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Martín-Fernández C, Elguero J, Alkorta I. Beryllium as a Base: Complexes of Be(CO) 3 with HX (X=F, Cl, Br, CN, NC, CCH, OH). Chemphyschem 2024; 25:e202400608. [PMID: 38950128 DOI: 10.1002/cphc.202400608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 06/28/2024] [Accepted: 07/01/2024] [Indexed: 07/03/2024]
Abstract
Beryllium chemistry is typically governed by its electron deficient character, but in some compounds it can act as a base. In order to understand better the unusual basicity of Be, we have systematically explored the complexes of one such compound, Be(CO)3, towards several hydrogen bond donors HX (X=F, Cl, Br, CN, NC, CCH, OH). For all complexes we find three different minima, two hydrogen bonded minima (to the Be or O atoms), and one weak beryllium bonded minimum. Further characterization of the interactions using a topological analysis of the electron density and Symmetry Adapted Perturbation Theory (SAPT) provide insight into the nature of these interactions. Overall these results highlight the capability of certain beryllium compounds to act as either a weak Lewis acid or, unconventionally, a Lewis base whose basicity towards hydrogen bonding is comparable to that of π systems.
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Affiliation(s)
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
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2
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Yang Q, Li Q, Scheiner S. Diboron Bonds Between BX 3 (X=H, F, CH 3 ) and BYZ 2 (Y=H, F; Z=CO, N 2 , CNH). Chemphyschem 2021; 22:1461-1469. [PMID: 34089563 DOI: 10.1002/cphc.202100332] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 05/27/2021] [Indexed: 11/12/2022]
Abstract
The ability of B atoms on two different molecules to engage with one another in a noncovalent diboron bond is studied by ab initio calculations. Due to electron donation from its substituents, the trivalent B atom of BYZ2 (Z=CO, N2 , and CNH; Y=H and F) has the ability to in turn donate charge to the B of a BX3 molecule (X=H, F, and CH3 ), thus forming a B⋅⋅⋅B diboron bond. These bonds are of two different strengths and character. BH(CO)2 and BH(CNH)2 , and their fluorosubstituted analogues BF(CO)2 and BF(CNH)2 , engage in a typical noncovalent bond with B(CH3 )3 and BF3 , with interaction energies in the 3-8 kcal/mol range. Certain other combinations result in a much stronger diboron bond, in the 26-44 kcal/mol range, and with a high degree of covalent character. Bonds of this type occur when BH3 is added to BH(CO)2 , BH(CNH)2 , BH(N2 )2 , and BF(CO)2 , or in the complexes of BH(N2 )2 with B(CH3 )3 and BF3 . The weaker noncovalent bonds are held together by roughly equal electrostatic and dispersion components, complemented by smaller polarization energy, while polarization is primarily responsible for the stronger ones.
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Affiliation(s)
- Qingqing Yang
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, P. R. China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, 264005, P. R. China
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University, Logan, UT, 84322-0300, USA
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Exploring pentavalent phosphorous bonding in phosphoryl chloride-halocarbon heterodimers at low temperatures and ab initio Computations. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Sruthi PK, Chandra S, Ramanathan N, Sundararajan K. Unusual blue to red shifting of C-H stretching frequency of CHCl 3 in co-operatively P⋯Cl phosphorus bonded POCl 3-CHCl 3 heterodimers at low temperature inert matrixes. J Chem Phys 2020; 153:174305. [PMID: 33167652 DOI: 10.1063/5.0031162] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Heterodimers of POCl3-CHCl3 were generated in Ne, Ar, and Kr matrixes at low temperatures and were studied using infrared spectroscopy. The remarkable role of co-operative pentavalent phosphorus bonding in the stabilization of the structure dictated by hydrogen bonding is deciphered. The complete potential energy surface of the heterodimer was scanned by ab initio and density functional theory computational methodologies. The hydrogen bond between the phosphoryl oxygen of POCl3 and C-H group of CHCl3 in heterodimers induces a blue-shift in the C-H stretching frequency within the Ne matrix. However, in Ar and Kr matrixes, the C-H stretching frequency is exceptionally red-shifted in stark contrast with Ne. The plausibility of the Fermi resonance by the C-H stretching vibrational mode with higher order modes in the heterodimers has been eliminated as a possible cause within Ar and Kr matrixes by isotopic substitution (CDCl3) experiments. To evaluate the influence of matrixes as a possible cause of red-shift, self-consistent Iso-density polarized continuum reaction field model was applied. This conveyed the important role of the dielectric matrixes in inducing the fascinating vibrational shift from blue (Ne) to red (Ar and Kr) due to the matrix specific transmutation of the POCl3-CHCl3 structure. The heterodimer produced in the Ne matrix possesses a cyclic structure stabilized by hydrogen bonding with co-operative phosphorus bonding, while in Ar and Kr the generation of an acyclic open structure stabilized solely by hydrogen bonding is promoted. Compelling justification regarding the dispersion force based influence of matrix environments in addition to the well-known dielectric influence is presented.
