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Hamarawf RF. Antibacterial, antibiofilm, and antioxidant activities of two novel metal-organic frameworks (MOFs) based on 4,6-diamino-2-pyrimidinethiol with Zn and Co metal ions as coordination polymers. RSC Adv 2024; 14:9080-9098. [PMID: 38500614 PMCID: PMC10945374 DOI: 10.1039/d4ra00545g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Accepted: 03/04/2024] [Indexed: 03/20/2024] Open
Abstract
In the present era, the increase in free radical species (FRs) and multidrug-resistant (MDR) bacteria represents a major worldwide concern for public health. Biofilm development and the overuse and misuse of antibiotics could lead to the adaptation of bacteria to antimicrobial agents. Consequently, finding novel multifunctional species with antibacterial, antioxidant, and antibiofilm properties has become crucial in the fight against challenging bacterial infections and chronic inflammatory conditions. Metal-organic frameworks (MOFs) with zinc and cobalt metal centers are widely utilized in biological and environmental remediation owing to their versatility. In this study, multifunctional Zn-MOFs and Co-MOFs were successfully synthesized with zinc and cobalt as metal centers and 4,6-diamino-2-pyrimidinethiol as an organic linker using a hydrothermal technique. Numerous characterization techniques were used to fully examine the MOF structure, functionality, chemical makeup, crystalline structure, surface appearance, thermal behavior, and magnetic characteristics; the techniques included XPS, PXRD, FTIR, FESEM, EDX, UV-visible, BET, BJH, TGA/DTG, DSC, and magnetic susceptibility measurement. The antioxidant, antibacterial, and antibiofilm activities of the MOFs were examined, and they demonstrated potent activity in each of these aspects. The proposed mechanisms of antibacterial activity suggest that bacterial cell death results from multiple toxic effects, including electrostatic interaction and lipid peroxidation, when MOFs are attached to bacteria, leading to the formation of reactive oxygen species (ROSs). Zn-MOFs exhibit high antibacterial and antibiofilm efficacy owing to their large surface-to-volume ratio and porous nature, while Co-MOFs exhibit high antioxidant capacity owing to their redox properties.
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Affiliation(s)
- Rebaz F Hamarawf
- Department of Chemistry, College of Science, University of Sulaimani Kirkuk Road Sulaymaniyah City 46001 Kurdistan Region Iraq
- Department of Medical Laboratory Science, Komar University of Science and Technology (KUST) Qliasan St Sulaymaniyah City 46002 Kurdistan Region Iraq
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Dubskikh VA, Kolosov AA, Lysova AA, Samsonenko DG, Lavrov AN, Kovalenko KA, Dybtsev DN, Fedin VP. A Series of Metal-Organic Frameworks with 2,2'-Bipyridyl Derivatives: Synthesis vs. Structure Relationships, Adsorption, and Magnetic Studies. Molecules 2023; 28:molecules28052139. [PMID: 36903384 PMCID: PMC10004071 DOI: 10.3390/molecules28052139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 02/16/2023] [Accepted: 02/22/2023] [Indexed: 03/03/2023] Open
Abstract
Five new metal-organic frameworks based on Mn(II) and 2,2'-bithiophen-5,5'-dicarboxylate (btdc2-) with various chelating N-donor ligands (2,2'-bipyridyl = bpy; 5,5'-dimethyl-2,2'-bipyridyl = 5,5'-dmbpy; 4,4'-dimethyl-2,2'-bipyridyl = 4,4'-dmbpy) [Mn3(btdc)3(bpy)2]·4DMF, 1; [Mn3(btdc)3(5,5'-dmbpy)2]·5DMF, 2; [Mn(btdc)(4,4;-dmbpy)], 3; [Mn2(btdc)2(bpy)(dmf)]·0.5DMF, 4; [Mn2(btdc)2(5,5'-dmbpy)(dmf)]·DMF, 5 (dmf, DMF = N,N-dimethylformamide) have been synthesized, and their crystal structure has been established using single-crystal X-ray diffraction analysis (XRD). The chemical and phase purities of Compounds 1-3 have been confirmed via powder X-ray diffraction, thermogravimetric, and chemical analyses as well as IR spectroscopy. The influence of the bulkiness of the chelating N-donor ligand on the dimensionality and structure of the coordination polymer has been analyzed, and the