Assessing aquatic biodiversity of zooplankton communities in an urban landscape

Metabarcoding of zooplankton communities of Dianchi Lake based on the mitochondrial cytochrome oxidase subunit 1 gene

Freshwater lakes as an essential component of the ecosystem, provide ecological resources in addition to economic source for humans. Under recent climate change scenario, preserving the biodiversity of freshwater ecosystems is crucial. This study aimed to characterize the diversity of zooplankton communities in Dianchi Lake, located in Kunming Municipality, Yunnan Province, China, using Illumina high-throughput sequencing of the cytochrome oxidase subunit 1 (COI) gene marker. A total of 18 water samples were collected including 16 from the outer sea area of Dianchi Lake: 4 from the east (E1-4), 4 from the west (W1-4), 4 from the south (S1-4), and 4 from the north (N1-4), and: 2 from the Caohai area (C1-2) as research sites. All environmental parameters including pH, ammonium (NH4+), total nitrogen (TN), total phosphorus (TP), chlorophyll a content (CHLA) were found to be insignificant (p > 0.05), except for chemical oxygen demand (COD) and transparency (T), which were found to be significant (p < 0.05). Alpha diversity indices including ACE, Chao1, Shannon, and Simpson showed non-significant differences (p > 0.05), indicating no variation in the richness of zooplankton communities at different locations of Dianchi Lake. However, principal coordinate analysis (PCoA) showed that most of the samples from East, West, and South groups were close to each other, showing more similarities among them, while Caohai and North group samples were distant from each other, showing more differences with other groups. Rotifera, Arthropoda, and Chordata were the top three phyla, while Keratella, Macrothrix, and Brachionus were the dominant genera. Mantel test analysis showed that COD and transparency were important environmental factors that shaped the Rotifera community structure of Dianchi Lake. In conclusion, this study provides insights on conserving the diversity of zooplankton communities in Dianchi Lake, especially by controlling COD and maintaining water transparency, in order to preserve its ecological resources and economic significance.

Using the Diversity, Taxonomic and Functional Attributes of a Zooplankton Community to Determine Lake Environmental Typology in the Natural Southern Boreal Lakes (Québec, Canada)

Herein, we used zooplankton as a study model for determining how biodiversity components as well as taxonomic and functional attributes reflect lake typology in the natural southern boreal lakes. We estimated the regional and local variation in zooplankton diversity and the community structure across a set of fourteen lakes within a national park. Regional diversity (γ diversity) accounted for 40 species including 20 rotifers, 10 cladocerans and 8 copepods. Local diversity (α diversity) averaged 15 species per lake. Spatial variation in β diversity was inversely related to spatial variation in α diversity. Inter-lake variation in zooplankton communities based on taxonomy, functional traits and biotic indices was explained by two major limnological gradients: namely lake trophic status and fish community. The community structure reflected a gradient of rotifer to calanoid copepod dominance in response to trophic status. Several key species of rotifers (Kellicottia longispina and Conochilus unicornis) and of small (Bosmina and Diaphanosoma birgei) or large (Daphnia catawba and Holopedium gibberum cf glacialis) cladocerans were good indicators of lake zooplankton typology, as in other boreal lakes. We distinguished two main groups of lakes: (1) oligotrophic lakes inhabited by brook trout and dominated by the calanoid copepods and (2) mesotrophic lakes inhabited by northern pike and dominated by rotifers. Overall, our study can help managers better define monitoring and conservation strategies for lake ecosystems in natural parks.

Do metals differentiate zooplankton communities in shallow and deep lakes affected by mining tailings? The case of the Fundão dam failure (Brazil)

The effects of exposure to mining tailings on water quality and biota of tropical lacustrine ecosystems remain poorly understood. We tested the hypothesis that after mining tailing spills, shallow lakes should retain higher metal concentrations in comparison with deep lakes, which might contribute to differentiating species sorting and community structure of zooplankton in both ecosystems. Surveys were performed in 6 Brazilian lakes affected by the Fundão dam failure from October 2018 to September 2019. The shallow lakes showed higher values of turbidity (19.4 ± 12.9 NTU), conductivity (846.5 ± 1727.1 μS.cm^-1), total organic carbon (11.6 ± 4.6 mg.L^-1), total nitrogen (2688.7 ± 2215.6 μg.L^-1), iron (2507.5 ± 726.9 μg.L^-1), aluminum (419.9 ± 166.5 μg.L^-1) and manganese (150.8 ± 146.2 μg.L^-1) and lower zooplankton richness (9.2 ± 3.2) compared to the deep lakes (13.4 ± 3.0), which showed higher cyanobacteria density (84.7 10³ ± 69.3 10³ cel.mL^-1). We recorded negative relationships between zooplankton richness and turbidity, conductivity, iron, zinc and vanadium, indicating that as well as morphometric characteristics of lakes (area and depth) have an important role in zooplankton richness, the coupling between metals and limnological variables represent decisive environmental filters for species sorting of zooplankton. The variation-partitioning analysis showed that limnological variables and metals explained zooplankton composition, highlighting that metals play major influence on zooplankton composition. We suggest that the shallowness of the lakes should had promoted often resuspension of mining tailings that caused increases in metal concentrations in water column. The results indicate that the shallow lakes presented higher vulnerability to mining tailings exposure than the deep lakes, which may have substantially contributed for differentiating zooplankton communities in both ecosystems. This study reveals the need for considering shallow lakes as priority target for conservation among freshwater ecosystems affected by mining tailings.

