1
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Shen L, Monasson O, Peroni E, Le Bideau F, Messaoudi S. Electrochemical Nickel-Catalyzed Selective Inter- and Intramolecular Arylations of Cysteine-Containing Peptides. Angew Chem Int Ed Engl 2023; 62:e202315748. [PMID: 37906608 DOI: 10.1002/anie.202315748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 10/30/2023] [Accepted: 10/31/2023] [Indexed: 11/02/2023]
Abstract
Here we report a simple electrochemical route towards the synthesis of S-arylated peptides by a site selective coupling of peptides with aryl halides under base free conditions. This approach demonstrates the power of electrochemistry to access both highly complex peptide conjugates and cyclic peptides.
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Affiliation(s)
- Linhua Shen
- Université Paris-Saclay, CNRS, BioCIS, 92290, Orsay, France
| | - Olivier Monasson
- Université Paris-Saclay, CNRS, BioCIS, 92290, Orsay, France
- CY Cergy Paris Université, CNRS, BioCIS, 95000, Cergy Pontoise, France
| | - Elisa Peroni
- Université Paris-Saclay, CNRS, BioCIS, 92290, Orsay, France
- CY Cergy Paris Université, CNRS, BioCIS, 95000, Cergy Pontoise, France
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2
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Libman A, Ben-Lulu M, Gaster E, Bera R, Shames AI, Shaashua O, Vershinin V, Torubaev Y, Pappo D. Multicopper Clusters Enable Oxidative Phenol Macrocyclization (OxPM) of Peptides. J Am Chem Soc 2023; 145:21002-21011. [PMID: 37721386 DOI: 10.1021/jacs.3c06978] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
The biosynthesis of glycopeptide antibiotics such as vancomycin and other biologically active biaryl-bridged and diaryl ether-linked macrocyclic peptides includes key enzymatic oxidative phenol macrocyclization(s) of linear precursors. However, a simple and step-economical biomimetic version of this transformation remains underdeveloped. Here, we report highly efficient conditions for preparing biaryl-bridged and diaryl ether-linked macrocyclic peptides based on multicopper(II) clusters. The selective syntheses of ring models of vancomycin and the arylomycin cyclic core illustrate the potential of this technology to facilitate the assembly of complex antibiotic macrocyclic peptides, whose syntheses are considered highly challenging. The unprecedented ability of multicopper(II) clusters to chelate tethered diphenols and promote intramolecular over intermolecular coupling reactions demonstrates that copper clusters can catalyze redox transformations that cannot be accessed by smaller metal catalysts.
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Affiliation(s)
- Anna Libman
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Mor Ben-Lulu
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Eden Gaster
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Ratnadeep Bera
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Alexander I Shames
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Omer Shaashua
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Vlada Vershinin
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Yury Torubaev
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - Doron Pappo
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
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3
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Diamandas M, Heller NW, Yudin AK. Nitrilium ion trapping as a strategy to access structurally diverse heterobiaryl-containing peptide macrocycles. Chem Sci 2023; 14:9482-9487. [PMID: 37712035 PMCID: PMC10498670 DOI: 10.1039/d3sc03058j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 08/04/2023] [Indexed: 09/16/2023] Open
Abstract
Biaryl and heterobiaryl-containing cyclic peptides represent promising scaffolds for the development of bioactive molecules. The incorporation of heterobiaryl motifs continues to pose synthetic challenges, which is partially due to the difficulties in effecting late-stage metal-catalyzed cross-couplings. We report a new strategy to form heterobiaryls that is based on trapping nitrilium ions. The sequence is exemplified using oxadiazole- and oxazole-containing biaryl linkages. NMR analysis and molecular dynamics simulations reveal structural control elements common to each member of the heterobiaryl containing peptide family in this study. Strategic substitutions on the C-terminal aminobenzoic acid moiety paired with installation of oxadiazole or oxazole heterobiaryl backbone linkages allow for the modulation of peptide backbone conformation, which should assist efforts to optimize the biophysical properties of peptide macrocycles.
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Affiliation(s)
- Matthew Diamandas
- Department of Chemistry, University of Toronto Toronto ON M5S 3H6 Canada
| | - Nicholas W Heller
- Department of Chemistry, University of Toronto Toronto ON M5S 3H6 Canada
| | - Andrei K Yudin
- Department of Chemistry, University of Toronto Toronto ON M5S 3H6 Canada
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4
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Tan Y, Wu J, Song L, Zhang M, Hipolito CJ, Wu C, Wang S, Zhang Y, Yin Y. Merging the Versatile Functionalities of Boronic Acid with Peptides. Int J Mol Sci 2021; 22:ijms222312958. [PMID: 34884766 PMCID: PMC8657650 DOI: 10.3390/ijms222312958] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 11/23/2021] [Accepted: 11/24/2021] [Indexed: 11/16/2022] Open
Abstract
Peptides inherently feature the favorable properties of being easily synthesized, water-soluble, biocompatible, and typically non-toxic. Thus, boronic acid has been widely integrated with peptides with the goal of discovering peptide ligands with novel biological activities, and this effort has led to broad applications. Taking the integration between boronic acid and peptide as a starting point, we provide an overview of the latest research advances and highlight the versatile and robust functionalities of boronic acid. In this review, we summarize the diverse applications of peptide boronic acids in medicinal chemistry and chemical biology, including the identification of covalent reversible enzyme inhibitors, recognition, and detection of glycans on proteins or cancer cell surface, delivery of siRNAs, development of pH responsive devices, and recognition of RNA or bacterial surfaces. Additionally, we discuss boronic acid-mediated peptide cyclization and peptide modifications, as well as the facile chemical synthesis of peptide boronic acids, which paved the way for developing a growing number of peptide boronic acids.
