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Legnardi M, Poletto F, Alam S, Cherfane A, Le-Tallec B, Franzo G, Tucciarone CM, Lupini C, Pasotto D, Cecchinato M. Molecular epidemiology of infectious bursal disease virus in the Near East and Persian Gulf regions. Avian Pathol 2024; 53:56-67. [PMID: 37823857 DOI: 10.1080/03079457.2023.2270531] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 10/09/2023] [Indexed: 10/13/2023]
Abstract
RESEARCH HIGHLIGHTS Different field IBDVs were found to circulate in the Near and Middle East.Multiple atypical genotypes (A3B1, A4B1, A6B1) were found to circulate extensively.Traditional very virulent IBDVs (A3B2) were a minority of the detected strains.Viral exchanges can be hypothesized between the region and different continents.
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Affiliation(s)
- Matteo Legnardi
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | - Francesca Poletto
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | - Safaa Alam
- Near East, Gulf and Sudan CEVA Animal Health LLC, Beirut, Lebanon
| | | | | | - Giovanni Franzo
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | | | - Caterina Lupini
- Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Italy
| | - Daniela Pasotto
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
| | - Mattia Cecchinato
- Department of Animal Medicine, Production and Health, University of Padova, Legnaro, Italy
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2
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Tomás G, Marandino A, Techera C, Olivera V, Perbolianachis P, Fuques E, Grecco S, Hernández M, Hernández D, Calleros L, Craig MI, Panzera Y, Vagnozzi A, Pérez R. Origin and global spreading of an ancestral lineage of the infectious bursal disease virus. Transbound Emerg Dis 2019; 67:1198-1212. [PMID: 31834976 DOI: 10.1111/tbed.13453] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 11/30/2019] [Accepted: 12/04/2019] [Indexed: 12/21/2022]
Abstract
Infectious bursal disease virus (IBDV) is an economically relevant and widespread pathogen that produces immunosuppression in young chickens. IBDV is genetically classified into seven genogroups (G1-G7), where the traditional classic, variant and very virulent strains correspond to G1, G2 and G3, respectively. The G4 strains, also known as 'distinct' (dIBDV), have recently acquired increased relevance because of their prevalence and notorious impair to the poultry industry in South America. Here, worldwide dIBDV strains were studied using phylogenetic and phylodynamic approaches. The phylogenetic analyses performed using partial and complete sequences of both viral segments (A and B) consistently clustered the dIBDV strains in a monophyletic group. The analyses of the VP5, polyprotein and VP1 coding regions identified amino acid residues that act as markers for the identification of the entire dIBDV group or different sub-populations. The phylodynamic analyses performed using the hypervariable region of VP2 indicated that the dIBDV strains emerged in the early 1930s in Eastern Europe, shortly after the emergence of classic strains (1927) and before variant (1949) and very virulent strains (1967). The analysis of the migration routes indicated that after its emergence, the dIBDV strains spread to Eastern Asia around 1959, to Brazil around 1963, and to Argentina around 1990. These inter-continental migrations resulted in three sub-populations that are currently represented by strains from (a) Brazil, (b) Eastern Asia and Canada, and (c) Eastern Europe, Argentina and Uruguay. Taken together, our results highlight the complex evolutionary history of IBDV and the importance of new phylodynamic data to unravel and nearly follow the different evolutionary pathways taken by this important poultry pathogen.
