A Radial Basis Function Neural Network (RBFNN) Approach for Structural Classification of Thyroid Diseases

Comparison of machine learning algorithms and multiple linear regression for live weight estimation of Akkaraman lambs

This study was designed to predict the post-weaning weights of Akkaraman lambs reared on different farms using multiple linear regression and machine learning algorithms. The effect of factors the age of the dam, gender, type of lambing, enterprise, type of flock, birth weight, and weaning weight was analyzed. The data was collected from a total of 25,316 Akkaraman lambs raised at multiple farms in the Çiftlik District of Niğde province. Comparative analysis was conducted by using multiple linear regression, Random Forest, Support Vector Machines (and Support Vector Regression), Extreme Gradient Boosting (XGBoost) (and Gradient Boosting), Bayesian Regularized Neural Network, Radial Basis Function Neural Network, Classification and Regression Trees, Exhaustive Chi-squared Automatic Interaction Detection (and Chi-squared Automatic Interaction Detection), and Multivariate Adaptive Regression Splines algorithms. In this study, the test dataset was divided into five layers using the K-fold cross-validation method. The performance of models was compared using performance criteria such as Adjusted R-squared (Adj-[Formula: see text]), Root Mean Square Error (RMSE), Mean Absolute Deviation (MAD), and Mean Absolute Percentage Error (MAPE) by utilizing test populations in the predicted models. Additionally, the presence of low standard deviations for these criteria indicates the absence of an overfitting problem. [Formula: see text]The comparison results showed the Random Forest algorithm had the best predictive performance compared to other algorithms with Adj-[Formula: see text], RMSE, MAD, and MAPE values of 0.75, 3.683, 2.876, and 10.112, respectively. In conclusion, the results obtained through Multiple Linear Regression for the live weights of Akkaraman lambs were less accurate than the results obtained through artificial neural network analysis.

An overview of deep learning applications in precocious puberty and thyroid dysfunction

In the last decade, deep learning methods have garnered a great deal of attention in endocrinology research. In this article, we provide a summary of current deep learning applications in endocrine disorders caused by either precocious onset of adult hormone or abnormal amount of hormone production. To give access to the broader audience, we start with a gentle introduction to deep learning and its most commonly used architectures, and then we focus on the research trends of deep learning applications in thyroid dysfunction classification and precocious puberty diagnosis. We highlight the strengths and weaknesses of various approaches and discuss potential solutions to different challenges. We also go through the practical considerations useful for choosing (and building) the deep learning model, as well as for understanding the thought process behind different decisions made by these models. Finally, we give concluding remarks and future directions.

Non-invasive thyroid detection based on electroglottogram signal using machine learning classifiers

Thyroid is a butterfly shaped gland located in the neck region. Hormones are secreted by the thyroid gland that is responsible for various functions that maintain metabolism of the body. The variance in secretion of the hormones causes disorders such as Hyperthyroidism or Hypothyroidism. Electroglottography signal is a bio signal which represents the impedance that exist between the glottis regions. The study aims at design and development of an hardware circuit for the acquisition of Electroglottogram signal from normal and thyroid subjects is proposed followed by feature extraction from the acquired bio signal is performed. Further, machine learning classifiers were used to classify the normal and thyroid individuals. This modality of acquisition is non-invasive. Performance evaluation is done by testing various classifiers to study the accuracy. The classifiers tested were Random Forest, Random Tree, Bayes Net, Multilayer Perceptron, Simple Logistic classifier, and One-R classifier. Classifiers such as Random Forest, Random Tree, and Multilayer Perceptron showed high accuracy. The accuracy estimated by these classifiers was tested and its ROC curves with AUC scores were derived. The highest accuracy was reported for Simple Logistic classifier which was about 95.1%. Random Forest and Random Tree reported 93.5% and 91.9% respectively. Similarly, Multilayer Perceptron and Bayes Net gave 93.5% and 91.9%. The One-R classifier algorithm reported the lowest accuracy of 90.3% among the studied classifier algorithms. The ROC-AUC score for the classifiers were also reported to be more than 0.9 which is considered more promising and supports the acquisition and processing methodology. Hence the proposed technique can be efficiently used to diagnose thyroid non-invasively.