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Affiliation(s)
- Yahong Tan
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Junjie Wu
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Lulu Song
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Mengmeng Zhang
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Christopher John Hipolito
- Screening & Compound Profiling, Quantitative Biosciences, Merck & Co., Inc., Kenilworth, NJ 07033, USA;
| | - Changsheng Wu
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Siyuan Wang
- Department of Medicinal Chemistry, College of Pharmacy, Shenzhen Technology University, Shenzhen 518118, China
- Correspondence: (S.W.); (Y.Y.)
| | - Youming Zhang
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
| | - Yizhen Yin
- State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China; (Y.T.); (J.W.); (L.S.); (M.Z.); (C.W.); (Y.Z.)
- Correspondence: (S.W.); (Y.Y.)
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5
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Banga S, Kaur R, Babu SA. Construction of Racemic and Enantiopure Biaryl Unnatural Amino Acid Derivatives via Pd(II)‐Catalyzed Arylation of Unactivated Csp
3
−H Bonds. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100683] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Shefali Banga
- Department of Chemical Sciences Indian Institute of Science Education and Research Mohali Knowledge City Sector 81 SAS Nagar, Mohali, Manauli P.O. Punjab 140306 India
| | - Ramandeep Kaur
- Department of Chemical Sciences Indian Institute of Science Education and Research Mohali Knowledge City Sector 81 SAS Nagar, Mohali, Manauli P.O. Punjab 140306 India
| | - Srinivasarao Arulananda Babu
- Department of Chemical Sciences Indian Institute of Science Education and Research Mohali Knowledge City Sector 81 SAS Nagar, Mohali, Manauli P.O. Punjab 140306 India
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6
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Ng-Choi I, Figueras E, Oliveras À, Feliu L, Planas M. Solid-Phase Synthesis of Biaryl Cyclic Lipopeptides Derived from Arylomycins. ACS OMEGA 2020; 5:23401-23412. [PMID: 32954193 PMCID: PMC7496001 DOI: 10.1021/acsomega.0c03352] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
An efficient approach for the solid-phase synthesis of N-methylated tailed biaryl cyclic lipopeptides based on the structure of arylomycins was established. Each of these analogues incorporates an N-terminal linear lipopeptide attached to a biaryl cyclic tripeptide containing a Phe-Tyr, a Tyr-Tyr, or a His-Tyr linkage. This methodology first involved an intramolecular Suzuki-Miyaura arylation of a linear peptidyl resin incorporating the corresponding halogenated amino acid at the N-terminus and a boronotyrosine at the C-terminus. After N-methylation of the resulting biaryl cyclic peptidyl resin, the N-methylated lipopeptidyl tail was then assembled. The biaryl cyclic lipopeptides were purified and characterized.
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7
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Han B, Li B, Qi L, Yang P, He G, Chen G. Construction of Cyclophane-Braced Peptide Macrocycles via Palladium-Catalyzed Picolinamide-Directed Intramolecular C(sp2)–H Arylation. Org Lett 2020; 22:6879-6883. [DOI: 10.1021/acs.orglett.0c02422] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Boyang Han
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Bo Li
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Liping Qi
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Peng Yang
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Gang He
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Gong Chen
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
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8
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Solid-Phase Synthesis of Biaryl Cyclic Peptides Containing a Histidine-Phenylalanine Linkage. Int J Pept Res Ther 2020. [DOI: 10.1007/s10989-019-09877-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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9
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Guéret SM, Thavam S, Carbajo RJ, Potowski M, Larsson N, Dahl G, Dellsén A, Grossmann TN, Plowright AT, Valeur E, Lemurell M, Waldmann H. Macrocyclic Modalities Combining Peptide Epitopes and Natural Product Fragments. J Am Chem Soc 2020; 142:4904-4915. [PMID: 32058716 PMCID: PMC7307906 DOI: 10.1021/jacs.0c00269] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
![]()
“Hot
loop” protein segments have variable structure
and conformation and contribute crucially to protein–protein
interactions. We describe a new hot loop mimicking modality, termed
PepNats, in which natural product (NP)-inspired structures are incorporated
as conformation-determining and -restricting structural elements into
macrocyclic hot loop-derived peptides. Macrocyclic PepNats representing
hot loops of inducible nitric oxide synthase (iNOS) and human agouti-related
protein (AGRP) were synthesized on solid support employing macrocyclization
by imine formation and subsequent stereoselective 1,3-dipolar cycloaddition
as key steps. PepNats derived from the iNOS DINNN hot loop and the
AGRP RFF hot spot sequence yielded novel and potent ligands of the
SPRY domain-containing SOCS box protein 2 (SPSB2) that binds to iNOS,
and selective ligands for AGRP-binding melanocortin (MC) receptors.
NP-inspired fragment absolute configuration determines the conformation
of the peptide part responsible for binding. These results demonstrate
that combination of NP-inspired scaffolds with peptidic epitopes enables
identification of novel hot loop mimics with conformationally constrained
and biologically relevant structure.
