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Xu J, Dai CM, Xu X, Jian J. Structural and spectroscopic characterization of large boron heterocyclic radicals: Matrix infrared spectroscopy and quantum chemical calculations. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 305:123539. [PMID: 37857070 DOI: 10.1016/j.saa.2023.123539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/08/2023] [Accepted: 10/14/2023] [Indexed: 10/21/2023]
Abstract
Six boron heterocyclic radicals with different conformations or configurations were synthesized in solid neon and identified by matrix isolation infrared spectroscopy as well as quantum-chemical calculations. The ground-state boron atom selectively attacks the C = C bond of cycloheptene forming η2 (1,2)-BC7H12 complex (A), which contains a chair conformation and a boat conformation. Species A isomerizes to the 2,3,4,5,6,7-hexahydroborocine radical (B), which involves an eight-membered boron heterocyclic ring and also has two isomers observed. The 1-(prop-1-en-1-yl)-2,3,4-dihydro borole radical (C) with E-configuration and Z-configuration is generated as the final product under UV light irradiation through ring contraction reaction and the hydrogen atom transfer reaction. The observation of species A and further photo-isomerization to species C is consistent with theoretical predictions that these reactions are thermodynamically exothermic and kinetically facile. This work not only provides a possible route for future design and synthesis of corresponding borole derivatives, but also provides new insights into the structural and spectroscopic information of boron heterocyclic radicals with different conformations and configurations.
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Affiliation(s)
- Jiaping Xu
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou, Zhejiang 311231, China
| | - Chuan-Ming Dai
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou, Zhejiang 311231, China
| | - Xin Xu
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou, Zhejiang 311231, China
| | - Jiwen Jian
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou, Zhejiang 311231, China.
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2
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Lavinda O, Witt CH, Woerpel KA. Origin of High Diastereoselectivity in Reactions of Seven-Membered-Ring Enolates. Angew Chem Int Ed Engl 2022; 61:e202114183. [PMID: 35076978 PMCID: PMC8940697 DOI: 10.1002/anie.202114183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Indexed: 11/10/2022]
Abstract
Unlike many reactions of their six-membered-ring counterparts, the reactions of chiral seven-membered-ring enolates are highly diastereoselective. Diastereoselectivity was observed for a range of substrates, including lactam, lactone, and cyclic ketone derivatives. The stereoselectivity arises from torsional and steric interactions that develop when electrophiles approach the diastereotopic π-faces of the enolates, which are distinguished by subtle differences in the orientation of nearby atoms of the ring.
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Affiliation(s)
- Olga Lavinda
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003, USA
| | - Collin H Witt
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003, USA
| | - K A Woerpel
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003, USA
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3
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Lavinda O, Witt CH, Woerpel KA. Origin of High Diastereoselectivity in Reactions of Seven‐Membered‐Ring Enolates. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202114183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Olga Lavinda
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
| | - Collin H. Witt
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
| | - K. A. Woerpel
- Department of Chemistry New York University 100 Washington Square East New York NY 10003 USA
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Griesbach CE, Peczuh MW. Characterization of the low energy conformations and differential reactivities of D-glucose and D-mannose based oxepines. Org Biomol Chem 2021; 19:10635-10646. [PMID: 34850804 DOI: 10.1039/d1ob01900g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Carbohydrate-based oxepines are valuable intermediates for the synthesis of septanose carbohydrates. Here we report the characterization of the preferred conformations of D-glucose and D-mannose based oxepines 1 and 2 using computational chemistry and NMR spectroscopy. Monte Carlo conformational searches on 1 and 2 were performed, followed by DFT optimization and single-point energy calculations on the low energy conformations of each oxepine. Coupling constants were computed for all unique conformations at a B3LYP/6-31G(d,p)u+1s level of theory and weighted based on a Boltzmann distribution. These values were then compared to the experimental values collected using 3JH,H values collected from 1H NMR spectra. Information from the MC/DFT approach was then used in a least squares method that correlated DFT calculated and observed 3JH,H coupling constants. The conformations of 1 and 2 are largely governed by a combination of the rigidifying enol ether element in combination with the reduction of unfavorable interactions. The vinylogous anomeric effect (VAE) emerged as a consequence, rather than a driver of conformations. Oxepine 1 showed greater reactivity in Ferrier rearrangement reactions relative to oxepine 2, in line with its greater %VAE.
