1
|
Fedorin DN, Eprintsev AT, Igamberdiev AU. The role of promoter methylation of the genes encoding the enzymes metabolizing di- and tricarboxylic acids in the regulation of plant respiration by light. JOURNAL OF PLANT PHYSIOLOGY 2024; 294:154195. [PMID: 38377939 DOI: 10.1016/j.jplph.2024.154195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 02/04/2024] [Accepted: 02/12/2024] [Indexed: 02/22/2024]
Abstract
We discuss the role of epigenetic changes at the level of promoter methylation of the key enzymes of carbon metabolism in the regulation of respiration by light. While the direct regulation of enzymes via modulation of their activity and post-translational modifications is fast and readily reversible, the role of cytosine methylation is important for providing a prolonged response to environmental changes. In addition, adenine methylation can play a role in the regulation of transcription of genes. The mitochondrial and extramitochondrial forms of several enzymes participating in the tricarboxylic acid cycle and associated reactions are regulated via promoter methylation in opposite ways. The mitochondrial forms of citrate synthase, aconitase, fumarase, NAD-malate dehydrogenase are inhibited while the cytosolic forms of aconitase, fumarase, NAD-malate dehydrogenase, and the peroxisomal form of citrate synthase are activated. It is concluded that promoter methylation represents a universal mechanism of the regulation of activity of respiratory enzymes in plant cells by light. The role of the regulation of the mitochondrial and cytosolic forms of respiratory enzymes in the operation of malate and citrate valves and in controlling the redox state and balancing the energy level of photosynthesizing plant cells is discussed.
Collapse
Affiliation(s)
- Dmitry N Fedorin
- Department of Biochemistry and Cell Physiology, Voronezh State University, 394018, Voronezh, Russia.
| | - Alexander T Eprintsev
- Department of Biochemistry and Cell Physiology, Voronezh State University, 394018, Voronezh, Russia.
| | - Abir U Igamberdiev
- Department of Biology, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
| |
Collapse
|
2
|
Benning UF, Chen L, Watson-Lazowski A, Henry C, Furbank RT, Ghannoum O. Spatial expression patterns of genes encoding sugar sensors in leaves of C4 and C3 grasses. ANNALS OF BOTANY 2023; 131:985-1000. [PMID: 37103118 PMCID: PMC10332396 DOI: 10.1093/aob/mcad057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 04/26/2023] [Indexed: 06/19/2023]
Abstract
BACKGROUND AND AIMS The mechanisms of sugar sensing in grasses remain elusive, especially those using C4 photosynthesis even though a large proportion of the world's agricultural crops utilize this pathway. We addressed this gap by comparing the expression of genes encoding components of sugar sensors in C3 and C4 grasses, with a focus on source tissues of C4 grasses. Given C4 plants evolved into a two-cell carbon fixation system, it was hypothesized this may have also changed how sugars were sensed. METHODS For six C3 and eight C4 grasses, putative sugar sensor genes were identified for target of rapamycin (TOR), SNF1-related kinase 1 (SnRK1), hexokinase (HXK) and those involved in the metabolism of the sugar sensing metabolite trehalose-6-phosphate (T6P) using publicly available RNA deep sequencing data. For several of these grasses, expression was compared in three ways: source (leaf) versus sink (seed), along the gradient of the leaf, and bundle sheath versus mesophyll cells. KEY RESULTS No positive selection of codons associated with the evolution of C4 photosynthesis was identified in sugar sensor proteins here. Expressions of genes encoding sugar sensors were relatively ubiquitous between source and sink tissues as well as along the leaf gradient of both C4 and C3 grasses. Across C4 grasses, SnRK1β1 and TPS1 were preferentially expressed in the mesophyll and bundle sheath cells, respectively. Species-specific differences of gene expression between the two cell types were also apparent. CONCLUSIONS This comprehensive transcriptomic study provides an initial foundation for elucidating sugar-sensing genes within major C4 and C3 crops. This study provides some evidence that C4 and C3 grasses do not differ in how sugars are sensed. While sugar sensor gene expression has a degree of stability along the leaf, there are some contrasts between the mesophyll and bundle sheath cells.
