Molecular recognition phenomenon in aromatic compounds

Synthesis of a Pyridone-Based Phthalimide Fleximer and Its Characterization and Supramolecular Property Evaluation

In this study, a novel pyridone-based phthalimide fleximer, that is, ethyl 5-cyano-6-(3-(1,3-dioxoisoindolin-2-yl)propoxy)-4-(3-methoxyphenyl)-2-methylnicotinate, was synthesized, and its structure was established by the single-crystal X-ray diffraction method. The supramolecular self-assembly of the titled compound through noncovalent interactions was then investigated thoroughly. The titled compound crystallized with two symmetry-independent molecules (A and B, Z' = 2). In agreement with experimental observations, our density functional theory calculations also showed that the titled compound has a flexible motif and can occur in various conformations, including molecules A and B. The investigation of the supramolecular framework revealed that the molecules are notably bound by the nonclassical C-H···O and C-H···N hydrogen bonds and C-H···π interactions. Hirshfeld surface analysis was carried out to quantify the various intermolecular interactions. The dual anti-inflammatory activity of the tilted compound was also explored by molecular docking in the active sites of 5-LOX and COX-2 receptors, which revealed good binding affinities of -9.0 and -8.6 kcal/mol, respectively.

Controlling the Fluorescence Response of PET Sensors via the Metal-Ion π-Contacting Ability of the Fluorophore: Coumarin, a Weaker π Contacter

The π-contact hypothesis, that quenching of the fluorescence of complexes of photoinduced electron transfer sensors with heavy diamagnetic metal ions may be caused by π contacts between the metal ion and the fluorophore of the sensor, is examined with a study of the fluorescent properties of the sensor 4-[[bis(2-pyridinylmethyl)amino]methyl]-6,7-dimethoxy-1-benzopyran-2-one (cdpa) and the structures of its complexes with some metal ions. The coumarin-type fluorophore of cdpa is a weaker π-contact former than the anthracenyl fluorophore of the analogue adpa (Inorg. Chem. 2014, 53, 9014): only Ag(I), the strongest π contact former, quenches the fluorescence of cdpa, apart from paramagnetic Cu(II) and Ni(II), which quench fluorescence by a redox mechanism not requiring π contacts. The structures of [Ag(cdpa)NO3] (1), [Pb(cdpa)(NO3)2] (2), [Zn(cdpa)(NO3)2] (3), [Cd(cdpa)Cl2]2 (4), [Cd(cdpa)2H2O](NO3)2 (5), and [Hg(cdpa)2H2O](NO3)2 (6) are reported. Structure 1 shows that Ag(I) is the only metal ion studied that forms π contacts with the fluorophore of cdpa in the solid state: Ag···C η(2) π contacts of 3.083 and 3.095 Å, in line with quenching of the fluorescence of the Ag(I)(cdpa) complex. In contrast, Pb(II), Zn(II), and Cd(II) show chelation-enhanced fluorescence in their cdpa complexes, and the structures of 2-4 show that the fluorophore of cdpa in each case forms no π contacts. By contrast, the adpa complexes of Pb(II) and Cd(II) show π contacts with its more strongly π-contacting fluorophore (Inorg. Chem. 2014, 53, 9014). The structures of 5 and 6 show bis-complexes of cdpa: the coordination geometries of Cd(II) and Hg(II) are discussed in relation to the number of covalently bound donor atoms present. The preferred hapticity of π-contacted metal ions is evaluated from the literature structures, suggesting that d(10) metal ions such as Ag(I) and Hg(II), and tetragonally distorted Cu(II) and Pd(II), prefer η(1) and η(2) π contacts, while more ionically bound metal ions such as K(I), Ba(II), and La(III), as well as d(10)s(2) metal ions such as Tl(I), Pb(II), and Bi(III), prefer η(6) contacts.