1
|
Wijeratne GB, Bhadra M, Siegler MA, Karlin KD. Copper(I) Complex Mediated Nitric Oxide Reductive Coupling: Ligand Hydrogen Bonding Derived Proton Transfer Promotes N 2O (g) Release. J Am Chem Soc 2019; 141:17962-17967. [PMID: 31621325 DOI: 10.1021/jacs.9b07286] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
A cuprous chelate bearing a secondary sphere hydrogen bonding functionality, [(PV-tmpa)CuI]+, transforms •NO(g) to N2O(g) in high-yields in methanol. Ligand derived proton transfer facilitates N-O bond cleavage of a putative hyponitrite intermediate releasing N2O(g), underscoring the crucial balance between H-bonding capabilities and acidities in (bio)chemical •NO(g) coupling systems.
Collapse
Affiliation(s)
- Gayan B Wijeratne
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Mayukh Bhadra
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Maxime A Siegler
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Kenneth D Karlin
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| |
Collapse
|
2
|
Saha S, Takayanagi M, Matsumoto K, Sankaran SK, Tanaka Y, Koga N, Nagaoka M. Probing the Most Stable Isomer of Zirconium Bis(phenoxy-imine) Cation: A Computational Investigation. J Phys Chem A 2018; 122:2198-2208. [PMID: 29394059 DOI: 10.1021/acs.jpca.7b10999] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The possibility of coexistence of multiple isomers for zirconium bis(phenoxy-imine) catalyst has been systematically studied by computational approaches. The energetics among the five different isomers of neutral Zr-catalyst have been assessed quantum mechanically. The results suggest that isomer cis-N/trans-O/cis-Me is the most stable among the five isomers in accordance with the general observations of these kinds of phenoxy-imine catalyst. However, for the polymerization reaction, the active species is known to be the cationic form of the Zr-catalyst. The Zr-cation can exist in three different isomers, viz., cis-N/trans-O (A), cis-N/cis-O (B), and trans-N/cis-O (C), and the presence of flexible ligands makes the modeling considerably challenging to determine the most preferable isomers. For the efficient modeling, altogether 80 different structures for each of the three cationic isomers have been generated by using molecular dynamics simulations, and subsequently, the quantum mechanical optimization of these structures has been performed to obtain the most preferable conformation for each isomer. The existing probability derived from the obtained free energy values suggests that isomer C is comparable with isomer A. Even more, isomer A of the cation can be present in two different conformations, where the orientation of side groups is altered at the imine nitrogen atoms. The transition state calculations also confirm that the Zr-cation can exist as a mixture of three structures, "up-down" and "down-down" orientations of the isomers A along with isomer C's "up-up" orientation. However, by varying the substituents at imine nitrogen atoms, one could modulate multimodal to unimodal polymerization behavior of the Zr-catalysts. We believe that this study should provide a starting point for theoretically exploring the mechanistic pathway of the complicated polymerization reactions.
Collapse
Affiliation(s)
- Soumen Saha
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.,Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan
| | - Masayoshi Takayanagi
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.,Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan.,The Center for Data Science Education and Research, Shiga University , 1-1-1, Banba, Hikone 522-8522, Japan
| | - Kentaro Matsumoto
- Graduate School of Information Science, Nagoya University , Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| | - Sandhya Karakkadparambil Sankaran
- Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan.,Graduate School of Information Science, Nagoya University , Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| | - Yuichi Tanaka
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.,Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan
| | - Nobuaki Koga
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.,Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan
| | - Masataka Nagaoka
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan.,Core Research for Evolutional Science and Technology, Japan Science and Technology Agency , Honmachi, Kawaguchi 332-0012, Japan.,Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University Katsura , Kyoto 615-8520, Japan
| |
Collapse
|
3
|
Yi J, Campbell ALO, Richter-Addo GB. Nitric oxide coupling to generate N 2O promoted by a single-heme system as examined by density functional theory. Nitric Oxide 2016; 60:69-75. [PMID: 27646954 DOI: 10.1016/j.niox.2016.09.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Revised: 08/11/2016] [Accepted: 09/14/2016] [Indexed: 11/25/2022]
Abstract
Bacteria utilize a heme/non-heme enzyme system to detoxify nitric oxide (NO) to N2O. In order to probe the capacity of a single-heme system to mediate this NO-to-N2O transformation, various scenarios for addition of electrons, protons, and a second NO molecule to a heme nitrosyl to generate N2O were explored by density functional theory calculations. We describe, utilizing this single-heme system, several stepwise intermediates along pathways that enable the critical N-N bond formation step yielding the desired Fe-N2O product. We also report a hitherto unreported directional second protonation that results in either productive N2O formation with loss of water, or formation of a non-productive hyponitrous acid adduct Fe{HONNOH}.
Collapse
Affiliation(s)
- Jun Yi
- Department of Biological Engineering, Nanjing University of Science and Technology, 200 Xiao Ling Wei Road, Nanjing, Jiangsu Province, 210094, PR China; Department of Chemistry and Biochemistry, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, OK, 73019, USA.
| | - Adam L O Campbell
- Department of Chemistry and Biochemistry, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, OK, 73019, USA
| | - George B Richter-Addo
- Department of Chemistry and Biochemistry, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, OK, 73019, USA.
| |
Collapse
|
5
|
Affiliation(s)
- Ashley M. Wright
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| | - Trevor W. Hayton
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States
| |
Collapse
|
6
|
Fehling C, Friedrichs G. Dimerization of HNO in Aqueous Solution: An Interplay of Solvation Effects, Fast Acid–Base Equilibria, and Intramolecular Hydrogen Bonding? J Am Chem Soc 2011; 133:17912-22. [DOI: 10.1021/ja2075949] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Carsten Fehling
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Olshausenstraße 40, 24098 Kiel, Germany
| | - Gernot Friedrichs
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Olshausenstraße 40, 24098 Kiel, Germany
| |
Collapse
|