Collapse
Affiliation(s)
- Urs F Benning
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, New South Wales 2753, Australia
| | - Lily Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, New South Wales 2753, Australia
| | | | - Clemence Henry
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, New South Wales 2753, Australia
| | - Robert T Furbank
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, New South Wales 2753, Australia
| |
Collapse
|
3
|
Singh J, Garai S, Das S, Thakur JK, Tripathy BC. Role of C4 photosynthetic enzyme isoforms in C3 plants and their potential applications in improving agronomic traits in crops. PHOTOSYNTHESIS RESEARCH 2022; 154:233-258. [PMID: 36309625 DOI: 10.1007/s11120-022-00978-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
As compared to C3, C4 plants have higher photosynthetic rates and better tolerance to high temperature and drought. These traits are highly beneficial in the current scenario of global warming. Interestingly, all the genes of the C4 photosynthetic pathway are present in C3 plants, although they are involved in diverse non-photosynthetic functions. Non-photosynthetic isoforms of carbonic anhydrase (CA), phosphoenolpyruvate carboxylase (PEPC), malate dehydrogenase (MDH), the decarboxylating enzymes NAD/NADP-malic enzyme (NAD/NADP-ME), and phosphoenolpyruvate carboxykinase (PEPCK), and finally pyruvate orthophosphate dikinase (PPDK) catalyze reactions that are essential for major plant metabolism pathways, such as the tricarboxylic acid (TCA) cycle, maintenance of cellular pH, uptake of nutrients and their assimilation. Consistent with this view differential expression pattern of these non-photosynthetic C3 isoforms has been observed in different tissues across the plant developmental stages, such as germination, grain filling, and leaf senescence. Also abundance of these C3 isoforms is increased considerably in response to environmental fluctuations particularly during abiotic stress. Here we review the vital roles played by C3 isoforms of C4 enzymes and the probable mechanisms by which they help plants in acclimation to adverse growth conditions. Further, their potential applications to increase the agronomic trait value of C3 crops is discussed.
Collapse
Affiliation(s)
- Jitender Singh
- National Institute of Plant Genome Research, New Delhi, 110067, India.
| | - Sampurna Garai
- International Centre for Genetic Engineering and Biotechnology, New Delhi, 110067, India
| | - Shubhashis Das
- National Institute of Plant Genome Research, New Delhi, 110067, India
| | - Jitendra Kumar Thakur
- National Institute of Plant Genome Research, New Delhi, 110067, India.
- International Centre for Genetic Engineering and Biotechnology, New Delhi, 110067, India.
| | | |
Collapse
|
4
|
Israel WK, Watson-Lazowski A, Chen ZH, Ghannoum O. High intrinsic water use efficiency is underpinned by high stomatal aperture and guard cell potassium flux in C3 and C4 grasses grown at glacial CO2 and low light. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1546-1565. [PMID: 34718533 DOI: 10.1093/jxb/erab477] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 10/26/2021] [Indexed: 05/15/2023]
Abstract
We compared how stomatal morphology and physiology control intrinsic leaf water use efficiency (iWUE) in two C3 and six C4 grasses grown at ambient (400 µmol mol-1) or glacial CO2 (180 µmol mol-1) and high (1000 µmol m-2 s-1) or low light intensity (200 µmol m-2 s-1). C4 grasses tended to have higher iWUE and CO2 assimilation rates, and lower stomatal conductance (gs), operational stomatal aperture (aop), and guard cell K+ influx rate relative to C3 grasses, while stomatal size (SS) and stomatal density (SD) did not vary according to the photosynthetic type. Overall, iWUE and gs depended most on aop and density of open stomata. In turn, aop correlated with K+ influx, stomatal opening speed on transition to high light, and SS. Species with higher SD had smaller and faster-opening stomata. Although C4 grasses operated with lower gs and aop at ambient CO2, they showed a greater potential to open stomata relative to maximal stomatal conductance (gmax), indicating heightened stomatal sensitivity and control. We uncovered promising links between aop, gs, iWUE, and K+ influx among C4 grasses, and differential K+ influx responses of C4 guard cells to low light, revealing molecular targets for improving iWUE in C4 crops.