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Affiliation(s)
- Gonzalo Tomás
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Ana Marandino
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Claudia Techera
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Valeria Olivera
- Instituto de Virología, Centro de Investigaciones en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnología Agropecuaria, Buenos Aires, Argentina
| | - Paula Perbolianachis
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Eddie Fuques
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Sofía Grecco
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Martín Hernández
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Diego Hernández
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Lucía Calleros
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - María Isabel Craig
- Instituto de Virología, Centro de Investigaciones en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnología Agropecuaria, Buenos Aires, Argentina
| | - Yanina Panzera
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Ariel Vagnozzi
- Instituto de Virología, Centro de Investigaciones en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnología Agropecuaria, Buenos Aires, Argentina
| | - Ruben Pérez
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
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Yilmaz A, Turan N, Bayraktar E, Gurel A, Cizmecigil UY, Aydin O, Bamac OE, Cecchinato M, Franzo G, Tali HE, Cakan B, Savic V, Richt JA, Yilmaz H. Phylogeny and evolution of infectious bursal disease virus circulating in Turkish broiler flocks. Poult Sci 2019; 98:1976-1984. [PMID: 30668778 PMCID: PMC6448131 DOI: 10.3382/ps/pey551] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 11/28/2018] [Indexed: 12/18/2022] Open
Abstract
The emergence of new infectious bursal disease virus (IBDV) variants can threaten poultry health and production all over the world causing significant economic losses. Therefore, this study was performed to determine IBDV molecular epidemilogy, VP2 gene variation, and corresponding pathological lesions in IBDV infected chickens in Turkey. For this, 1855 bursa of Fabricius samples were collected from 371 vaccinated broiler flocks. Atrophia and haemorrhages were seen in the bursa Fabricius of very virulent IBDV (vvIBDV) infected chickens. Partial VP2 gene was sequenced and phylogenetic, recombination, and evolutionary analyses were performed. 1548 (83.5%) out of 1855 of bursa of Fabricius samples were IBDV positive and 1525 of those could be sequenced. The recombination analysis did not detect occurrence of any recombination event among the Turkish strains. Among 1525 sequenced samples, 1380 of them were found to be classical strains. Among 1380 classical strains, 1317 were similar to IBDV 2512, 11 to Faragher 52/70, 40 to 228 E, and 12 to Lukert strain. Out of 1525 reverse transcriptase ploymerase chain reaction positive samples, 144 of them were found to be similar to vvIBDV-VP2 gene reported to GenBank previously. The phylogenetic tree performed on a broad sequence dataset demonstrated grouping of vvIBDV Turkish strains in three different clusters, including sequences collected also from Iraq and Kuwait (Cluster 1), Indian (Cluster 2), and a distinct Turkish-only cluster (Cluster 3). The evolutionary rate estimation on branches/clades including Turkish strain mirrored the expected one for RNA viruses and no significant differences were found among different considered branches. In conclusion, results of this study indicate that vvIBDV strains similar to those circulating in various countries in the Middle East are present and undergoing evolution in chickens from Turkish broiler flocks. This point needs to be taken into account in planning adequate control strategies.
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Affiliation(s)
- A Yilmaz
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - N Turan
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - E Bayraktar
- CEVA Animal Health, Iz Plaza Giz, Eski Büyükdere Caddesi, No-9, Kat-21, Maslak, Istanbul, Turkey
| | - A Gurel
- Department of Pathology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - U Y Cizmecigil
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - O Aydin
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - O Erdogan Bamac
- Department of Pathology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - M Cecchinato
- Dipartimento di Medicina Animale, Produzioni e Salute (MAPS), Università degli Studi di Padova, Agripolis - Viale dell'Università, 16, 35020 Legnaro (PD), Italia
| | - G Franzo
- Dipartimento di Medicina Animale, Produzioni e Salute (MAPS), Università degli Studi di Padova, Agripolis - Viale dell'Università, 16, 35020 Legnaro (PD), Italia
| | - H E Tali
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
| | - B Cakan
- CEVA Animal Health, Iz Plaza Giz, Eski Büyükdere Caddesi, No-9, Kat-21, Maslak, Istanbul, Turkey
| | - V Savic
- Poultry Center, Croatian Veterinary Institute, Heinzelova 55, 10000 Zagreb, Croatia
| | - J A Richt
- Department of Diagnostic Medicine and Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan KS66506, USA
| | - H Yilmaz
