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Avcı D, Özge Ö, Sönmez F, Tamer Ö, Başoğlu A, Atalay Y, Kurt BZ. In vitro α-glucosidase, docking and density functional theory studies on novel azide metal complexes. Future Med Chem 2024; 16:1109-1125. [PMID: 38916564 PMCID: PMC11229344 DOI: 10.1080/17568919.2024.2342650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 04/04/2024] [Indexed: 06/26/2024] Open
Abstract
Aim: The goal of this study is to synthesize new metal complexes containing N-methyl-1-(pyridin-2-yl)methanimine and azide ligands as α-glucosidase inhibitors for Type 2 diabetes. Materials & methods: The target complexes (12-16) were synthesized by reacting N-methyl-1-(pyridin-2-yl)methanimine (L1) with sodium azide in the presence of corresponding metal salts. The investigation of target protein interactions, vibrational, electronic and nonlinear optical properties for these complexes was performed by molecular docking and density functional theory studies. Results: Among these complexes, complex 13 (IC50 = 0.2802 ± 0.62 μM) containing Hg ion showed the highest α-glucosidase inhibitory property. On the other hand, significant results were detected for complexes containing Cu and Ag ions. Conclusion: Complex 13 may be an alternate anti-diabetic inhibitor according to in vitro/docking results.
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Affiliation(s)
- Davut Avcı
- Sakarya University, Faculty of Science, Department of Physics, 54187, Sakarya, Turkey
| | - Özgen Özge
- Sakarya University, Faculty of Science, Department of Physics, 54187, Sakarya, Turkey
- Cappadocia University, Health Vocational School, Ürgüp, 50400, Nevşehir, Turkey
| | - Fatih Sönmez
- Sakarya University of Applied Sciences, Pamukova Vocational High School, 54055, Sakarya, Turkey
| | - Ömer Tamer
- Sakarya University, Faculty of Science, Department of Physics, 54187, Sakarya, Turkey
| | - Adil Başoğlu
- Sakarya University, Faculty of Science, Department of Physics, 54187, Sakarya, Turkey
| | - Yusuf Atalay
- Sakarya University, Faculty of Science, Department of Physics, 54187, Sakarya, Turkey
| | - Belma Zengin Kurt
- Bezmialem Vakif University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 34093Istanbul, Turkey
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Özge Ö, Avcı D, Sönmez F, Tamer Ö, Dege N, Başoğlu A, Atalay Y, Kurt BZ. Synthesis, DFT calculations, α‐glucosidase inhibitor activity, and docking studies on Schiff base metal complexes containing isothiocyanate. Appl Organomet Chem 2023. [DOI: 10.1002/aoc.7084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/30/2023]
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Tahir MN, Ali A, Khalid M, Ashfaq M, Naveed M, Murtaza S, Shafiq I, Asghar MA, Orfali R, Perveen S. Efficient Synthesis of Imine-Carboxylic Acid Functionalized Compounds: Single Crystal, Hirshfeld Surface and Quantum Chemical Exploration. Molecules 2023; 28:molecules28072967. [PMID: 37049730 PMCID: PMC10096040 DOI: 10.3390/molecules28072967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 03/11/2023] [Accepted: 03/20/2023] [Indexed: 03/29/2023] Open
Abstract
Two aminobenzoic acid based crystalline imines (HMBA and DHBA) were synthesized through a condensation reaction of 4-aminobenzoic acid and substituted benzaldehydes. Single-crystal X-ray diffraction was employed for the determination of structures of prepared Schiff bases. The stability of super molecular structures of both molecules was achieved by intramolecular H-bonding accompanied by strong, as well as comparatively weak, intermolecular attractive forces. The comparative analysis of the non-covalent forces in HMBA and DHBA was performed by Hirshfeld surface analysis and an interaction energy study between the molecular pairs. Along with the synthesis, quantum chemical calculations were also accomplished at M06/6-311G (d, p) functional of density functional theory (DFT). The frontier molecular orbitals (FMOs), molecular electrostatic potential (MEP), natural bond orbitals (NBOs), global reactivity parameters (GRPs) and natural population (NPA) analyses were also carried out. The findings of FMOs found that Egap for HMBA was examined to be smaller (3.477 eV) than that of DHBA (3.7933 eV), which indicated a greater charge transference rate in HMBA. Further, the NBO analysis showed the efficient intramolecular charge transfer (ICT), as studied by Hirshfeld surface analysis.