Collapse
Affiliation(s)
- Walter Krystler Israel
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| | - Alexander Watson-Lazowski
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- School of Science, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| |
Collapse
|
5
|
Fan Y, Asao S, Furbank RT, von Caemmerer S, Day DA, Tcherkez G, Sage TL, Sage RF, Atkin OK. The crucial roles of mitochondria in supporting C 4 photosynthesis. THE NEW PHYTOLOGIST 2022; 233:1083-1096. [PMID: 34669188 DOI: 10.1111/nph.17818] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 10/18/2021] [Indexed: 06/13/2023]
Abstract
C4 photosynthesis involves a series of biochemical and anatomical traits that significantly improve plant productivity under conditions that reduce the efficiency of C3 photosynthesis. We explore how evolution of the three classical biochemical types of C4 photosynthesis (NADP-ME, NAD-ME and PCK types) has affected the functions and properties of mitochondria. Mitochondria in C4 NAD-ME and PCK types play a direct role in decarboxylation of metabolites for C4 photosynthesis. Mitochondria in C4 PCK type also provide ATP for C4 metabolism, although this role for ATP provision is not seen in NAD-ME type. Such involvement has increased mitochondrial abundance/size and associated enzymatic capacity, led to changes in mitochondrial location and ultrastructure, and altered the role of mitochondria in cellular carbon metabolism in the NAD-ME and PCK types. By contrast, these changes in mitochondrial properties are absent in the C4 NADP-ME type and C3 leaves, where mitochondria play no direct role in photosynthesis. From an eco-physiological perspective, rates of leaf respiration in darkness vary considerably among C4 species but does not differ systematically among the three C4 types. This review outlines further mitochondrial research in key areas central to the engineering of the C4 pathway into C3 plants and to the understanding of variation in rates of C4 dark respiration.
Collapse
Affiliation(s)
- Yuzhen Fan
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Shinichi Asao
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Robert T Furbank
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Susanne von Caemmerer
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - David A Day
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA, 5001, Australia
| | - Guillaume Tcherkez
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Institut de Recherche en Horticulture et Semences, INRA and University of Angers, Beaucouzé, 49070, France
| | - Tammy L Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
| | - Rowan F Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
| | - Owen K Atkin
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| |
Collapse
|
6
|
Calace P, Tonetti T, Margarit E, Figueroa CM, Lobertti C, Andreo CS, Gerrard Wheeler MC, Saigo M. The C4 cycle and beyond: diverse metabolic adaptations accompany dual-cell photosynthetic functions in Setaria. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:7876-7890. [PMID: 34402880 DOI: 10.1093/jxb/erab381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
C4 photosynthesis is typically characterized by the spatial compartmentalization of the photosynthetic reactions into mesophyll (M) and bundle sheath (BS) cells. Initial carbon fixation within M cells gives rise to C4 acids, which are transported to the BS cells. There, C4 acids are decarboxylated so that the resulting CO2 is incorporated into the Calvin cycle. This work is focused on the study of Setaria viridis, a C4 model plant, closely related to several major feed and bioenergy grasses. First, we performed the heterologous expression and biochemical characterization of Setaria isoforms for chloroplastic NADP-malic enzyme (NADP-ME) and mitochondrial NAD-malic enzyme (NAD-ME). The kinetic parameters obtained agree with a major role for NADP-ME in the decarboxylation of the C4 acid malate in the chloroplasts of BS cells. In addition, mitochondria-located NAD-ME showed regulatory properties that could be important in the context of the operation of the C4 carbon shuttle. Secondly, we compared the proteomes of M and BS compartments and found 825 differentially accumulated proteins that could support different metabolic scenarios. Most interestingly, we found evidence of metabolic strategies to insulate the C4 core avoiding the leakage of intermediates by either up-regulation or down-regulation of chloroplastic, mitochondrial, and peroxisomal proteins. Overall, the results presented in this work provide novel data concerning the complexity of C4 metabolism, uncovering future lines of research that will undoubtedly contribute to the expansion of knowledge on this topic.