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Affiliation(s)
- Stéphanie M Guéret
- Department of Chemical Biology, AstraZeneca-Max Planck Institute Satellite Unit, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Sasikala Thavam
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Rodrigo J Carbajo
- Chemistry, Oncology R&D, AstraZeneca, Cambridge CB2 0SL, United Kingdom
| | - Marco Potowski
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund University, 44227 Dortmund, Germany
| | - Niklas Larsson
- Discovery Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Göran Dahl
- Structure, Biophysics & Fragment Based Lead Generation, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Anita Dellsén
- Mechanistic Biology & Profiling, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Tom N Grossmann
- Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Alleyn T Plowright
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Eric Valeur
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Malin Lemurell
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Herbert Waldmann
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund University, 44227 Dortmund, Germany
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10
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Ben‐Lulu M, Gaster E, Libman A, Pappo D. Synthesis of Biaryl‐Bridged Cyclic Peptides via Catalytic Oxidative Cross‐Coupling Reactions. Angew Chem Int Ed Engl 2020; 59:4835-4839. [DOI: 10.1002/anie.201913305] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 11/21/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Mor Ben‐Lulu
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Eden Gaster
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Anna Libman
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Doron Pappo
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
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11
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Ben‐Lulu M, Gaster E, Libman A, Pappo D. Synthesis of Biaryl‐Bridged Cyclic Peptides via Catalytic Oxidative Cross‐Coupling Reactions. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201913305] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Mor Ben‐Lulu
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Eden Gaster
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Anna Libman
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
| | - Doron Pappo
- Department of ChemistryBen-Gurion University of the Negev Beer Sheva 84105 Israel
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12
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13
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Ng-Choi I, Oliveras À, Feliu L, Planas M. Solid-phase synthesis of biaryl bicyclic peptides containing a 3-aryltyrosine or a 4-arylphenylalanine moiety. Beilstein J Org Chem 2019; 15:761-768. [PMID: 30992724 PMCID: PMC6444451 DOI: 10.3762/bjoc.15.72] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Accepted: 03/09/2019] [Indexed: 12/22/2022] Open
Abstract
A methodology for the solid-phase synthesis of biaryl bicyclic peptides containing a Phe-Phe, a Phe-Tyr or a Tyr-Tyr motif has been devised. This approach comprises two key steps. The first one involves the cyclization of a linear peptidyl resin containing the corresponding halo- and boronoamino acids via a microwave-assisted Suzuki–Miyaura cross coupling. This step is followed by the macrolactamization of the resulting biaryl monocyclic peptidyl resin leading to the formation of the expected biaryl bicyclic peptide. This study provides the first solid-phase synthesis of this type of bicyclic compounds being amenable to prepare a diversity of synthetic or natural biaryl bicyclic peptides.
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Affiliation(s)
- Iteng Ng-Choi
- LIPPSO, Departament de Química, University of Girona, Maria Aurèlia Capmany 69, Girona 17003, Spain
| | - Àngel Oliveras
- LIPPSO, Departament de Química, University of Girona, Maria Aurèlia Capmany 69, Girona 17003, Spain
| | - Lidia Feliu
- LIPPSO, Departament de Química, University of Girona, Maria Aurèlia Capmany 69, Girona 17003, Spain
| | - Marta Planas
- LIPPSO, Departament de Química, University of Girona, Maria Aurèlia Capmany 69, Girona 17003, Spain
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14
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Sengupta S, Chandrasekaran S. Modifications of amino acids using arenediazonium salts. Org Biomol Chem 2019; 17:8308-8329. [DOI: 10.1039/c9ob01471c] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Aryl transfer reactions from arenediazonium salts have started to make their impact in chemical biology with initial forays in the arena of arylative modifications and bio-conjugations of amino acids, peptides and proteins.