decrease in the framework dimensionality, as well as the secondary building unit's nuclearity and connectivity, has been observed for bulkier ligands. For three-dimensional (3D) coordination polymer 1, the textural and gas adsorption properties have been studied, revealing noticeable ideal adsorbed solution theory (IAST) CO2/N2 and CO2/CO selectivity factors (31.0 at 273 K and 19.1 at 298 K and 25.7 at 273 K and 17.0 at 298 K, respectively, for the equimolar composition and the total pressure of 1 bar). Moreover, significant adsorption selectivity for binary C2-C1 hydrocarbons mixtures (33.4 and 24.9 for C2H6/CH4, 24.8 and 17.7 for C2H4/CH4, 29.3 and 19.1 for C2H2/CH4 at 273 K and 298 K, respectively, for the equimolar composition and the total pressure of 1 bar) has been observed, making it possible to separate on 1 natural, shale, and associated petroleum gas into valuable individual components. The ability of Compound 1 to separate benzene and cyclohexane in a vapor phase has also been analyzed based on the adsorption isotherms of individual components measured at 298 K. The preferable adsorption of C6H6 over C6H12 by 1 at high vapor pressures (VB/VCH = 1.36) can be explained by the existence of multiple van der Waals interactions between guest benzene molecules and the metal-organic host revealed by the XRD analysis of 1 immersed in pure benzene for several days (1≅2C6H6). Interestingly, at low vapor pressures, an inversed behavior of 1 with preferable adsorption of C6H12 over C6H6 (KCH/KB = 6.33) was observed; this is a very rare phenomenon. Moreover, magnetic properties (the temperature-dependent molar magnetic susceptibility, χp(T) and effective magnetic moments, μeff(T), as well as the field-dependent magnetization, M(H)) have been studied for Compounds 1-3, revealing paramagnetic behavior consistent with their crystal structure.
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Affiliation(s)
- Vadim A. Dubskikh
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Aleksei A. Kolosov
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
- Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090, Russia
| | - Anna A. Lysova
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
- Correspondence: (A.A.L.); (D.N.D.)
| | - Denis G. Samsonenko
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Alexander N. Lavrov
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Konstantin A. Kovalenko
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
| | - Danil N. Dybtsev
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
- Correspondence: (A.A.L.); (D.N.D.)
| | - Vladimir P. Fedin
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, Russia
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Kniazeva MK, Ovsyannikov AS, Islamov DR, Samigullina AI, Gubaidullin AT, Dorovatovskii PV, Solovieva SE, Antipin IS, FERLAY S. Crystalline Assembly and Solvent‐induced Solid‐state Transformation of 1D Zigzag Chains Based on Sulfonylcalix[4]arene Trinuclear Co (II) and Zn (II) Clusters. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202200464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Mariia K. Kniazeva
- Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center of Russian Academy of Sciences: Institut organicheskoj i fizicheskoj khimii imeni A E Arbuzova KazNC RAN - RUSSIAN FEDERATION
| | - Alexander S. Ovsyannikov
- Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center of Russian Academy of Sciences: Institut organicheskoj i fizicheskoj khimii imeni A E Arbuzova KazNC RAN - RUSSIAN FEDERATION
| | - Daut R. Islamov
- Laboratory for structural analysis of biomacromolecules , FRC Kazan scientific center - RUSSIAN FEDERATION
| | - Aida I. Samigullina
- Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center of Russian Academy of Sciences: Institut organicheskoj i fizicheskoj khimii imeni A E Arbuzova KazNC RAN - RUSSIAN FEDERATION
| | - Aidar T. Gubaidullin
- Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center of Russian Academy of Sciences: Institut organicheskoj i fizicheskoj khimii imeni A E Arbuzova KazNC RAN - RUSSIAN FEDERATION