Prediction of daily suspended sediment load (SSL) using new optimization algorithms and soft computing models

Accurate modeling and prediction of suspended sediment load (SSL) in rivers have an important role in environmental science and design of engineering structures and are vital for watershed management. Since different parameters such as rainfall, temperature, and discharge with the different lag times have significant effects on the SSL, quantifying and understanding nonlinear interactions of the sediment dynamics has always been a challenge. In this study, three soft computing models (multilayer perceptron (MLP), adaptive neuro-fuzzy system (ANFIS), and radial basis function neural network (RBFNN)) were used to predict daily SSL. Four optimization algorithms (sine–cosine algorithm (SCA), particle swarm optimization (PSO), firefly algorithm (FFA), and bat algorithm (BA)) were used to improve the capability of SSL prediction of the models. Data from gauging stations at the mouth of the Kasilian and Talar rivers in northern Iran were used in the analysis. The selection of input combinations for the models was based on principal component analysis (PCA). Uncertainty in sequential uncertainty fitting (SUFI-2) and performance indicators were used to assess the potential of models. Taylor diagrams were used to visualize the match between model output and observed values. Assessment of daily SSL predictions for Talar station revealed that ANFIS-SCA yielded the best results (RMSE (root mean square error): 934.2 ton/day, MAE (mean absolute error): 912.2 ton/day, NSE (Nash–Sutcliffe efficiency): 0.93, PBIAS: 0.12). ANFIS-SCA also yielded the best results for Kasilian station (RMSE: 1412.10 ton/day, MAE: 1403.4 ton/day, NSE: 0.92, PBIAS: 0.14). The Taylor diagram confirmed that ANFIS-SCA achieved the best match between observed and predicted values for various hydraulic and hydrological parameters at both Talar and Kasilian stations. Further, the models were tested in Eagel Creek Basin, Indiana state, USA. The results indicated that the ANFIS-SCA model reduced RMSE by 15% and 21% compared to the MLP-SCA and RBFNN-SCA models in the training phase. Comparing models performance indicated that the ANFIS-SCA model could decrease MAE error compared to ANFIS-BA, ANFIS-PSO, ANFIS-FFA, and ANFIS models by 18%, 32%, 37%, and 49% in the training phase, respectively. The results indicated that the integration of optimization algorithms and soft computing models can improve the ability of models for predicting SSL. Additionally, the hybridization of soft computing models with optimization algorithms can decrease the uncertainty of models.

Alignment-Free Method to Predict Enzyme Classes and Subclasses

The Enzyme Classification (EC) number is a numerical classification scheme for enzymes, established using the chemical reactions they catalyze. This classification is based on the recommendation of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology. Six enzyme classes were recognised in the first Enzyme Classification and Nomenclature List, reported by the International Union of Biochemistry in 1961. However, a new enzyme group was recently added as the six existing EC classes could not describe enzymes involved in the movement of ions or molecules across membranes. Such enzymes are now classified in the new EC class of translocases (EC 7). Several computational methods have been developed in order to predict the EC number. However, due to this new change, all such methods are now outdated and need updating. In this work, we developed a new multi-task quantitative structure-activity relationship (QSAR) method aimed at predicting all 7 EC classes and subclasses. In so doing, we developed an alignment-free model based on artificial neural networks that proved to be very successful.

Optimized multi-level elongated quinary patterns for the assessment of thyroid nodules in ultrasound images

Ultrasound imaging is one of the most common visualizing tools used by radiologists to identify the location of thyroid nodules. However, visual assessment of nodules is difficult and often affected by inter- and intra-observer variabilities. Thus, a computer-aided diagnosis (CAD) system can be helpful to cross-verify the severity of nodules. This paper proposes a new CAD system to characterize thyroid nodules using optimized multi-level elongated quinary patterns. In this study, higher order spectral (HOS) entropy features extracted from these patterns appropriately distinguished benign and malignant nodules under particle swarm optimization (PSO) and support vector machine (SVM) frameworks. Our CAD algorithm achieved a maximum accuracy of 97.71% and 97.01% in private and public datasets respectively. The evaluation of this CAD system on both private and public datasets confirmed its effectiveness as a secondary tool in assisting radiological findings.

Fusion of spatial gray level dependency and fractal texture features for the characterization of thyroid lesions

Thyroid is a small gland situated at the anterior side of the neck and one of the largest glands of the endocrine system. The abrupt cell growth or malignancy in the thyroid gland may cause thyroid cancer. Ultrasound images distinctly represent benign and malignant lesions, but accuracy may be poor due to subjective interpretation. Computer Aided Diagnosis (CAD) can minimize the errors created due to subjective interpretation and assists to make fast accurate diagnosis. In this work, fusion of Spatial Gray Level Dependence Features (SGLDF) and fractal textures are used to decipher the intrinsic structure of benign and malignant thyroid lesions. These features are subjected to graph based Marginal Fisher Analysis (MFA) to reduce the number of features. The reduced features are subjected to various ranking methods and classifiers. We have achieved an average accuracy, sensitivity and specificity of 97.52%, 90.32% and 98.57% respectively using Support Vector Machine (SVM) classifier. The achieved maximum Area Under Curve (AUC) is 0.9445. Finally, Thyroid Clinical Risk Index (TCRI) a single number is developed using two MFA features to discriminate the two classes. This prototype system is ready to be tested with huge diverse database.