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Affiliation(s)
- Caleb E Griesbach
- Department of Chemistry, University of Connecticut, 55 N. Eagleville Road, U3060, Storrs, CT 06269-3060, USA.
| | - Mark W Peczuh
- Department of Chemistry, University of Connecticut, 55 N. Eagleville Road, U3060, Storrs, CT 06269-3060, USA.
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Dittrich J, Kather M, Holzberger A, Pich A, Gohlke H. Cumulative Submillisecond All-Atom Simulations of the Temperature-Induced Coil-to-Globule Transition of Poly(N-vinylcaprolactam) in Aqueous Solution. Macromolecules 2020. [DOI: 10.1021/acs.macromol.0c01896] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Jonas Dittrich
- Institute for Pharmaceutical and Medicinal Chemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Michael Kather
- DWI-Leibniz-Institute for Interactive Materials, RWTH Aachen University, 52056 Aachen, Germany
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, 52074 Aachen, Germany
| | - Anna Holzberger
- DWI-Leibniz-Institute for Interactive Materials, RWTH Aachen University, 52056 Aachen, Germany
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, 52074 Aachen, Germany
| | - Andrij Pich
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich, 52425 Jülich, Germany
- DWI-Leibniz-Institute for Interactive Materials, RWTH Aachen University, 52056 Aachen, Germany
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, 52074 Aachen, Germany
| | - Holger Gohlke
- Institute for Pharmaceutical and Medicinal Chemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich, 52425 Jülich, Germany
- John von Neumann Institute for Computing (NIC), Jülich Supercomputing Centre (JSC), Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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Kim SJ, Lough AJ, Batey RA. An Approach to the 9-Oxo-10-oxabicyclo[5.3.0]dec-2-ene Core of the Guaianolide and Pseudoguaianolide Sesquiterpenes via a Domino Electrocyclic Ring-Opening/Carboxylic Acid Trapping of a gem-Dibromocyclopropane. J Org Chem 2018; 83:13799-13810. [PMID: 30303376 DOI: 10.1021/acs.joc.8b02081] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A domino silver(I)-promoted electrocyclic 2π-disrotatory electrocyclic ring-opening/intramolecular nucleophilic trapping of [ n.1.0]-dibromocyclopropanes by tethered carboxylic acids results in cyclization to butyrolactones fused to six- and seven-membered carbocycles. In the case of bicyclic [4.3.0] lactones the cis-fused stereoisomer was formed, whereas for the bicyclic [5.3.0] lactones the trans-fused stereoisomer was formed. Optimal conditions for the reaction used silver(I) trifluoroacetate (2.0 equiv) in trifluoroethanol or with added pyridine (2.0 equiv) and NaPF6 (5.0 equiv). The dibromocyclopropane precursors were made through cyclopropanation with in situ-generated dibromocarbene. The trans-fused lactones are potentially useful building blocks for pseudoguaianolide, guaianolide, and xanthanolide total synthesis. A computational study on the conformational preferences of these systems indicates that the trans-fused bicyclic [5.3.0] butyrolactones are lower in energy than the corresponding cis-fused lactones at the B3LYP/cc-pVTZ level of theory.
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Affiliation(s)
- Simon J Kim
- Davenport Research Laboratories, Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S 3H6 , Canada
| | - Alan J Lough
- Davenport Research Laboratories, Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S 3H6 , Canada
| | - Robert A Batey
- Davenport Research Laboratories, Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S 3H6 , Canada
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Beaver MG, Buscagan TM, Lavinda O, Woerpel KA. Stereoelectronic Model To Explain Highly Stereoselective Reactions of Seven-Membered-Ring Oxocarbenium-Ion Intermediates. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201507806] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Trixia M. Buscagan
- Department of Chemistry and Chemical Engineering; California Institute of Technology; 1200 E. California Blvd, MNC 101-20 Pasadena CA 91125 USA
| | - Olga Lavinda
- Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - K. A. Woerpel
- Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
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Beaver MG, Buscagan TM, Lavinda O, Woerpel KA. Stereoelectronic Model To Explain Highly Stereoselective Reactions of Seven-Membered-Ring Oxocarbenium-Ion Intermediates. Angew Chem Int Ed Engl 2016; 55:1816-9. [PMID: 26791884 DOI: 10.1002/anie.201507806] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Revised: 10/20/2015] [Indexed: 11/11/2022]
Abstract
Nucleophilic attack on seven-membered-ring oxocarbenium ions is generally highly stereoselective. The preferred mode of nucleophilic attack forms the product in a conformation that minimizes transannular interactions, thus leading to different stereoselectivity as compared to that of reactions involving six-membered-ring oxocarbenium ions.