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Affiliation(s)
| | - Akbar Ali
- Department of Chemistry, Government College University Faisalabad, Faisalabad 38000, Pakistan
- Correspondence: (A.A.); (M.K.); (R.O.)
| | - Muhammad Khalid
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
- Correspondence: (A.A.); (M.K.); (R.O.)
| | - Muhammad Ashfaq
- Department of Physics, University of Sargodha, Sargodha 40100, Pakistan
| | - Mubashir Naveed
- Department of Physics, University of Sargodha, Sargodha 40100, Pakistan
| | - Shahzad Murtaza
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
| | - Iqra Shafiq
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan
| | - Muhammad Adnan Asghar
- Department of Chemistry, Division of Science and Technology, University of Education, Lahore 54770, Pakistan
| | - Raha Orfali
- Department of Pharmacognosy, College of Pharmacy, King Saud University, P.O. Box 2457, Riyadh 11451, Saudi Arabia
- Correspondence: (A.A.); (M.K.); (R.O.)
| | - Shagufta Perveen
- Department of Chemistry, School of Computer, Mathematical and Natural Sciences, Morgan State University, Baltimore, MD 21251, USA
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Recent developments in synthetic α-glucosidase inhibitors: A comprehensive review with structural and molecular insight. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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N LT, K HM, S KC, S S, L M, P M, R JR, A SM, Karnan M, K LN. N-[2-(5-bromo-2-chloro-pyrimidin-4-yl)thio)-4-methoxy-phenyl]-4-chlorobenzenesulfonamide: The existence of H-bond and halogen bond interactions assisted supramolecular architecture – A quantum chemical investigation. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133476] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Martins GR, Schwalm CS, Carvalho CTD, Pinto LMDC. Co(II), Ni(II), and Zn(II) complexes based on new hybrid imine-pyrazole ligands: structural, spectroscopic, and electronic properties. J Mol Model 2022; 28:162. [PMID: 35597858 DOI: 10.1007/s00894-022-05109-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 04/18/2022] [Indexed: 10/18/2022]
Abstract
The present work reports the theoretical investigation of Co(II), Ni(II), and Zn(II) complexes containing Schiff bases (used as ligands) derived from the reaction of 2-hydroxy-1-naphthaldehyde with N-(2-aminoethyl) pyrazoles. The spectral analyses were carried out using infrared, Raman, and UV-Vis spectroscopy. Vibrational analyses were performed in order to investigate the mechanisms involving metal-ligand and intra-ligand vibrations and indicated the possibility of charge transfer related to the transitions n[Formula: see text]* and [Formula: see text]*. Structure optimizations and normal coordinate force field calculations were performed via the density functional theory (DFT) method at the HSE06/6-311G(d,p)/LanL2DZ level. A thorough analysis was also conducted regarding the nonlinear optical (NLO) properties and the natural bond orbital (NBO) of the complexes. The results show that these complexes have prospective application as materials for NLO. Furthermore, the NBO analysis confirms the coordination between the lone pair (LP) electrons of the donor atoms (O and N) and the metal acceptors. Finally, studies were conducted regarding the electronic properties of the complexes; among the properties investigated included the frontier molecular orbitals (FMO) and the molecular electrostatic potential (MEP), allowing to determine the energy gap and charge distribution.
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Affiliation(s)
- Gabriel Rodrigues Martins
- Instituto de Química, Universidade Federal de Mato Grosso do Sul, Campo Grande-MS, 79074-460, Brazil
| | - Cristiane Storck Schwalm
- Faculdade de Ciências Exatas e Tecnologia, Universidade Federal da Grande Dourados, Dourados-MS, 79804-970, Brazil
| | - Cláudio Teodoro de Carvalho
- Faculdade de Ciências Exatas e Tecnologia, Universidade Federal da Grande Dourados, Dourados-MS, 79804-970, Brazil
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Dege N, Tamer Ö, Şimşek M, Avcı D, Yaman M, Başoğlu A, Atalay Y. Experimental and theoretical approaches on structural, spectroscopic (FT‐IR and UV‐Vis), nonlinear optical and molecular docking analyses for Zn (II) and Cu (II) complexes of 6‐chloropyridine‐2‐carboxylic acid. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Necmi Dege
- Department of Physics, Faculty of Arts and Sciences Ondokuz Mayıs University Samsun Turkey
| | - Ömer Tamer
- Department of Physics, Faculty of Arts and Sciences Sakarya University Sakarya Turkey
| | - Merve Şimşek
- Department of Physics, Faculty of Arts and Sciences Sakarya University Sakarya Turkey
| | - Davut Avcı
- Department of Physics, Faculty of Arts and Sciences Sakarya University Sakarya Turkey
| | - Mavişe Yaman
- Department of Physics, Faculty of Arts and Sciences Ondokuz Mayıs University Samsun Turkey
| | - Adil Başoğlu
- Department of Physics, Faculty of Arts and Sciences Sakarya University Sakarya Turkey
| | - Yusuf Atalay
- Department of Physics, Faculty of Arts and Sciences Sakarya University Sakarya Turkey
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Farwa U, Raza MA. Heterocyclic compounds as a magic bullet for diabetes mellitus: a review. RSC Adv 2022; 12:22951-22973. [PMID: 36105949 PMCID: PMC9379558 DOI: 10.1039/d2ra02697j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 08/01/2022] [Indexed: 11/26/2022] Open
Abstract