Collapse
Affiliation(s)
- Paula Calace
- Grupo de Metabolismo del Carbono y Producción Vegetal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Tomás Tonetti
- Instituto de Agrobiotecnología del Litoral (IAL-CONICET), Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina
| | - Ezequiel Margarit
- Grupo de Calidad de Frutos Cítricos, Bayas y Mejoramiento Forestal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Carlos M Figueroa
- Instituto de Agrobiotecnología del Litoral (IAL-CONICET), Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, Santa Fe, Argentina
| | - Carlos Lobertti
- Grupo de Metabolismo del Carbono y Producción Vegetal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
- Laboratorio de Patogénesis Bacteriana, Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Centro Científico Tecnológico Rosario, Rosario, Argentina
| | - Carlos S Andreo
- Grupo de Metabolismo del Carbono y Producción Vegetal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Mariel C Gerrard Wheeler
- Grupo de Metabolismo del Carbono y Producción Vegetal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| | - Mariana Saigo
- Grupo de Metabolismo del Carbono y Producción Vegetal, Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina
| |
Collapse
|
7
|
Fan Z, Kong M, Ma L, Duan S, Gao N, Xuqing C, Yongsheng T. Transcriptome analysis of a novel maize bsd C4 mutant using RNA-seq. PLANT SIGNALING & BEHAVIOR 2020; 15:1777374. [PMID: 32538297 PMCID: PMC8570717 DOI: 10.1080/15592324.2020.1777374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Revised: 05/22/2020] [Accepted: 05/23/2020] [Indexed: 06/11/2023]
Abstract
The C4 plants like maize are at an advantage because they exhibit higher carbon conversion efficiency than C3 during photosynthesis. Using the evaluation of photosynthetic phenotypes and subcellular structure, and high-quality transcriptome analysis for four types of leaves from a bundle sheath defective maize mutant (bsd) and 501 wild line, the key target genes, important transcription factors, and specific pathways were obtained, which may regulate the C-concentrating mechanisms and antioxidant protection of the photosynthetic system, gibberellin signaling, ribosome editing, glycolysis, and chlorophyll biosynthesis. Based on these target genes, a novel network with photosynthetic transformation efficiency with oxidative decarboxylation and ribosome regulation was filtered innovatively by Cytoscape, which adds to our understanding for high-efficiency C-fixation and its genetic improvement in C3 and C4 plants.
Collapse
Affiliation(s)
- Ziyang Fan
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Mengsi Kong
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Liangliang Ma
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Shiming Duan
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Nan Gao
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| | - Chen Xuqing
- Beijing Agro-Biotechnology Research Center, Beijing Academy of Agricultural and Forestry Science, Beijing, China
| | - Tao Yongsheng
- North China Key Laboratory for Crop Germplasm Resource of Education Ministry, Hebei Agricultural University, Baoding, China
| |
Collapse
|
8
|
Shi W, Yue L, Guo J, Wang J, Yuan X, Dong S, Guo J, Guo P. Identification and evolution of C 4 photosynthetic pathway genes in plants. BMC PLANT BIOLOGY 2020; 20:132. [PMID: 32228460 PMCID: PMC7106689 DOI: 10.1186/s12870-020-02339-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 03/11/2020] [Indexed: 05/03/2023]
Abstract
BACKGROUND NADP-malic enzyme (NAPD-ME), and pyruvate orthophosphate dikinase (PPDK) are important enzymes that participate in C4 photosynthesis. However, the evolutionary history and forces driving evolution of these genes in C4 plants are not completely understood. RESULTS We identified 162 NADP-ME and 35 PPDK genes in 25 species and constructed respective phylogenetic trees. We classified NADP-ME genes into four branches, A1, A2, B1 and B2, whereas PPDK was classified into two branches in which monocots were in branch I and dicots were in branch II. Analyses of selective pressure on the NAPD-ME and PPDK gene families identified four positively selected sites, including 94H and 196H in the a5 branch of NADP-ME, and 95A and 559E in the e branch of PPDK at posterior probability thresholds of 95%. The positively selected sites were located in the helix and sheet regions. Quantitative RT-PCR (qRT-PCR) analyses revealed that expression levels of 6 NADP-ME and 2 PPDK genes from foxtail millet were up-regulated after exposure to light. CONCLUSION This study revealed that positively selected sites of NADP-ME and PPDK evolution in C4 plants. It provides information on the classification and positive selection of plant NADP-ME and PPDK genes, and the results should be useful in further research on the evolutionary history of C4 plants.
Collapse
Affiliation(s)
- Weiping Shi
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Linqi Yue
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Jiahui Guo
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Jianming Wang
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Xiangyang Yuan
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Shuqi Dong
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Jie Guo
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China.
| | - Pingyi Guo
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China.
