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For: Stratmann D, Guittet E, van Heijenoort C. Robust structure-based resonance assignment for functional protein studies by NMR. J Biomol NMR 2010;46:157-73. [PMID: 20024602 PMCID: PMC2813526 DOI: 10.1007/s10858-009-9390-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2009] [Accepted: 11/04/2009] [Indexed: 05/20/2023]
Number Cited by Other Article(s)
1
Klukowski P, Riek R, Güntert P. Time-optimized protein NMR assignment with an integrative deep learning approach using AlphaFold and chemical shift prediction. SCIENCE ADVANCES 2023;9:eadi9323. [PMID: 37992167 PMCID: PMC10664993 DOI: 10.1126/sciadv.adi9323] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 10/20/2023] [Indexed: 11/24/2023]
2
NMR Structure Determinations of Small Proteins Using only One Fractionally 20% 13C- and Uniformly 100% 15N-Labeled Sample. Molecules 2021;26:molecules26030747. [PMID: 33535444 PMCID: PMC7867066 DOI: 10.3390/molecules26030747] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 01/26/2021] [Accepted: 01/27/2021] [Indexed: 11/17/2022]  Open
3
Monneau YR, Rossi P, Bhaumik A, Huang C, Jiang Y, Saleh T, Xie T, Xing Q, Kalodimos CG. Automatic methyl assignment in large proteins by the MAGIC algorithm. JOURNAL OF BIOMOLECULAR NMR 2017;69:215-227. [PMID: 29098507 PMCID: PMC5764113 DOI: 10.1007/s10858-017-0149-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2017] [Accepted: 10/23/2017] [Indexed: 05/03/2023]
4
Trautwein M, Fredriksson K, Möller HM, Exner TE. Automated assignment of NMR chemical shifts based on a known structure and 4D spectra. JOURNAL OF BIOMOLECULAR NMR 2016;65:217-236. [PMID: 27484442 DOI: 10.1007/s10858-016-0050-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 07/28/2016] [Indexed: 06/06/2023]
5
Xiao Y, Warner LR, Latham MP, Ahn NG, Pardi A. Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2. Biochemistry 2015;54:4307-19. [PMID: 26132046 DOI: 10.1021/acs.biochem.5b00506] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
6
Li DW, Meng D, Brüschweiler R. Reliable resonance assignments of selected residues of proteins with known structure based on empirical NMR chemical shift prediction. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2015;254:93-97. [PMID: 25863893 PMCID: PMC4467894 DOI: 10.1016/j.jmr.2015.02.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2014] [Revised: 02/12/2015] [Accepted: 02/14/2015] [Indexed: 06/04/2023]
7
MacRaild CA, Norton RS. RASP: rapid and robust backbone chemical shift assignments from protein structure. JOURNAL OF BIOMOLECULAR NMR 2014;58:155-63. [PMID: 24445369 DOI: 10.1007/s10858-014-9813-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 01/15/2014] [Indexed: 05/05/2023]
8
Cavuşlar G, Çatay B, Apaydın MS. A tabu search approach for the NMR protein structure-based assignment problem. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2012;9:1621-1628. [PMID: 23221084 DOI: 10.1109/tcbb.2012.122] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
9
Schmidt E, Güntert P. A new algorithm for reliable and general NMR resonance assignment. J Am Chem Soc 2012;134:12817-29. [PMID: 22794163 DOI: 10.1021/ja305091n] [Citation(s) in RCA: 133] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
10
Bahrami A, Clos LJ, Markley JL, Butcher SE, Eghbalnia HR. RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts. JOURNAL OF BIOMOLECULAR NMR 2012;52:289-302. [PMID: 22359049 PMCID: PMC3480180 DOI: 10.1007/s10858-012-9603-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2011] [Accepted: 01/08/2012] [Indexed: 05/13/2023]
11
Jang R, Gao X, Li M. Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from 15N-NOESY. BMC Bioinformatics 2012;13 Suppl 3:S4. [PMID: 22536902 PMCID: PMC3402924 DOI: 10.1186/1471-2105-13-s3-s4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
12
Jang R, Gao X, Li M. Towards fully automated structure-based NMR resonance assignment of ¹⁵N-labeled proteins from automatically picked peaks. J Comput Biol 2011;18:347-63. [PMID: 21385039 DOI: 10.1089/cmb.2010.0251] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
13
Advances in automated NMR protein structure determination. Q Rev Biophys 2011;44:257-309. [PMID: 21411039 DOI: 10.1017/s0033583510000326] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
14
Wang X, Tash B, Flanagan JM, Tian F. RDC derived protein backbone resonance assignment using fragment assembly. JOURNAL OF BIOMOLECULAR NMR 2011;49:85-98. [PMID: 21191805 PMCID: PMC6936109 DOI: 10.1007/s10858-010-9467-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2010] [Accepted: 12/15/2010] [Indexed: 05/23/2023]
15
Crippen GM, Rousaki A, Revington M, Zhang Y, Zuiderweg ERP. SAGA: rapid automatic mainchain NMR assignment for large proteins. JOURNAL OF BIOMOLECULAR NMR 2010;46:281-298. [PMID: 20232231 DOI: 10.1007/s10858-010-9403-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2009] [Accepted: 02/23/2010] [Indexed: 05/26/2023]
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