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Affiliation(s)
- P K Sruthi
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - Swaroop Chandra
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - N Ramanathan
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
| | - K Sundararajan
- Homi Bhabha National Institute, Materials Chemistry and Metal Fuel Cycle Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, India
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Chandra S, Suryaprasad B, Ramanathan N, Sundararajan K. Dominance of unique Pπ phosphorus bonding with π donors: evidence using matrix isolation infrared spectroscopy and computational methodology. Phys Chem Chem Phys 2020; 22:20771-20791. [PMID: 32909555 DOI: 10.1039/d0cp02880k] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Albeit the first account of hypervalentπ interactions has been reported with halogenπ interactions, the feasibility of their extension to other hypervalent atoms as possible Lewis acids is still open. In this work, the role of phosphorus as an acceptor from the π electron cloud (Pπ pnicogen or phosphorus bonding) in PCl3-C2H2 and PCl3-C2H4 heterodimers is explored, by combining matrix isolation infrared spectroscopy with ab initio and DFT computational methodologies. The respective potential energy surfaces of the PCl3-C2H2 and PCl3-C2H4 heterodimers reveal unique minima stabilized by a concert of reasonably strong to weak interactions, of which Pπ phosphorus bonding was energetically dominant. Heterodimers, trimers and tetramers bound primarily by this unique phosphorus bond were generated at low temperatures. The dominance of phosphorus bonding in the PCl3-C2H2 and PCl3-C2H4 heterodimers over other interactions (such as Hπ, HCl, HP, Clπ and lone pair-π interactions) was confirmed and substantiated using extended quantum theory of atoms in molecules, natural bond orbital, electrostatic potential mapping and energy decomposition analyses. The following inferences in correlation with results from non-covalent-interaction analysis offer a complete understanding of the nature of the Pπ phosphorus bonding interactions. The significance of electrostatic forces kinetically favoring the formation of phosphorus bonded heterodimers, in addition to thermodynamic stabilization, is demonstrated experimentally.
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Affiliation(s)
- Swaroop Chandra
- Homi Bhabha National Institute, Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Center for Atomic Research, Kalpakkam - 603102, Tamil Nadu, India.
| | - B Suryaprasad
- Homi Bhabha National Institute, Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Center for Atomic Research, Kalpakkam - 603102, Tamil Nadu, India.
| | - N Ramanathan
- Homi Bhabha National Institute, Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Center for Atomic Research, Kalpakkam - 603102, Tamil Nadu, India.
| | - K Sundararajan
- Homi Bhabha National Institute, Materials Chemistry & Metal Fuel Cycle Group, Indira Gandhi Center for Atomic Research, Kalpakkam - 603102, Tamil Nadu, India.
