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Shomali SR, Rasuli SN, Ahmadabadi MN, Shimazaki H. Uncovering hidden network architecture from spiking activities using an exact statistical input-output relation of neurons. Commun Biol 2023; 6:169. [PMID: 36792689 PMCID: PMC9932086 DOI: 10.1038/s42003-023-04511-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 01/20/2023] [Indexed: 02/17/2023] Open
Abstract
Identifying network architecture from observed neural activities is crucial in neuroscience studies. A key requirement is knowledge of the statistical input-output relation of single neurons in vivo. By utilizing an exact analytical solution of the spike-timing for leaky integrate-and-fire neurons under noisy inputs balanced near the threshold, we construct a framework that links synaptic type, strength, and spiking nonlinearity with the statistics of neuronal population activity. The framework explains structured pairwise and higher-order interactions of neurons receiving common inputs under different architectures. We compared the theoretical predictions with the activity of monkey and mouse V1 neurons and found that excitatory inputs given to pairs explained the observed sparse activity characterized by strong negative triple-wise interactions, thereby ruling out the alternative explanation by shared inhibition. Moreover, we showed that the strong interactions are a signature of excitatory rather than inhibitory inputs whenever the spontaneous rate is low. We present a guide map of neural interactions that help researchers to specify the hidden neuronal motifs underlying observed interactions found in empirical data.
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Affiliation(s)
- Safura Rashid Shomali
- School of Cognitive Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, 19395-5746, Iran.
| | - Seyyed Nader Rasuli
- grid.418744.a0000 0000 8841 7951School of Physics, Institute for Research in Fundamental Sciences (IPM), Tehran, 19395-5531 Iran ,grid.411872.90000 0001 2087 2250Department of Physics, University of Guilan, Rasht, 41335-1914 Iran
| | - Majid Nili Ahmadabadi
- grid.46072.370000 0004 0612 7950Control and Intelligent Processing Center of Excellence, School of Electrical and Computer Engineering, College of Engineering, University of Tehran, Tehran, 14395-515 Iran
| | - Hideaki Shimazaki
- Graduate School of Informatics, Kyoto University, Kyoto, 606-8501, Japan. .,Center for Human Nature, Artificial Intelligence, and Neuroscience (CHAIN), Hokkaido University, Hokkaido, 060-0812, Japan.
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Generation of Sharp Wave-Ripple Events by Disinhibition. J Neurosci 2020; 40:7811-7836. [PMID: 32913107 PMCID: PMC7548694 DOI: 10.1523/jneurosci.2174-19.2020] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Revised: 06/29/2020] [Accepted: 07/17/2020] [Indexed: 11/21/2022] Open
Abstract
Sharp wave-ripple complexes (SWRs) are hippocampal network phenomena involved in memory consolidation. To date, the mechanisms underlying their occurrence remain obscure. Here, we show how the interactions between pyramidal cells, parvalbumin-positive (PV+) basket cells, and an unidentified class of anti-SWR interneurons can contribute to the initiation and termination of SWRs. Using a biophysically constrained model of a network of spiking neurons and a rate-model approximation, we demonstrate that SWRs emerge as a result of the competition between two interneuron populations and the resulting disinhibition of pyramidal cells. Our models explain how the activation of pyramidal cells or PV+ cells can trigger SWRs, as shown in vitro, and suggests that PV+ cell-mediated short-term synaptic depression influences the experimentally reported dynamics of SWR events. Furthermore, we predict that the silencing of anti-SWR interneurons can trigger SWRs. These results broaden our understanding of the microcircuits supporting the generation of memory-related network dynamics. SIGNIFICANCE STATEMENT The hippocampus is a part of the mammalian brain that is crucial for episodic memories. During periods of sleep and inactive waking, the extracellular activity of the hippocampus is dominated by sharp wave-ripple events (SWRs), which have been shown to be important for memory consolidation. The mechanisms regulating the emergence of these events are still unclear. We developed a computational model to study the emergence of SWRs and to explain the roles of different cell types in regulating them. The model accounts for several previously unexplained features of SWRs and thus advances the understanding of memory-related dynamics.
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Parto Dezfouli M, Khamechian MB, Treue S, Esghaei M, Daliri MR. Neural Activity Predicts Reaction in Primates Long Before a Behavioral Response. Front Behav Neurosci 2018; 12:207. [PMID: 30271333 PMCID: PMC6146178 DOI: 10.3389/fnbeh.2018.00207] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 08/20/2018] [Indexed: 01/27/2023] Open
Abstract
How neural activity is linked to behavior is a critical question in neural engineering and cognitive neurosciences. It is crucial to predict behavior as early as possible, to plan a machine response in real-time brain computer interactions. However, previous studies have studied the neural readout of behavior only within a short time before the action is performed. This leaves unclear, if the neural activity long before a decision could predict the upcoming behavior. By recording extracellular neural activities from the visual cortex of behaving rhesus monkeys, we show that: (1) both, local field potentials (LFPs) and the rate of neural spikes long before (>2 s) a monkey responds to a change, foretell its behavioral performance in a spatially selective manner; (2) LFPs, the more accessible component of extracellular activity, are a stronger predictor of behavior; and (3) LFP amplitude is positively correlated while spiking activity is negatively correlated with behavioral reaction time (RT). These results suggest that field potentials could be used to predict behavior way before it is performed, an observation that could potentially be useful for brain computer interface applications, and that they contribute to the sensory neural circuit’s speed in information processing.
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Affiliation(s)
- Mohsen Parto Dezfouli
- Neuroscience and Neuroengineering Research Laboratory, Department of Biomedical Engineering, School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Mohammad Bagher Khamechian
- Neuroscience and Neuroengineering Research Laboratory, Department of Biomedical Engineering, School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Stefan Treue
- Cognitive Neuroscience Laboratory, German Primate Center-Leibniz Institute for Primate Research, Goettingen, Germany.,Faculty of Biology and Psychology, University of Goettingen, Goettingen, Germany.,Bernstein Center for Computational Neuroscience, Goettingen, Germany.,Leibniz-Science Campus Primate Cognition, Goettingen, Germany
| | - Moein Esghaei
- Neuroscience and Neuroengineering Research Laboratory, Department of Biomedical Engineering, School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran.,Cognitive Neuroscience Laboratory, German Primate Center-Leibniz Institute for Primate Research, Goettingen, Germany.,Cognitive Neurobiology Laboratory, School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Tehran, Iran
| | - Mohammad Reza Daliri
- Neuroscience and Neuroengineering Research Laboratory, Department of Biomedical Engineering, School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran.,Cognitive Neurobiology Laboratory, School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Tehran, Iran
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