- Department of Virology, Veterinary Faculty, Istanbul University-Cerrahpasa, Avcilar, 34320 Istanbul, Turkey
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Tomás G, Hernández M, Marandino A, Techera C, Grecco S, Hernández D, Banda A, Panzera Y, Pérez R. Development of an RT-qPCR assay for the specific detection of a distinct genetic lineage of the infectious bursal disease virus. Avian Pathol 2016; 46:150-156. [PMID: 27924642 DOI: 10.1080/03079457.2016.1228827] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
The infectious bursal disease virus (IBDV) is a major health threat to the world's poultry industry despite intensive controls including proper biosafety practices and vaccination. IBDV (Avibirnavirus, Birnaviridae) is a non-enveloped virus with a bisegmented double-stranded RNA genome. The virus is traditionally classified into classic, variant and very virulent strains, each with different epidemiological relevance and clinical implications. Recently, a novel worldwide spread genetic lineage was described and denoted as distinct (d) IBDV. Here, we report the development and validation of a reverse transcription-quantitative polymerase chain reaction (RT-qPCR) assay for the specific detection of dIBDVs in the global poultry industry. The assay employs a TaqMan-MGB probe that hybridizes with a unique molecular signature of dIBDV. The assay successfully detected all the assessed strains belonging to the dIBDV genetic lineage, showing high specificity and absence of cross-reactivity with non-dIBDVs, IBDV-negative samples and other common avian viruses. Using serial dilutions of in vitro-transcribed RNA we obtained acceptable PCR efficiencies and determination coefficients, and relatively small intra- and inter-assay variability. The assay demonstrated a wide dynamic range between 103 and 108 RNA copies/reaction. This rapid, specific and quantitative assay is expected to improve IBDV surveillance and control worldwide and to increase our understanding of the molecular epidemiology of this economically detrimental poultry pathogen.
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Affiliation(s)
- Gonzalo Tomás
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Martín Hernández
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Ana Marandino
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Claudia Techera
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Sofia Grecco
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Diego Hernández
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Alejandro Banda
- b Poultry Research and Diagnostic Laboratory, College of Veterinary Medicine , Mississippi State University , Pearl , MS , USA
| | - Yanina Panzera
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
| | - Ruben Pérez
- a Sección Genética Evolutiva, Departamento de Biología Animal , Instituto de Biología, Facultad de Ciencias, Universidad de la República , Montevideo , Uruguay
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Owolodun OA, Yakubu B, Jambol AR, Audu BJ, Dogonyaro BB, Luka PD. Further evidence for very virulent infectious bursal disease virus in vaccinated chickens in Nigeria. Trop Anim Health Prod 2015; 47:1437-41. [PMID: 26149517 DOI: 10.1007/s11250-015-0880-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2015] [Accepted: 06/18/2015] [Indexed: 10/23/2022]
Abstract
Reverse transcription polymerase chain reaction (RT-PCR) and partial sequencing of the VP2 hypervariable region was performed on clinical samples from two infectious bursal disease (IBD) outbreaks in Plateau state, Nigeria. IBD virus RNA was detected in all four bursa of Fabricius samples. Nucleotide sequencing and analysis of the four samples revealed high similarity to previous IBDV sequences from northern and southern Nigeria. The deduced amino acid sequences were compared to reference IBDV strains retrieved from the GenBank; virulence markers A222, I256, and I294 were conserved in both outbreak and reference sequences. Amino acid residue S254 was conserved in the outbreak viruses and previous viruses from northern Nigeria. Phylogenetic analysis revealed that all four viruses were very virulent IBDVs. These viruses clustered with vv2-1 variant viruses from Oyo and Ogun states and less closely with vv2-2 isolates from Tanzania. The nucleotide identity of the sequences in this study ranged from 99.6 to 100 % with each other. These findings are further evidence of IBD outbreaks in vaccinated chicken flocks in Nigeria.
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Affiliation(s)
- Olajide Adewale Owolodun
- Applied Biotechnology Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria.
| | - Bitrus Yakubu
- Applied Biotechnology Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria
| | - Anvou Rachael Jambol
- Applied Biotechnology Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria
| | - Benshak John Audu
- Applied Biotechnology Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria
| | - Bajehson Banenat Dogonyaro
- Viral Research Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria
| | - Pam Dachung Luka
- Applied Biotechnology Division, National Veterinary Research Institute, P.M.B, 930001, Vom, Plateau State, Nigeria
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