaliplatin complex were shown to yield nine different fragment ions. Density functional calculations were employed to probe the fragmentation mechanisms that account for all experimental data.

Amplification of enantiomeric excess, mirror-image symmetry breaking and kinetic proofreading in Soai reaction models with different oligomeric orders

A comprehensive kinetic analysis of three prototypical autocatalytic cycle models based on the absolute asymmetric Soai reaction is presented. The three models, which can give rise to amplification of enantiomeric excess and mirror-image symmetry breaking, vary by their monomeric, dimeric or trimeric order of the assumed catalytic species. Our numerical approach considered the entire chiral combinatorics of the diastereomeric interactions in the models as well as the multiplicity of coupled reversible reactions without applying fast equilibration or quasi-steady state approximations. For the simplest monomeric model, an extensive range of parameters was explored employing a random grid parameter scanning method that revealed the influence of the parameter values on the product distribution, the reaction-time, the attenuation or amplification of enantiomeric excess as well as on the presence or absence of mirror-image symmetry breaking. A symmetry breaking test was imposed on the three models showing that an increase in the catalytic oligomer size from one to three leads to a higher tolerance to poorer chiral recognition between the diastereoisomers and identifies the greater impact of the diastereoisomeric energy difference over an imperfect stereoselectivity in the catalytic step. This robustness is understood as a particular case of so-called kinetic proofreading in asymmetric autocatalysis.