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Junxi L, Yu D, Jun B, Zhenhua L, Xiaoe W, Qiong S. Theoretical study of isomers XBEY, BEXY, and XYBE (E = N, P, and As, and X, Y = F and Cl): Substituent effect. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Del Bene JE, Alkorta I, Elguero J. Complexes H 2 CO:PXH 2 and HCO 2 H : PXH 2 for X=NC, F, Cl, CN, OH, CCH, CH 3 , and H: Pnicogen Bonds and Hydrogen Bonds. Chemphyschem 2020; 21:741-748. [PMID: 32069382 DOI: 10.1002/cphc.202000099] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 02/18/2020] [Indexed: 11/09/2022]
Abstract
Ab initio MP2/aug'-cc-pVTZ calculations have been carried out to investigate H2 CO : PXH2 pnicogen-bonded complexes and HCO2 H : PXH2 complexes that are stabilized by pnicogen bonds and hydrogen bonds, with X=NC, F, Cl, CN, OH, CCH, CH3 , and H. The binding energies of these complexes exhibit a second-order dependence on the O-P distance. DFT-SAPT binding energies correlate linearly with MP2 binding energies. The HCO2 H : PXH2 complexes are stabilized by both a pnicogen bond and a hydrogen bond, resulting in greater binding energies for the HCO2 H : PXH2 complexes compared to H2 CO : PXH2 . Neither the O-P distance across the pnicogen bond nor the O-P distance across the hydrogen bond correlates with the binding energies of these complexes. The nonlinearity of the hydrogen bonds suggests that they are relatively weak bonds, except for complexes in which the substituent X is either CH3 or H. The pnicogen bond is the more important stabilizing interaction in the HCO2 H : PXH2 complexes except when the substituent X is a more electropositive group. EOM-CCSD spin-spin coupling constants 1p J(O-P) across pnicogen bonds in H2 CO:PXH2 and HCO2 H : PXH2 complexes increase as the O-P distance decreases, and exhibit a second order dependence on that distance. There is no correlation between 2h J(O-P) and the O-P distance across the hydrogen bond in the HCO2 H : PXH2 complexes. 2h J(O-P) coupling constants for complexes with X=CH3 and H have much greater absolute values than anticipated from their O-P distances.
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Affiliation(s)
- Janet E Del Bene
- Department of Chemistry, Youngstown State University, Youngstown, Ohio, 44555, USA
| | - Ibon Alkorta
- Instituto de Química Médica (IQM-CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (IQM-CSIC), Juan de la Cierva, 3, 28006, Madrid, Spain
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Ferrer M, Montero-Campillo MM, Mó O, Yáñez M, Alkorta I, Elguero J. Bonding between electron-deficient atoms: strong Lewis-acid character preserved in X–Y–X (X = B, Al; Y = Be, Mg) bridges. NEW J CHEM 2020. [DOI: 10.1039/d0nj01803a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Beryllium bis(diazaborolyl) derivatives and their Mg and Al-containing analogues are stable compounds stabilized through covalent bonds between electron-deficient atoms, and behave as good Lewis acids.
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Affiliation(s)
- Maxime Ferrer
- Departamento de Química
- Facultad de Ciencias
- Módulo 13, and Institute of Advanced Chemical Sciences (IadChem). Universidad Autónoma de Madrid
- E-28049 Madrid
- Spain
| | - M. Merced Montero-Campillo
- Departamento de Química
- Facultad de Ciencias
- Módulo 13, and Institute of Advanced Chemical Sciences (IadChem). Universidad Autónoma de Madrid
- E-28049 Madrid
- Spain
| | - Otilia Mó
- Departamento de Química
- Facultad de Ciencias
- Módulo 13, and Institute of Advanced Chemical Sciences (IadChem). Universidad Autónoma de Madrid
- E-28049 Madrid
- Spain
| | - Manuel Yáñez
- Departamento de Química
- Facultad de Ciencias
- Módulo 13, and Institute of Advanced Chemical Sciences (IadChem). Universidad Autónoma de Madrid
- E-28049 Madrid
- Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC)
- E-28006 Madrid
- Spain
| | - José Elguero
- Instituto de Química Médica (CSIC)
- E-28006 Madrid
- Spain
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Sruthi PK, Sarkar S, Ramanathan N, Sundararajan K. Elusive hypervalent phosphorus⋯π interactions: evidence for paradigm transformation from hydrogen to phosphorus bonding at low temperatures. Phys Chem Chem Phys 2019; 21:12250-12264. [DOI: 10.1039/c9cp01925a] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
A paradigm transformation from hydrogen to phosphorus bonding is found to depend on the proton affinity of the interacting π-systems.
