C-Phycoerythrin as a Colorimetric and Fluorometric Probe for the Sensitive, Selective and Quantitative Detection of Cu2+ in Aqueous Samples

Study of fluorescence spectroscopy and molecular mechanisms for the interaction of Hg2+ ions and R-phycoerythrin from marine algae (Porphyra yezoensis)

Heavy metal is a worldwide hazardous material, and many efforts were made to detect them sensitively and selectively. R-phycoerythrin (R-PE), a marine fluorescent protein, is abundant in red algae and participates in photosynthesis. In this work, the fluorescence spectroscopy and molecular mechanism of Hg2+ ions and R-PE were further explored through fluorescence spectrum measurements, time-resolved fluorescence lifetimes, peak fitting of Fourier transform infrared spectroscopy, and molecular docking simulation in this study. It was proved by fluorescent spectrum measurements that Hg2+ ions could lead to static fluorescence quenching. Besides, the interaction was a spontaneous and exothermic process driven by hydrogen bond and Van der Waals (VDW) force. Importantly, Hg2+ ions bound to 78LYS and 82CYS on the α chain and 73CYS and 82CYS on the β chain, which resulted in the structural changes of the peptide chain and affected the secondary structure contents of R-PE. This study further explained the effect of Hg2+ ions on marine fluorescent protein R-PE.

A naturally fluorescent protein C-phycoerythrin and graphene oxide bio-composite as a selective fluorescence 'turn off/on' probe for DNA quantification and characterization

Highly specific graphene-DNA interactions have been at the forefront of graphene-based sensor design for various analytes, including DNA itself. However, in addition to its detection, DNA also needs to be characterized according to its size and concentration in a sample, which is an additional analytical step. Designing a highly sensitive and selective DNA sensing and characterization platform is, thus, of great interest. The present study demonstrates that a bio-derived, naturally fluorescent protein C-phycoerythrin (CPE) - graphene oxide (GO) bio-composite can be used to detect dsDNA in nanomolar quantities efficiently via fluorescent "turn off/on" mechanism. Interaction with GO temporarily quenches CPE fluorescence in a dose-dependent manner. Analytical characterization indicates an indirect charge transfer with a corresponding loss of crystalline GO structure. The fluorescence is regained with the addition of DNA, while other biomolecules do not pose any hinderance in the detection process. The extent of regain is DNA length dependent, and the corresponding calibration curve successfully quantifies the size of an unknown DNA. The incubation time for detection is ~3-5 min. The bio-composite platform also works successfully in a complex biomolecule matrix and cell lysate. However, the presence of serum albumin poses a hinderance in the serum sample. Particle size analysis proves that CPE displacement from GO surface by the incoming DNA is the reason for the 'turn on' response, and that the sensing process is exclusive to dsDNA. This new platform could be an exciting and rapid DNA sensing and characterization tool.

A natural cyanobacterial protein C-phycoerythrin as an HS- selective optical probe in aqueous systems

A naturally fluorescent cyanobacterial protein C-phycoerythrin (CPE) was investigated as a fluorescent probe for biologically and environmentally important hydrosulphide (HS^-) ion. It was selective for HS amongst a large anion screen and the optical response was rapid. Sequential UV-visible titration showed considerable peak shift and attenuation with increasing [HS^-] while fluorescence titration proved that HS^- quenched CPE fluorescence in a concentration dependent manner. The linear response range was 0-2 mM HS^- while the Stern Volmer curve was non-linear and the limit of detection was 185.12 μM. Except bicarbonate and glycine, no anion or biomolecule interfered with the detection even at 10 times the concentration of HS^-. It was also free of influences from other sulphur forms like sulphite, sulphate and thiosulphate. CPE reliably detected HS^- in freshwater and effluent samples, though some under- and over - estimation was evident. The % recovery ranged from ~96 to 105% (RSD ~ 0.035-0.188%). FTIR analysis showed significant changes in the amide I and II regions of CPE, along with minor modifications in the amide III region as well, showing that HS^- was able to influence the protein secondary structure at higher concentrations.

Paper based field deployable sensor for naked eye monitoring of copper (II) ions; elucidation of binding mechanism by DFT studies

The study demonstrates the fabrication of test strips made from newly synthesized ortho-Vanillin based colorimetric chemosensor (probe P) that could be employed as field deployable tool for rapid and naked eye detection of Cu²⁺. Upon addition of Cu²⁺ to the chemosensor, it exhibits rapid pink color from colorless and can be easily seen through the naked eye. This probe exhibits a remarkable colorimetric "ON" response and the absorbance intensity of the probe enhances significantly in presence of Cu²⁺. The sensing mechanism has been deduced using FTIR, XPS, LCMS and DFT studies. The binding mechanism of the probe to Cu²⁺ was substantiated by DFT studies. HOMO of the probe suggests that a high electronic density resides on O, N atoms and thus these are the favorable binding site for the metal ions. Study revealed that the P + Cu²⁺ complex is -35.64 eV more stable than individual reactants. The Cu²⁺ binds to the probe in 1:1 stoichiometry with a binding constant of 2.6 × 10⁴ M^-1 as calculated by Job's plot and Benesi-Hildebrand plot. The chemosensor shows 1.8 × 10^-8 M detection limit, which is considerably lesser than that of the WHO admissible limit of [Cu²⁺] in drinking water. Possible interfering ions namely Ca²⁺, Mg²⁺, Fe²⁺, Co²⁺, Ni²⁺, Cd²⁺, Hg²⁺, Mn²⁺, Al³⁺ and Cr³⁺ do not show any appreciable interference in the colorimetric response of the probe towards Cu²⁺. Particularly, the colorimetric "ON-OFF-ON" responses are proved to be repeated over 5 times by the sequential inclusion of Cu²⁺ and S^2-. Sensitivity of the probe in real-time water and blood samples is found at par with results with AAS and ICP-OES techniques. Further, the reversibility of the probe and the easy fabrication of deployable strips for real-field naked eye detection of Cu²⁺ suggest importance of synthesized probe.