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Affiliation(s)
- Saumitra Sengupta
- Department of Organic Chemistry
- Indian Institute of Science
- Bangalore
- India
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15
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García-Pindado J, Willemse T, Goss R, Maes BUW, Giralt E, Ballet S, Teixidó M. Bromotryptophans and their incorporation in cyclic and bicyclic privileged peptides. Biopolymers 2018. [DOI: 10.1002/bip.23112] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Júlia García-Pindado
- Institute for Research in Biomedicine (IRB Barcelona), Chemistry and Molecular Pharmacology Program, Barcelona Institute of Science and Technology (BIST); Barcelona 08028 Spain
| | - Tom Willemse
- Research Group of Organic, Department of Chemistry; Vrije Universiteit Brussel; Brussels 1050 Belgium
- Research Group of Organic, Department of Bioengineering Sciences; Vrije Universiteit Brussel; Brussels 1050 Belgium
- Organic Synthesis; University of Antwerp; Antwerp B-2020 Belgium
| | - Rebecca Goss
- School of Chemistry and BSRC; University of St Andrews; St Andrews KY16 9ST United Kingdom
| | - Bert U. W. Maes
- Organic Synthesis; University of Antwerp; Antwerp B-2020 Belgium
| | - Ernest Giralt
- Institute for Research in Biomedicine (IRB Barcelona), Chemistry and Molecular Pharmacology Program, Barcelona Institute of Science and Technology (BIST); Barcelona 08028 Spain
- Department of Inorganic and Organic Chemistry; University of Barcelona; Barcelona 08028 Spain
| | - Steven Ballet
- Research Group of Organic, Department of Chemistry; Vrije Universiteit Brussel; Brussels 1050 Belgium
- Research Group of Organic, Department of Bioengineering Sciences; Vrije Universiteit Brussel; Brussels 1050 Belgium
| | - Meritxell Teixidó
- Institute for Research in Biomedicine (IRB Barcelona), Chemistry and Molecular Pharmacology Program, Barcelona Institute of Science and Technology (BIST); Barcelona 08028 Spain
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16
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Thombare VJ, Holden JA, Pal S, Reynolds EC, Chattopadhyay A, O'Brien-Simpson NM, Hutton CA. Antimicrobial activity of simplified mimics of celogentin C. Tetrahedron 2018. [DOI: 10.1016/j.tet.2017.12.032] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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17
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Zhang B, Wang HW, Kang YS, Zhang P, Xu HJ, Lu Y, Sun WY. Rhodium-Catalyzed Direct Ortho C–H Arylation Using Ketone as Directing Group with Boron Reagent. Org Lett 2017; 19:5940-5943. [DOI: 10.1021/acs.orglett.7b02931] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Bing Zhang
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Huai-Wei Wang
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Yan-Shang Kang
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Ping Zhang
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Hua-Jin Xu
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Yi Lu
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
| | - Wei-Yin Sun
- Coordination Chemistry Institute,
State Key Laboratory of Coordination Chemistry, School of Chemistry
and Chemical Engineering, Nanjing National Laboratory of Microstructures,
Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210023, China
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18
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García-Pindado J, Royo S, Teixidó M, Giralt E. Bike peptides: a ride through the membrane. J Pept Sci 2017; 23:294-302. [DOI: 10.1002/psc.2993] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Revised: 02/20/2017] [Accepted: 02/22/2017] [Indexed: 12/12/2022]
Affiliation(s)
- Júlia García-Pindado
- Institute for Research in Biomedicine (IRB Barcelona); Barcelona Institute of Science and Technology (BIST); 08028 Barcelona Spain
| | - Soledad Royo
- Institute for Research in Biomedicine (IRB Barcelona); Barcelona Institute of Science and Technology (BIST); 08028 Barcelona Spain
| | - Meritxell Teixidó
- Institute for Research in Biomedicine (IRB Barcelona); Barcelona Institute of Science and Technology (BIST); 08028 Barcelona Spain
| | - Ernest Giralt
- Institute for Research in Biomedicine (IRB Barcelona); Barcelona Institute of Science and Technology (BIST); 08028 Barcelona Spain
- Department of Organic Chemistry; University of Barcelona; 08028 Barcelona Spain
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19
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20
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The Suzuki–Miyaura Cross-Coupling as a Versatile Tool for Peptide Diversification and Cyclization. Catalysts 2017. [DOI: 10.3390/catal7030074] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
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21
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Qiao JX, Fraunhoffer KJ, Hsiao Y, Li YX, Wang C, Wang TC, Poss MA. Synthesis of Fmoc-Protected Arylphenylalanines (Bip Derivatives) via Nonaqueous Suzuki-Miyaura Cross-Coupling Reactions. J Org Chem 2016; 81:9499-9506. [DOI: 10.1021/acs.joc.6b01965] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jennifer X. Qiao
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Kenneth J. Fraunhoffer
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Yi Hsiao
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Yi-Xin Li
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Chunlei Wang
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Tammy C. Wang
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
| | - Michael A. Poss
- Discovery Chemistry, ‡Chemical and Synthetic
Development,
and §Pharmaceutical Candidate
Optimization, Research and Development, Bristol-Myers Squibb Company, P.O. Box
4000, Princeton, New Jersey 08543-4000, United States
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22
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Aftab U, Sajid I. Antitumor Peptides from Streptomyces sp. SSA 13, Isolated from Arabian Sea. Int J Pept Res Ther 2016. [DOI: 10.1007/s10989-016-9552-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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23
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Morejón MC, Laub A, Westermann B, Rivera DG, Wessjohann LA. Solution- and Solid-Phase Macrocyclization of Peptides by the Ugi-Smiles Multicomponent Reaction: Synthesis of N-Aryl-Bridged Cyclic Lipopeptides. Org Lett 2016; 18:4096-9. [PMID: 27505031 DOI: 10.1021/acs.orglett.6b02001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A new multicomponent methodology for the solution- and solid-phase macrocyclization of peptides is described. The approach comprises the utilization of the Ugi-Smiles reaction for the cyclization of 3-nitrotyrosine-containing peptides either by the N-terminus or the lysine side-chain amino groups. Both the on-resin and solution cyclizations took place with good to excellent efficiency in the presence of an aldehyde and a lipidic isocyanide, while the use of paraformaldehyde required an aminocatalysis-mediated imine formation prior to the on-resin Ugi-Smiles ring closure. The introduction of a turn motif in the peptide sequence facilitated the cyclization step, shortened the reaction time, and delivered crude products with >90% purity. This powerful method provided a variety of structurally novel N-aryl-bridged cyclic lipopeptides occurring as single atropisomers.