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Affiliation(s)
- P. K. Sruthi
- Materials Chemistry and Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Centre for Atomic Research
- Kalpakkam-603 102
- India
| | - Shubhra Sarkar
- Materials Chemistry and Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Centre for Atomic Research
- Kalpakkam-603 102
- India
| | - N. Ramanathan
- Materials Chemistry and Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Centre for Atomic Research
- Kalpakkam-603 102
- India
| | - K. Sundararajan
- Materials Chemistry and Metal Fuel Cycle Group
- Homi Bhabha National Institute
- Indira Gandhi Centre for Atomic Research
- Kalpakkam-603 102
- India
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10
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Interplay of thermochemistry and Structural Chemistry, the journal (volume 28, 2017, issues 5–6), and the discipline. Struct Chem 2018. [DOI: 10.1007/s11224-018-1217-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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11
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Montero-Campillo MM, Alkorta I, Elguero J. Fostering the Basic Instinct of Boron in Boron-Beryllium Interactions. J Phys Chem A 2018. [PMID: 29537845 DOI: 10.1021/acs.jpca.8b01551] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
A set of complexes L2HB···BeX2 (L = CNH, CO, CS, N2, NH3, NCCH3, PH3, PF3, PMe3, OH2; X = H, F) containing a boron-beryllium bond is described at the M06-2X/6-311+G(3df,2pd)//M062-2X/6-31+G(d) level of theory. In this quite unusual bond, boron acts as a Lewis base and beryllium as a Lewis acid, reaching binding energies up to -283.3 kJ/mol ((H2O)2HB···BeF2). The stabilization of these complexes is possible thanks to the σ-donor role of the L ligands in the L2HB···BeX2 structures and the powerful acceptor nature of beryllium. According to the topology of the density, these B-Be interactions present positive laplacian values and negative energy densities, covering different degrees of electron sharing. ELF calculations allowed measuring the population in the interboundary B-Be region, which varies between 0.20 and 2.05 electrons upon switching from the weakest ((CS)2HB···BeH2) to the strongest complex ((H2O)2HB···BeF2). These B-Be interactions can be considered as beryllium bonds in most cases.
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Affiliation(s)
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC) , Juan de la Cierva, 3 , 28006 Madrid , Spain
| | - José Elguero
- Instituto de Química Médica (CSIC) , Juan de la Cierva, 3 , 28006 Madrid , Spain
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Sruthi PK, Ramanathan N, Sarkar S, Sundararajan K. Pentavalent phosphorus as a unique phosphorus donor in POCl3 homodimer and POCl3–H2O heterodimer: matrix isolation infrared spectroscopic and computational studies. Phys Chem Chem Phys 2018; 20:22058-22075. [DOI: 10.1039/c8cp03937b] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Phosphorus, an important element among the pnicogen group, opens up avenues for experimental and computational explorations of its interaction in a variety of compounds.
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Affiliation(s)
- P. K. Sruthi
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - N. Ramanathan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - Shubhra Sarkar
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - K. Sundararajan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
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Ceylan YS, Cundari TR. Computational Analysis of Transition Metal-Terminal Boride Complexes. J Phys Chem A 2017; 121:9358-9368. [PMID: 29129056 DOI: 10.1021/acs.jpca.7b09103] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A computational analysis of model transition-metal terminal boride [MB(PNPR)] complexes is reported. A combination of density functional theory methods, natural bond orbital analysis, and multiconfiguration self-consistent field calculations were employed to investigate the structure and bonding of terminal boride complexes, in particular, the extent of metal dπ-boron pπ bonding. Comparison of metal-boride, -borylene, and-boryl bond lengths confirms the presence of metal-boron π bonds, albeit the modest shortening (∼3%) of the metal-boron bond suggests that the π-bonding is very weak in terminal borides. Calculated free energies of H2 addition to the boride complexes to yield the corresponding boryl complexes indicate that metal-boride π-bond strengths are 22 kcal/mol or less as compared to 44 kcal/mol for an analogous nitride complex. It is concluded that, for the boride complexes studied, covering a range of different 4d and 5d metals, that the metal-boride bond consists of a reasonably covalent σ but two very polarized metal-boron π bonds. The high polarization of the boron-to-metal π bonds indicates that the terminal boride is an acceptor or Z-type ligand.
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Affiliation(s)
| | - Thomas R Cundari
- Department of Chemistry and Center of Advanced Scientific Computing and Modeling, University of North Texas , 115 Union Circle, No. 305070, Denton, Texas 76203-5017, United States
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