| | - Pavel V. Dorovatovskii
- Kurchatov Institute: Nacional'nyj issledovatel'skij centr Kurcatovskij institut - RUSSIAN FEDERATION
| | - Svetlana E. Solovieva
- Kazan Federal University: Kazanskij Privolzskij federal'nyj universitet - RUSSIAN FEDERATION
| | - Igor S. Antipin
- Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center of Russian Academy of Sciences: Institut organicheskoj i fizicheskoj khimii imeni A E Arbuzova KazNC RAN - RUSSIAN FEDERATION
| | - Sylvie FERLAY
- University of Strasbourg Faculty of Chemistry 4 rue Blaise Pascal 67000 STRASBOURG FRANCE
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Rajakumar K, Sharutin VV, Adonin SA, Zherebtsov DA, Sakhapov IF, Islamov DR, Prabunatan P, Vershinin MA, Naifert SA, Polozov MA. DI- AND TETRAIODOXYLENES: STRUCTURE AND FEATURES OF NON-COVALENT INTERACTIONS IN A SOLID STATE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622040138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Demakov PA, Fedin VP. Layered trans-1,4-Cyclohexanedicarboxylates of Divalent Metals: Synthesis, Crystal Structures, and Thermal Properties. RUSS J COORD CHEM+ 2022. [DOI: 10.1134/s1070328422050049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Timofeeva MN, Lukoyanov IA, Panchenko VN, Jhung SH. Particle size effect on the catalytic properties of zeolitic imidazolate frameworks. Russ Chem Bull 2022. [DOI: 10.1007/s11172-022-3458-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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7
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Dharma AD, Chen C, Macreadie LK. Structural Investigation into Magnesium Based MOFs Derived from Aliphatic Linkers. Aust J Chem 2022. [DOI: 10.1071/ch21208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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8
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Veselovsky VV, Lozanova AV, Isaeva VI, Chernyshev VV. Synthesis and the crystal structure of a new chiral metal-organic coordination polymer based on l-proline-substituted 2-aminobenzene-1,4-dicarboxylic acid derivative. Russ Chem Bull 2021. [DOI: 10.1007/s11172-021-3161-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Dubskikh VA, Lysova AA, Samsonenko DG, Lavrov AN, Kovalenko KA, Dybtsev DN, Fedin VP. 3D Metal-Organic Frameworks Based on Co(II) and Bithiophendicarboxylate: Synthesis, Crystal Structures, Gas Adsorption, and Magnetic Properties. Molecules 2021; 26:molecules26051269. [PMID: 33652868 PMCID: PMC7956319 DOI: 10.3390/molecules26051269] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 02/17/2021] [Accepted: 02/23/2021] [Indexed: 12/18/2022] Open
Abstract
Three new 3D metal-organic porous frameworks based on Co(II) and 2,2′-bithiophen-5,5′-dicarboxylate (btdc2−) [Co3(btdc)3(bpy)2]·4DMF, 1; [Co3(btdc)3(pz)(dmf)2]·4DMF·1.5H2O, 2; [Co3(btdc)3(dmf)4]∙2DMF∙2H2O, 3 (bpy = 2,2′-bipyridyl, pz = pyrazine, dmf = N,N-dimethylformamide) were synthesized and structurally characterized. All compounds share the same trinuclear carboxylate building units {Co3(RCOO)6}, connected either by btdc2– ligands (1, 3) or by both btdc2– and pz bridging ligands (2). The permanent porosity of 1 was confirmed by N2, O2, CO, CO2, CH4 adsorption measurements at various temperatures (77 K, 273 K, 298 K), resulted in BET surface area 667 m2⋅g−1 and promising gas separation performance with selectivity factors up to 35.7 for CO2/N2, 45.4 for CO2/O2, 20.8 for CO2/CO, and 4.8 for CO2/CH4. The molar magnetic susceptibilities χp(T) were measured for 1 and 2 in the temperature range 1.77–330 K at magnetic fields up to 10 kOe. The room-temperature values of the effective magnetic moments for compounds 1 and 2 are μeff (300 K) ≈ 4.93 μB. The obtained results confirm the mainly paramagnetic nature of both compounds with some antiferromagnetic interactions at low-temperatures T < 20 K in 2 between the Co(II) cations separated by short pz linkers. Similar conclusions were also derived from the field-depending magnetization data of 1 and 2.