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Affiliation(s)
- Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Annegret Laub
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
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24
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Mendive-Tapia L, Bertran A, García J, Acosta G, Albericio F, Lavilla R. Constrained Cyclopeptides: Biaryl Formation through Pd-Catalyzed C−H Activation in Peptides-Structural Control of the Cyclization vs. Cyclodimerization Outcome. Chemistry 2016; 22:13114-9. [DOI: 10.1002/chem.201601832] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Indexed: 01/08/2023]
Affiliation(s)
- Lorena Mendive-Tapia
- Institute for Research in Biomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
| | - Alexandra Bertran
- Institute for Research in Biomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
| | - Jesús García
- Institute for Research in Biomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
| | - Gerardo Acosta
- CIBER-BBN; Networking Centre in Bioengineering, Biomaterials and Nanomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
| | - Fernando Albericio
- CIBER-BBN; Networking Centre in Bioengineering, Biomaterials and Nanomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
- Department of Organic Chemistry; University of Barcelona; Martí i Franqués 1-11 08028 Barcelona Spain
- School of Chemistry; University of KwaZulu-Natal; 4001- Durban South Africa
| | - Rodolfo Lavilla
- CIBER-BBN; Networking Centre in Bioengineering, Biomaterials and Nanomedicine, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
- Laboratory of Organic Chemistry; Faculty of Pharmacy; University of Barcelona, Barcelona Science Park; Baldiri Reixac 10-12 08028 Barcelona Spain
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25
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Vasconcelos SNS, Drewes CC, de Vinci Kanda Kupa L, Farsky SHP, Stefani HA. Evaluation of toxicity on epithelial and tumor cells of biaryl dipeptide tyrosines. Eur J Med Chem 2016; 114:1-7. [PMID: 26974369 DOI: 10.1016/j.ejmech.2016.02.062] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 02/23/2016] [Accepted: 02/24/2016] [Indexed: 10/22/2022]
Abstract
We report a method to obtain biaryl dipeptide tyrosine via Suzuki-Miyaura and alkynyl dipeptide tyrosine by Sonogashira cross-coupling reactions. Analysis of the biological action of biaryl dipeptide tyrosine 4d compound showed its ability to impair the metabolism and proliferation of SK-Mel-28 human melanoma lineage cells, independently of mitochondrial membrane depolarization, apoptosis and necrosis. Moreover, 4d compound did not cause toxicity to human umbilical vein endothelial cells (HUVEC), suggesting its toxic specificity to cancer cells.
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Affiliation(s)
- Stanley N S Vasconcelos
- Departamento de Farmácia, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Carine C Drewes
- Departamento de Análises Clínicas e Toxicológicas, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Leonard de Vinci Kanda Kupa
- Departamento de Análises Clínicas e Toxicológicas, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Sandra H P Farsky
- Departamento de Análises Clínicas e Toxicológicas, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Hélio A Stefani
- Departamento de Farmácia, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo, SP, Brazil.
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26
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Jebri K, Galya N, Zgonnik V, Mazières MR, Génisson Y, Guillen F, Ben Ayed T, Baltas M, Plaquevent JC. Peptide Synthesis in Ionic Liquids (PEPSIL): All You Need is in the Toolbox! FRENCH-UKRAINIAN JOURNAL OF CHEMISTRY 2016. [DOI: 10.17721/fujcv4i1p3-13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
This personal account describes our studies regarding peptide synthesis in ionic liquids (PEPSIL). In addition, we summarize our experiments in which the use of ionic liquids gives simple and promising access to unnatural amino acids in an enantiomerically enriched form. Extension of PEPSIL method to complex structures such as cyclopeptides is also discussed. Some of these cyclopeptides are the direct precursors of bioactive and pharmaceutical compounds.
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27
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Bartoloni M, Jin X, Marcaida MJ, Banha J, Dibonaventura I, Bongoni S, Bartho K, Gräbner O, Sefkow M, Darbre T, Reymond JL. Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability. Chem Sci 2015; 6:5473-5490. [PMID: 29861888 PMCID: PMC5949603 DOI: 10.1039/c5sc01699a] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2015] [Accepted: 07/12/2015] [Indexed: 12/28/2022] Open
Abstract
Double cyclization of short linear peptides obtained by solid phase peptide synthesis was used to prepare bridged bicyclic peptides (BBPs) corresponding to the topology of bridged bicyclic alkanes such as norbornane. Diastereomeric norbornapeptides were investigated by 1H-NMR, X-ray crystallography and CD spectroscopy and found to represent rigid globular scaffolds stabilized by intramolecular backbone hydrogen bonds with scaffold geometries determined by the chirality of amino acid residues and sharing structural features of β-turns and α-helices. Proteome profiling by capture compound mass spectrometry (CCMS) led to the discovery of the norbornapeptide 27c binding selectively to calmodulin as an example of a BBP protein binder. This and other BBPs showed high stability towards proteolytic degradation in serum.
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Affiliation(s)
- Marco Bartoloni
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
| | - Xian Jin
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
| | - Maria José Marcaida
- School of Life Sciences , Ecole Polytechnique de Lausanne , 1015 Lausanne , Switzerland
| | - João Banha
- caprotec bioanalytics GmbH , Berlin , Germany
| | - Ivan Dibonaventura
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
| | - Swathi Bongoni
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
| | | | | | | | - Tamis Darbre
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
| | - Jean-Louis Reymond
- Department of Chemistry and Biochemistry , University of Berne , Freiestrasse 3 , 3012 Berne , Switzerland .