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Affiliation(s)
| | - Trixia M Buscagan
- Department of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, MNC 101-20, Pasadena, CA, 91125, USA
| | - Olga Lavinda
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA
| | - K A Woerpel
- Department of Chemistry, New York University, 100 Washington Square East, New York, NY, 10003, USA.
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Virovets AV, Cherkasova EV, Peresypkina EV, Cherkasova TG. Hydrogen bonding induced polymorphism in the scandium(III) complex with ε-caprolactam. Z KRIST-CRYST MATER 2015. [DOI: 10.1515/zkri-2015-1854] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Two polymorphs of [Sc(cpl)6][Cr(NCS)6] (cpl=ε- C6H11NO), trigonal and monoclinic, form purple elongated narrow plates and brownish-purple prisms and are formed concomitantly irrespectively of the crystallization conditions. In the trigonal polymorph both cation and anion possess C
3i
site symmetry while in the monoclinic form cation and anion lie on inversion centre and 2-fold axis respectively. The nature of the polymorphism traces back to a redistribution of inter- and intramolecular hydrogen bonds that causes different conformation of the complex cations, different hydrogen bonding and different molecular packings. The [Sc(cpl)6]3+ cations in the structure of the trigonal polymorph form intermolecular N(H)…S, and in the monoclinic form both N(H)…S inter- and N(H)…O intramolecular hydrogen bonds with NCS groups of [Cr(NCS)6]3− and cpl ligands. This aggregation leads to chains, where the cations and the anions alternate, in the trigonal modification and to layers, in which each ion is surrounded by four counterions, in the monoclinic form. Both polymorphs possess thermochromic properties, and a reversible color change from light purple to dark green takes place at 470–475 K.
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Gruber T, Thompson AL, Odell B, Bombicz P, Schofield CJ. Conformational studies on substituted ε-caprolactams by X-ray crystallography and NMR spectroscopy. NEW J CHEM 2014. [DOI: 10.1039/c4nj01339e] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Jahn MK, Dewald DA, Vallejo‐López M, Cocinero EJ, Lesarri A, Zou W, Cremer D, Grabow J. Pseudorotational Landscape of Seven‐Membered Rings: The Most Stable Chair and Twist‐Boat Conformers of ε‐Caprolactone. Chemistry 2014; 20:14084-9. [DOI: 10.1002/chem.201403379] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2014] [Indexed: 11/07/2022]
Affiliation(s)
- Michaela K. Jahn
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried‐Wilhelm‐Leibniz Universität, Callinstraße 3A, 30167 Hannover (Germany), Fax: (+49)511‐7624009
| | - David A. Dewald
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried‐Wilhelm‐Leibniz Universität, Callinstraße 3A, 30167 Hannover (Germany), Fax: (+49)511‐7624009
| | - Montserrat Vallejo‐López
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, P. Belén, 7, 47011 Valladolid (Spain), Fax: (+34)983‐423013
| | - Emilio J. Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco, Ap. 644, 48080 Bilbao (Spain)
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, P. Belén, 7, 47011 Valladolid (Spain), Fax: (+34)983‐423013
| | - Wenli Zou
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, Texas 75275 (USA)
| | - Dieter Cremer
- Computational and Theoretical Chemistry Group (CATCO), Department of Chemistry, Southern Methodist University, Dallas, Texas 75275 (USA)
| | - Jens‐Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried‐Wilhelm‐Leibniz Universität, Callinstraße 3A, 30167 Hannover (Germany), Fax: (+49)511‐7624009
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Conformational analysis of azepane, oxepane, silepane, phosphepane, thiepane and the azepanium cation by high level quantum mechanics. Struct Chem 2013. [DOI: 10.1007/s11224-012-0192-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Urbina-Blanco CA, Skibiński M, O'Hagan D, Nolan SP. Accelerating influence of the gem-difluoromethylene group in a ring-closing olefin metathesis reaction. A Thorpe–Ingold effect? Chem Commun (Camb) 2013; 49:7201-3. [DOI: 10.1039/c3cc44312d] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Interplay of thermochemistry and Structural Chemistry, the journal (volume 23, 2012, issues 1–3) and the discipline. Struct Chem 2012. [DOI: 10.1007/s11224-012-0141-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Groenewald F, Mateura M, Dillen J. A computational investigation of the effect of the double bond on the conformations of seven membered rings. Struct Chem 2012. [DOI: 10.1007/s11224-012-0073-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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