Spatio-temporal variation of zooplankton community structure in tropical urban waterbodies along trophic and urban gradients

The ecological impacts of urbanization and eutrophication on zooplankton communities in urban waterbodies have recently gained wide interest. Study findings vary across species and urban waterbodies. How the development of such changes affects the variation of biotic assemblages has only been explored to a limited extent in tropical urban lakes.

Spatial and temporal variations of zooplankton community structure in 11 urban waterbodies in the Klang Valley, Malaysia were investigated along trophic and urbanization gradients. Zooplankton and water quality samples were collected three times, between May and November 2017, from two different locations in each lake. All three main zooplankton groups (rotifera, copepoda, and cladocera) were recorded from the study areas throughout the sampling period. The zooplankton community structure, particularly with regard to rotifers and cladocerans, varied between lakes and seasons. Zooplankton diversity does not vary with lake size or distance from the city center but does vary with shoreline development index and urbanization impacts. The zooplankton populations were dominated by rotifers, mainly Brachionus angularis at all study sites during the study period followed by copepods and cladocerans. The total density of zooplankton was significantly highest (p < 0.05) in the hypereutrophic lakes and during the dry season. Zooplankton diversity and rotifer species richness were negatively correlated with total phosphorus (TP). Diversity increased with urbanization and shoreline development, with rotifers as a potential bioindicator of trophic state in urban tropical lakes, due to their close relationship with TP.

Key Drivers for Copepod Assemblages in a Eutrophic Coastal Brackish Lake

The copepod assemblages and abiotic parameters were investigated at 11 stations in a large coastal lake (Lake Manzalah, Nile Delta) from 2009–2010 in order to verify any impacts of eutrophication and salinity on the copepod species composition. The environmental conditions and the copepod assemblages appeared to have changed in comparison with previous studies, possibly because of increasing eutrophication and invasions of non-indigenous species (NIS). The aim of the present study was the identification of species which can be used as ecological indicators of high trophic status. Among the nine copepod species of Lake Manzalah, Acartia tonsa, Mesocyclops ogunnus, and Apocyclops panamensis were reported for the first time. Acartia tonsa, a well-known NIS for the Mediterranean, numerically dominated the copepod assemblages in some portions of the lake. The distribution of Acanthocyclops trajani and Thermocyclops consimilis was insensible to eutrophication because they can stand high levels of nutrients and hypoxia. Compared with previous reports, the copepod assemblage of Lake Manzalah was richer in species. The invasions of NIS, in addition to the heterogeneous progress of eutrophication in the lake, created an environmental mosaic with many species in total, but with single areas suitable for only a small number of them.

Wartime scars or reservoirs of biodiversity? The value of bomb crater ponds in aquatic conservation

Considering the ongoing loss of aquatic habitats, anthropogenic ponds are gaining importance as substitute habitats. It is therefore important to assess their functioning in comparison to their natural precursors. Here we assess the biodiversity value of sodic bomb crater ponds by comparing their gamma diversity to that of natural reference habitats, astatic soda pans, and assess their importance on the landscape level by studying alpha and beta diversity. We studied aquatic organisms ranging from algae to vertebrates in a dense cluster of 54 sodic bomb crater ponds in Central Europe. Despite the overall small area of the pond cluster, gamma diversity was comparable to that found in surveys of natural habitats that encompassed much wider spatial and temporal scales. We also found a considerable number of species shared with reference habitats, indicating that these anthropogenic habitats function as important refuge sites for several species that are associated with the endangered soda pans. Moreover, we found a number of regionally or worldwide rare species. Among the components of beta diversity, species replacement dominated community assembly. Individual ponds contributed similarly to beta diversity in terms of replacement, being equally important for maintaining high gamma diversity and emphasising the role of the pond network rather than individual ponds. This pattern was seen in all studied groups. Bomb crater ponds therefore acted as important contributors to aquatic biodiversity. Considering the tremendous losses of ponds throughout Europe, anthropogenic ponds should be taken into consideration in nature conservation, especially when occurring in pond networks.