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28
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Vasco AV, Pérez CS, Morales FE, Garay HE, Vasilev D, Gavín JA, Wessjohann LA, Rivera DG. Macrocyclization of Peptide Side Chains by the Ugi Reaction: Achieving Peptide Folding and Exocyclic N-Functionalization in One Shot. J Org Chem 2015; 80:6697-707. [DOI: 10.1021/acs.joc.5b00858] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Aldrin V. Vasco
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
- Facultad
de Ingeniería Química, Instituto Superior Politécnico José Antonio Echeverría, CUJAE, Calle 114 # 11901, 11500, La Habana, Cuba
| | - Carlos S. Pérez
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Fidel E. Morales
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Hilda E. Garay
- Synthetic Peptides
Group, Center for Genetic Engineering and Biotechnology, P.O. Box 6162, La Habana, Cuba
| | - Dimitar Vasilev
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - José A. Gavín
- Instituto
Universitario de Bioorgánica Antonio González and Departamento
de Química Orgánica, Universidad de La Laguna, 38206 La Laguna, Tenerife, Spain
| | - Ludger A. Wessjohann
- Department
of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle/Saale, Germany
| | - Daniel G. Rivera
- Center
for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
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29
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Mendive-Tapia L, Preciado S, García J, Ramón R, Kielland N, Albericio F, Lavilla R. New peptide architectures through C-H activation stapling between tryptophan-phenylalanine/tyrosine residues. Nat Commun 2015; 6:7160. [PMID: 25994485 PMCID: PMC4455059 DOI: 10.1038/ncomms8160] [Citation(s) in RCA: 214] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Accepted: 04/10/2015] [Indexed: 12/22/2022] Open
Abstract
Natural peptides show high degrees of specificity in their biological action. However, their therapeutical profile is severely limited by their conformational freedom and metabolic instability. Stapled peptides constitute a solution to these problems and access to these structures lies on a limited number of reactions involving the use of non-natural amino acids. Here, we describe a synthetic strategy for the preparation of unique constrained peptides featuring a covalent bond between tryptophan and phenylalanine or tyrosine residues. The preparation of such peptides is achieved in solution and on solid phase directly from the corresponding sequences having an iodo-aryl amino acid through an intramolecular palladium-catalysed C–H activation process. Moreover, complex topologies arise from the internal stapling of cyclopeptides and double intramolecular arylations within a linear peptide. Finally, as a proof of principle, we report the application to this new stapling method to relevant biologically active compounds. Macrocyclic, constrained peptides show promise in therapeutic applications due to the stable and defined conformations that can be produced. Here, the authors report a method to form macrocyclic peptides through C–H activation on tryptophan and coupling with iodo-substituted aryl amino acids
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Affiliation(s)
- Lorena Mendive-Tapia
- 1] Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain [2] Department of Organic Chemistry, University of Barcelona, Martí i Franqués 1-11, 08028 Barcelona, Spain [3] CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine
| | - Sara Preciado
- Department of Organic Chemistry, University of Barcelona, Martí i Franqués 1-11, 08028 Barcelona, Spain
| | - Jesús García
- Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain
| | - Rosario Ramón
- Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain
| | - Nicola Kielland
- Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain
| | - Fernando Albericio
- 1] Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain [2] Department of Organic Chemistry, University of Barcelona, Martí i Franqués 1-11, 08028 Barcelona, Spain [3] CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine [4] School of Chemistry, Yachay Tech, Yachay City of Knowledge, 100119 Urcuqui, Ecuador
| | - Rodolfo Lavilla
- 1] Barcelona Science Park, Baldiri Reixac 10-12, 08028 Barcelona, Spain [2] Laboratory of Organic Chemistry, Faculty of Pharmacy, University of Barcelona, Avda. Joan XXII s.n., 08028 Barcelona, Spain
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30
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Ricardo MG, Morales FE, Garay H, Reyes O, Vasilev D, Wessjohann LA, Rivera DG. Bidirectional macrocyclization of peptides by double multicomponent reactions. Org Biomol Chem 2015; 13:438-46. [DOI: 10.1039/c4ob01915f] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Peptide macrocyclization by multicomponent reactions.
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Affiliation(s)
- Manuel G. Ricardo
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
| | - Fidel E. Morales
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
| | - Hilda Garay
- Laboratory of Peptide Synthesis
- Physical-Chemistry Division
- Center for Genetic Engineering and Biotechnology
- La Habana
- Cuba
| | - Osvaldo Reyes
- Laboratory of Peptide Synthesis
- Physical-Chemistry Division
- Center for Genetic Engineering and Biotechnology
- La Habana
- Cuba
| | - Dimitar Vasilev
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry
- Leibniz Institute of Plant Biochemistry
- Halle/Saale
- Germany
| | - Daniel G. Rivera
- Center for Natural Products Research
- Faculty of Chemistry
- University of Havana
- La Habana
- Cuba
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31
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Misal Castro LC, Chatani N. Palladium(II)-Catalyzedortho-CH Arylation/Alkylation ofN-Benzoyl α-Amino Ester Derivatives. Chemistry 2014; 20:4548-53. [DOI: 10.1002/chem.201304978] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Indexed: 01/06/2023]
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32
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Abstract
Nitrogen-containing macrocyclic compounds (amines, amides, and N-heterocyclic derivatives) are important targets in supramolecular chemistry. This chapter discusses the importance of aza-macrocycles in general and, in particular, those receptors containing sugar unit(s). The combination of a carbohydrate scaffold bearing nitrogen-containing functional groups in macrocyclic molecules opens a convenient route to chiral receptors having potentially useful properties. The carbohydrate-based macrocycles discussed are classified into several general groups: (1) aza-crown ethers containing a carbohydrate subunit, (2) cyclic homooligomers from amino sugars, (3) sugar-based cryptands, (4) cyclic peptides containing amino sugar units (including C2- and C3-symmetrical macrocyclic glycopeptides), (5) nitrogen- containing glycophanes, and (6) 1,2,3-triazoles containing synthetic cyclodextrin analogues. The general strategies employed, as well as specific ones leading to such complex derivatives, are surveyed. Applications of such carbohydrate receptors, pointing to their importance as hosts in supramolecular chemistry, are discussed.