Diabetes mellitus (DM) is a major metabolic disorder due to hyperglycemia, which is increasing all over the world. From the last two decades, the use of synthetic agents has risen due to their major involvement in curing of chronic diseases including DM. The core skeleton of drugs has been studied such as thiazolidinone, azole, chalcone, pyrrole and pyrimidine along with their derivatives. Diabetics assays have been performed in consideration of different enzymes such as α-glycosidase, α-amylase, and α-galactosidase against acarbose standard drug. The studied moieties were depicted in both models: in vivo as well as in vitro. Molecular docking of the studied compounds as antidiabetic molecules was performed with the help of Auto Dock and molecular operating environment (MOE) software. Amino acid residues Asp349, Arg312, Arg439, Asn241, Val303, Glu304, Phe158, His103, Lys422 and Thr207 that are present on the active sites of diabetic related enzymes showed interactions with ligand molecules. In this review data were organized for the synthesis of heterocyclic compounds through various routes along with their antidiabetic potential, and further studies such as pharmacokinetic and toxicology studies should be executed before going for clinical trials. Diabetes mellitus (DM) is a major metabolic disorder due to hyperglycemia, which is increasing all over the world.![]()
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Affiliation(s)
- Umme Farwa
- Department of Chemistry, University of Gujrat, Gujrat 50700, Pakistan
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Proton-transfer reactions of Re(II)-nitrosyl complexes: Potentiometric studies, DFT and TD-DFT calculations. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Dege N, Özge Ö, Avcı D, Başoğlu A, Sönmez F, Yaman M, Tamer Ö, Atalay Y, Zengin Kurt B. Concentration effects on optical properties, DFT, crystal characterization and α-glucosidase activity studies: Novel Zn(II) complex. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 262:120072. [PMID: 34175761 DOI: 10.1016/j.saa.2021.120072] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 06/02/2021] [Accepted: 06/09/2021] [Indexed: 06/13/2023]
Abstract
A novel Zn(II) complex of 6-ClpicH and picH was synthesized and its structure was determined by XRD technique. The detailed experimental optical susceptibility and band gap, refractive index, linear polarizability, optical and electrical conductivity parameters in various concentrations were investigated by means of the UV-Vis spectroscopic data. The optical band gap, refractive index (n), linear optical susceptibility (χ(1)), third-order nonlinear optical susceptibility (χ(3)), second- and third-order nonlinear optical (β and γ) parameters were examined by using DFT/M06-L and ωB97XD/6-311++G(d,p) levels. The IC50 value of Zn(II) complex against α-glucosidase was also obtained at 0.44 mM. The experimental band gap of the Zn(II) complex at 13, 33, 44 and 94 µM concentrations in ethanol were found to be 4.38, 4.37, 4.35 and 4.28 eV, respectively. The third-order NLO susceptibility χ(3) parameter at 94 µM concentration corresponding to the photon energies of 4.6 and 5.7 eV in the UV-Vis region were observed at 206.6 × 10-13 and 294.3 × 10-13 esu, respectively. Besides, the theoretical χ(3) values were obtained at 50.58 × 10-13 and 20.37 × 10-13 esu by using M06-L level. These results indicate that Zn(II) complex could be an effective third-order NLO candidate material. In brief, the detailed theoretical and experimental structural, spectral and optical properties of the Zn(II) complex were presented comparatively.
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Affiliation(s)
- Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139 Samsun, Turkey
| | - Özgen Özge
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Davut Avcı
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey.
| | - Adil Başoğlu
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey.
| | - Fatih Sönmez
- Sakarya University of Applied Sciences, Pamukova Vocational High School, 54055 Sakarya, Turkey
| | - Mavişe Yaman
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139 Samsun, Turkey
| | - Ömer Tamer
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Yusuf Atalay
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Belma Zengin Kurt
- Bezmialem Vakif University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 34093 Istanbul, Turkey
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DNA interaction, anticancer, cytotoxicity and genotoxicity studies with potential pyrazine-bipyrazole dinuclear µ-oxo bridged Au(III) complexes. Mol Divers 2021; 26:2085-2101. [PMID: 34561737 DOI: 10.1007/s11030-021-10317-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 09/06/2021] [Indexed: 10/20/2022]
Abstract
Pyrazine-bipyrazole-based µ-oxo bridged dinuclear Au(III) complexes were synthesized and characterized by various spectrometric (1H-NMR, 13C (APT) NMR, FT-IR, Mass spectrometry) and analytical techniques (elemental analysis and conductance measurement). The evaluation of DNA binding activity by UV-Vis absorption spectra and viscosity measurement demonstrated that all the compounds intercalate in between the stacks of DNA base pair and the binding constant values were observed in the range of 5.4 × 104-2.17 × 105 M-1. The molecular docking study also supports the intercalation mode of binding. The anti-proliferation activity of complexes on A549 (Lung adenocarcinoma) cells by MTT assay demonstrated IC50 values in the range of 47.46 -298.12 μg/mL. The genotoxicity of compounds was checked by smearing observed in the DNA of S. pombe cell under the influence of complexes. The in vivo cytotoxicity of compounds against brine shrimp demonstrated the LC50 values in the range of 4.59-27.22 μg/mL. The promising results of the Au(III) complexes received significant attention and make them suitable for the new metallodrugs after the detailed mechanistic biological study.
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