| |
Collapse
|
9
|
Watson-Lazowski A, Papanicolaou A, Koller F, Ghannoum O. The transcriptomic responses of C 4 grasses to subambient CO 2 and low light are largely species specific and only refined by photosynthetic subtype. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 101:1170-1184. [PMID: 31651067 DOI: 10.1111/tpj.14583] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 09/23/2019] [Accepted: 10/03/2019] [Indexed: 06/10/2023]
Abstract
Three subtypes of C4 photosynthesis exist (NADP-ME, NAD-ME and PEPCK), each known to be beneficial under specific environmental conditions. However, the influence of photosynthetic subtype on transcriptomic plasticity, as well as the genes underpinning this variability, remain largely unknown. Here, we comprehensively investigate the responses of six C4 grass species, spanning all three C4 subtypes, to two controlled environmental stresses: low light (200 µmol m-2 sec-1 ) and glacial CO2 (subambient; 180 ppm). We identify a susceptibility within NADP-ME species to glacial CO2 . Notably, although glacial CO2 phenotypes could be tied to C4 subtype, biochemical and transcriptomic responses to glacial CO2 were largely species specific. Nevertheless, we were able to identify subtype specific subsets of significantly differentially expressed transcripts which link resource acquisition and allocation to NADP-ME species susceptibility to glacial CO2 . Here, low light phenotypes were comparable across species with no clear subtype response, while again, transcriptomic responses to low light were largely species specific. However, numerous functional similarities were noted within the transcriptomic responses to low light, suggesting these responses are functionally relatively conserved. Additionally, PEPCK species exhibited heightened regulation of transcripts related to metabolism in response to both stresses, likely tied to their C4 metabolic pathway. These results highlight the influence that both species and subtype can have on plant responses to abiotic stress, building on our mechanistic understanding of acclimation within C4 grasses and highlighting avenues for future crop improvements.
Collapse
Affiliation(s)
- Alexander Watson-Lazowski
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Canberra, Australia
| | - Alexie Papanicolaou
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Canberra, Australia
| | - Fiona Koller
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Canberra, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Canberra, Australia
| |
Collapse
|
10
|
Hernández-Prieto MA, Foster C, Watson-Lazowski A, Ghannoum O, Chen M. Comparative analysis of thylakoid protein complexes in the mesophyll and bundle sheath cells from C 3 , C 4 and C 3 -C 4 Paniceae grasses. PHYSIOLOGIA PLANTARUM 2019; 166:134-147. [PMID: 30838662 DOI: 10.1111/ppl.12956] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 03/01/2019] [Indexed: 06/09/2023]
Abstract
To better understand the coordination between dark and light reactions during the transition from C3 to C4 photosynthesis, we optimized a method for separating thylakoids from mesophyll (MC) and bundle sheath cells (BSCs) across different plant species. We grew six Paniceae grasses including representatives from the C3 , C3 -C4 and C4 photosynthetic types and all three C4 biochemical subtypes [nicotinamide adenine dinucleotide phosphate-dependent malic enzyme (NADP-ME), nicotinamide adenine dinucleotide-dependent malic enzyme (NAD-ME) and phosphoenolpyruvate carboxykinase (PEPCK)] in addition to Zea mays under control conditions (1000 μmol quanta m-2 s-1 and 400 ppm of CO2 ). Proteomics analysis of thylakoids under native conditions, using blue native polyacrylamide gel electrophoresis followed by liquid chromatography-mass spectrometry (LC-MS), demonstrated the presence of subunits of all light-reaction-related complexes in all species and cell types. C4 NADP-ME species showed a higher photosystems I/II ratio and a clear accumulation of the NADH dehydrogenase-like complexes in BSCs, while Cytb6 f was more abundant in BSCs of C4 NAD-ME species. The C4 PEPCK species showed no clear differences between cell types. Our study presents, for the first time, a good separation between BSC and MC for a C3 -C4 intermediate grass which did not show noticeable differences in the distribution of the thylakoid complexes. For the NADP-ME species Panicum antidotale, growth at glacial CO2 (180 ppm of CO2 ) had no effect on the distribution of the light-reaction complexes, while growth at low light (200 μmol quanta m-2 s-1 ) promoted the accumulation of light-harvesting proteins in both cell types. These results add to our understanding of thylakoid distribution across photosynthetic types and subtypes, and introduce thylakoid distribution between the MC and BSC of a C3 -C4 intermediate species.
Collapse
Affiliation(s)
- Miguel A Hernández-Prieto
- ARC Centre of Excellence for Translational Photosynthesis, School of Life and Environmental Sciences, The University of Sydney, Sydney, 2006, Australia
| | - Christie Foster
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Alexander Watson-Lazowski
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Oula Ghannoum
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Sydney, 2751, Australia
| | - Min Chen
- ARC Centre of Excellence for Translational Photosynthesis, School of Life and Environmental Sciences, The University of Sydney, Sydney, 2006, Australia
| |
Collapse
|