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33
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Mahindra A, Bagra N, Jain R. Palladium-Catalyzed Regioselective C-5 Arylation of Protected l-Histidine: Microwave-Assisted C–H Activation Adjacent to Donor Arm. J Org Chem 2013; 78:10954-9. [DOI: 10.1021/jo401934q] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Amit Mahindra
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, SAS Nagar, Punjab 160 062, India
| | - Nitin Bagra
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, SAS Nagar, Punjab 160 062, India
| | - Rahul Jain
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, SAS Nagar, Punjab 160 062, India
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34
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Nefzi A. Hantzsch based macrocyclization approach for the synthesis of thiazole containing cyclopeptides. Methods Mol Biol 2013; 1081:1-11. [PMID: 24014430 DOI: 10.1007/978-1-62703-652-8_1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
An innovative macrocyclization approach via high-yielding solid-phase intramolecular thioalkylation reaction is described. The reaction of S-nucleophiles with newly generated N-terminal 4-chloromethyl thiazoles leads to the desired cyclic products in high purities and good yields.
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Affiliation(s)
- Adel Nefzi
- Torrey Pines Institute for Molecular Studies, Port St. Lucie, FL, USA
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35
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Wang J, Liu H, Aceña JL, Houck D, Takeda R, Moriwaki H, Sato T, Soloshonok VA. Synthesis of bis-α,α′-amino acids through diastereoselective bis-alkylations of chiral Ni(ii)-complexes of glycine. Org Biomol Chem 2013; 11:4508-15. [PMID: 23715131 DOI: 10.1039/c3ob40594j] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Jiang Wang
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 555 Zu chong zhi Road, Shanghai 201203, People's Republic of China
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36
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Afonso A, Cussó O, Feliu L, Planas M. Solid-Phase Synthesis of Biaryl Cyclic Peptides Containing a 3-Aryltyrosine. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200832] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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37
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Ng-Choi I, Soler M, Cerezo V, Badosa E, Montesinos E, Planas M, Feliu L. Solid-Phase Synthesis of 5-Arylhistidine-Containing Peptides with Antimicrobial Activity Through a Microwave-Assisted Suzuki-Miyaura Cross-Coupling. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200291] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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38
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Meyer FM, Collins JC, Borin B, Bradow J, Liras S, Limberakis C, Mathiowetz AM, Philippe L, Price D, Song K, James K. Biaryl-bridged macrocyclic peptides: conformational constraint via carbogenic fusion of natural amino acid side chains. J Org Chem 2012; 77:3099-114. [PMID: 22352804 DOI: 10.1021/jo202105v] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
A general method for constraining peptide conformations via linkage of aromatic sidechains has been developed. Macrocyclization of suitably functionalized tri-, tetra- and pentapeptides via Suzuki-Miyaura cross-coupling has been used to generate side chain to side chain, biaryl-bridged 14- to 21-membered macrocyclic peptides. Biaryl bridges possessing three different configurations, meta-meta, meta-ortho, and ortho-meta, were systematically explored through regiochemical variation of the aryl halide and aryl boronate coupling partners, allowing fine-tuning of the resultant macrocycle conformation. Suzuki-Miyaura macrocyclizations were successfully achieved both in solution and on solid phase for all three sizes of peptide. This approach constitutes a means of constraining peptide conformation via direct carbogenic fusion of side chains of naturally occurring amino acids such as phenylalanine and tyrosine, and so is complementary to strategies involving non-natural, for example, hydrocarbon, bridges.
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Affiliation(s)
- Falco-Magnus Meyer
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, UniteUSA
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39
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Gulder T, Baran PS. Strained cyclophane natural products: Macrocyclization at its limits. Nat Prod Rep 2012; 29:899-934. [DOI: 10.1039/c2np20034a] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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40
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Berwe M, Jöntgen W, Krüger J, Cancho-Grande Y, Lampe T, Michels M, Paulsen H, Raddatz S, Weigand S. Scalable Synthesis of the Desoxy-biphenomycin B Core. Org Process Res Dev 2011. [DOI: 10.1021/op200207h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mathias Berwe
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Winfried Jöntgen
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Jochen Krüger
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Yolanda Cancho-Grande
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Thomas Lampe
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Martin Michels
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Holger Paulsen
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Siegfried Raddatz
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Stefan Weigand
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
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41
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Solid-phase synthesis of biaryl cyclic peptides by borylation and microwave-assisted intramolecular Suzuki–Miyaura reaction. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.01.084] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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42
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Colgin N, Flinn T, Cobb SL. Synthesis and properties of MIDA boronate containing aromatic amino acids: new peptide building blocks. Org Biomol Chem 2011; 9:1864-70. [PMID: 21283875 DOI: 10.1039/c0ob00847h] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein, we report the synthesis of novel phenylalanine and tyrosine derivatives containing a N-methyliminodiacetic acid boronate group. These compounds can be prepared enantiomerically pure, they are stable to column chromatography and they can be stored in air for two months without degradation occurring. This new class of boronate containing aromatic amino acids has potential applications in both peptide chemistry and natural product synthesis.