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Kuznetsova A, Matveevskaya V, Pavlov D, Yakunenkov A, Potapov A. Coordination Polymers Based on Highly Emissive Ligands: Synthesis and Functional Properties. MATERIALS (BASEL, SWITZERLAND) 2020; 13:E2699. [PMID: 32545737 PMCID: PMC7345804 DOI: 10.3390/ma13122699] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 06/03/2020] [Accepted: 06/10/2020] [Indexed: 12/13/2022]
Abstract
Coordination polymers are constructed from metal ions and bridging ligands, linking them into solid-state structures extending in one (1D), two (2D) or three dimensions (3D). Two- and three-dimensional coordination polymers with potential voids are often referred to as metal-organic frameworks (MOFs) or porous coordination polymers. Luminescence is an important property of coordination polymers, often playing a key role in their applications. Photophysical properties of the coordination polymers can be associated with intraligand, metal-centered, guest-centered, metal-to-ligand and ligand-to-metal electron transitions. In recent years, a rapid growth of publications devoted to luminescent or fluorescent coordination polymers can be observed. In this review the use of fluorescent ligands, namely, 4,4'-stilbenedicarboxylic acid, 1,3,4-oxadiazole, thiazole, 2,1,3-benzothiadiazole, terpyridine and carbazole derivatives, naphthalene diimides, 4,4',4''-nitrilotribenzoic acid, ruthenium(II) and iridium(III) complexes, boron-dipyrromethene (BODIPY) derivatives, porphyrins, for the construction of coordination polymers are surveyed. Applications of such coordination polymers based on their photophysical properties will be discussed. The review covers the literature published before April 2020.
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Affiliation(s)
- Anastasia Kuznetsova
- Kizhner Research Center, National Research Tomsk Polytechnic University, 30 Lenin Ave., 634050 Tomsk, Russia; (A.K.); (V.M.); (D.P.); (A.Y.)
| | - Vladislava Matveevskaya
- Kizhner Research Center, National Research Tomsk Polytechnic University, 30 Lenin Ave., 634050 Tomsk, Russia; (A.K.); (V.M.); (D.P.); (A.Y.)
| | - Dmitry Pavlov
- Kizhner Research Center, National Research Tomsk Polytechnic University, 30 Lenin Ave., 634050 Tomsk, Russia; (A.K.); (V.M.); (D.P.); (A.Y.)
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Andrei Yakunenkov
- Kizhner Research Center, National Research Tomsk Polytechnic University, 30 Lenin Ave., 634050 Tomsk, Russia; (A.K.); (V.M.); (D.P.); (A.Y.)
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Andrei Potapov
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia
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Dubskikh VA, Lysova AA, Samsonenko DG, Dybtsev DN, Fedin VP. Topological polymorphism and temperature-driven topotactic transitions of metal–organic coordination polymers. CrystEngComm 2020. [DOI: 10.1039/d0ce01045f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A facile crystal-to-crystal solid-state phase transition between a low-temperature phase and a high temperature phase changes the MOF topology and involves a significant rearrangement of bulky organic ligands.
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Affiliation(s)
- Vadim A. Dubskikh
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russia
| | - Anna A. Lysova
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Denis G. Samsonenko
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Danil N. Dybtsev
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Vladimir P. Fedin
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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