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Affiliation(s)
- Neil Colgin
- Department of Chemistry, Durham University, South Road, Durham, DH1 3LE, United Kingdom
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43
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Pitsinos EN, Vidali VP, Couladouros EA. Diaryl Ether Formation in the Synthesis of Natural Products. European J Org Chem 2011. [DOI: 10.1002/ejoc.201001520] [Citation(s) in RCA: 119] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Emmanuel N. Pitsinos
- Natural Products Synthesis and Bioorganic Chemistry Laboratory, Institute of Physical Chemistry, NCSR “ DEMOKRITOS”, P. O. Box 60228, 15310 Aghia Paraskevi, Greece
| | - Veroniki P. Vidali
- Natural Products Synthesis and Bioorganic Chemistry Laboratory, Institute of Physical Chemistry, NCSR “ DEMOKRITOS”, P. O. Box 60228, 15310 Aghia Paraskevi, Greece
| | - Elias A. Couladouros
- Natural Products Synthesis and Bioorganic Chemistry Laboratory, Institute of Physical Chemistry, NCSR “ DEMOKRITOS”, P. O. Box 60228, 15310 Aghia Paraskevi, Greece
- Chemistry Laboratories, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece, Fax: +30‐210‐677‐7849
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Dufour J, Neuville L, Zhu J. Intramolecular Suzuki-Miyaura reaction for the total synthesis of signal peptidase inhibitors, arylomycins A(2) and B(2). Chemistry 2010; 16:10523-34. [PMID: 20658499 DOI: 10.1002/chem.201000924] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Development of the total syntheses of arylomycins A(1) and B(2) is detailed. Key features of our approach include 1) formation of 14-membered meta,meta-cyclophane by an intramolecular Suzuki-Miyaura reaction; 2) incorporation of N-Me-4-hydroxyphenylglycine into the cyclization precursor, which avoids the late-stage low-yielding N-methylation step; 3) segment coupling of a fully elaborated peptide side chain to the macrocycle, which makes the synthesis highly convergent. Overall, arylomycin A(2) was obtained in 13 steps from L-Tyr for the longest linear sequence, in 13 % overall yield. Arylomycin B(2) was synthesized in 10 steps from L-3-nitro-Tyr, in 10 % overall yield.
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Affiliation(s)
- Jeremy Dufour
- Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 1, avenue de la terrasse, 91198 Gif-sur-Yvette, France
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45
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Nefzi A, Arutyunyan S, Fenwick JE. Two-step Hantzsch based macrocyclization approach for the synthesis of thiazole-containing cyclopeptides. J Org Chem 2010; 75:7939-41. [PMID: 21033717 DOI: 10.1021/jo1016822] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Macrocyclization via an efficient high-yielding solid-phase intramolecular thioalkylation reaction is described. The reaction of S-nucleophiles with newly generated N-terminal 4-chloromethyl thiazoles led to the desired macrocyclization products 5 in high purities and good overall yields.
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Affiliation(s)
- Adel Nefzi
- Torrey Pines Institute for Molecular Studies, 11350 SW Village Parkway, Port Saint Lucie, Florida 34987, United States
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46
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Hiroshima S, Matsumura D, Kochi T, Kakiuchi F. Control of product selectivity by a styrene additive in ruthenium-catalyzed C-H arylation. Org Lett 2010; 12:5318-21. [PMID: 20979377 DOI: 10.1021/ol102325f] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A unique effect of styrene additive on product selectivity was observed for RuH(2)(CO)(PPh(3))(3)-catalyzed C-H arylation of acetophenone derivatives bearing two ortho C-H bonds. Without styrene, the C-H arylation with arylboronates gives diarylation products as the major products throughout the reaction, but the use of styrene as an additive switches the product selectivity and leads to selective formation of monoarylation products.
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Affiliation(s)
- Shun Hiroshima
- Department of Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223-8522, Japan
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Kim CB, Lee SK, Park KY. Liquid-Phase Synthesis of Biaryl Compounds by the Hydrogenolysis of Pentaerythritol-Supported Biarylsulfonates. B KOREAN CHEM SOC 2010. [DOI: 10.5012/bkcs.2010.31.9.2459] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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48
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Afonso A, Rosés C, Planas M, Feliu L. Biaryl Peptides from 4-Iodophenylalanine by Solid-Phase Borylation and Suzuki-Miyaura Cross-Coupling. European J Org Chem 2010. [DOI: 10.1002/ejoc.200901350] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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49
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Feng Y, Chen G. Total Synthesis of Celogentin C by Stereoselective CH Activation. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200905134] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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50
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Masson G, Neuville L, Bughin C, Fayol A, Zhu J. Multicomponent Syntheses of Macrocycles. TOPICS IN HETEROCYCLIC CHEMISTRY 2010. [DOI: 10.1007/7081_2010_47] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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