Breeding performance of an apex predator, the peregrine falcon, across urban and rural landscapes

Blood transcriptome analysis of common kestrel nestlings living in urban and non-urban environments

Urbanisation is one of the main anthropogenic forms of land cover affecting an ever-increasing number of wild animals and their habitats. Physiological plasticity represents an important process through which animals can adjust to the novel conditions of anthropogenic environments. Relying on the analysis of gene expression, it is possible to identify the molecular responses to the habitat conditions and infer possible environmental factors that affect the organismal physiology. We have quantified for the first time the blood transcriptome of common kestrel (Falco tinnunculus) nestlings living in urban sites and compared it to the transcriptome of kestrel nestlings inhabiting rural and natural environments. We found mild differences in the expression of genes among sites, indicating adaptability or acclimation of the birds to the urban habitat. We identified 58 differentially expressed genes between urban and natural kestrels, and 12 differentially expressed genes between urban and rural kestrels. The most striking differences among sites involved inflammatory-immunological, metabolic, apoptosis, DNA repair and development genes. In particular, we found that (i) urban kestrel nestlings had higher expression of genes linked to inflammation, repair of DNA damage, or apoptosis than natural kestrel nestlings, and (ii) natural and rural kestrel nestlings had higher expression of genes linked to the development and activation of immune cells, type I interferon response, or major histocompatibility complex than urban kestrel nestlings. Finally, the KEGG enrichment analysis identified the insulin signalling as the main pathway that differed between natural and urban kestrel nestlings. This is one of a limited number of studies on vertebrates that revealed habitat-associated differences in the transcriptome. It paves the way for further in-depth studies on the links between physiological variation and habitat structure at different spatial and temporal scales.

Integument colouration and circulating carotenoids in relation to urbanisation in Eurasian kestrels (Falco tinnunculus)

Urbanisation is one of the biggest environmental challenges of our time, yet we still lack an integrative understanding of how cities affect behaviour, physiology and parasite susceptibility of free-living organisms. In this study, we focus on carotenoids, strictly dietary micronutrients that can either be used as yellow-red pigments, for integument colouration (signalling function), or as antioxidants, to strengthen the immune system (physiological function) in an urban predator, the Eurasian kestrel (Falco tinnunculus). Kestrels are specialised vole hunters but shift to avian prey in cities where diurnal rodents are not sufficiently available. This different foraging strategy might determine the quantity of carotenoids available. We measured integument colouration, circulating carotenoids in the blood and ectoparasite burden in kestrels along an urban gradient. Our results showed that nestlings that were raised in more urbanised areas displayed, unrelated to their ectoparasite burden, a paler integument colouration. Paler colours were furthermore associated with a lower concentration of circulating carotenoids. These findings support the hypothesis that the entire urban food web is carotenoid deprived and only prey of low quality with low carotenoid content is available (e.g. fewer carotenoids in urban trees, insects, small birds and finally kestrels). The alternative hypothesis that nestlings allocate carotenoids to reduce physiological stress and/or to cope with parasites rather than invest into colouration could not be supported. Our study adds to existing evidence that urban stressors negatively affect carotenoid production in urban areas, a deficiency that dissipate into higher trophic levels.

A global meta-analysis reveals higher variation in breeding phenology in urban birds than in their non-urban neighbours

Cities pose a major ecological challenge for wildlife worldwide. Phenotypic variation, which can result from underlying genetic variation or plasticity, is an important metric to understand eco-evolutionary responses to environmental change. Recent work suggests that urban populations might have higher levels of phenotypic variation than non-urban counterparts. This prediction, however, has never been tested across species nor over a broad geographical range. Here, we conducted a meta-analysis of the avian literature to compare urban versus non-urban means and variation in phenology (i.e. lay date) and reproductive effort (i.e. clutch size, number of fledglings). First, we show that urban populations reproduce earlier and have smaller broods than non-urban conspecifics. Second, we show that urban populations have higher phenotypic variation in laying date than non-urban populations. This result arises from differences between populations within breeding seasons, conceivably due to higher landscape heterogeneity in urban habitats. These findings reveal a novel effect of urbanisation on animal life histories with potential implications for species adaptation to urban environments (which will require further investigation). The higher variation in phenology in birds subjected to urban disturbance could result from plastic responses to a heterogeneous environment, or from higher genetic variation in phenology, possibly linked to higher evolutionary potential.

Diet of Mesozoic toothed birds (Longipterygidae) inferred from quantitative analysis of extant avian diet proxies

Background

Birds are key indicator species in extant ecosystems, and thus we would expect extinct birds to provide insights into the nature of ancient ecosystems. However, many aspects of extinct bird ecology, particularly their diet, remain obscure. One group of particular interest is the bizarre toothed and long-snouted longipterygid birds. Longipterygidae is the most well-understood family of enantiornithine birds, the dominant birds of the Cretaceous period. However, as with most Mesozoic birds, their diet remains entirely speculative.

Results

To improve our understanding of longipterygids, we investigated four proxies in extant birds to determine diagnostic traits for birds with a given diet: body mass, claw morphometrics, jaw mechanical advantage, and jaw strength via finite element analysis. Body mass of birds tended to correspond to the size of their main food source, with both carnivores and herbivores splitting into two subsets by mass: invertivores or vertivores for carnivores, and granivores + nectarivores or folivores + frugivores for herbivores. Using claw morphometrics, we successfully distinguished ground birds, non-raptorial perching birds, and raptorial birds from one another. We were unable to replicate past results isolating subtypes of raptorial behaviour. Mechanical advantage was able to distinguish herbivorous diets with particularly high values of functional indices, and so is useful for identifying these specific diets in fossil taxa, but overall did a poor job of reflecting diet. Finite element analysis effectively separated birds with hard and/or tough diets from those eating foods which are neither, though could not distinguish hard and tough diets from one another. We reconstructed each of these proxies in longipterygids as well, and after synthesising the four lines of evidence, we find all members of the family but Shengjingornis (whose diet remains inconclusive) most likely to be invertivores or generalist feeders, with raptorial behaviour likely in Longipteryx and Rapaxavis.

Conclusions

This study provides a 20% increase in quantitatively supported fossil bird diets, triples the number of diets reconstructed in enantiornithine species, and serves as an important first step in quantitatively investigating the origins of the trophic diversity of living birds. These findings are consistent with past hypotheses that Mesozoic birds occupied low trophic levels.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12915-022-01294-3.

Fine-scale habitat selection of a small mammalian urban adapter: the West European hedgehog (Erinaceus europaeus)

Understanding patterns of habitat selection and factors affecting space use is fundamental in animal conservation. In urban landscapes, such knowledge can be used to advise householders on how best to manage their gardens for wildlife. In this study, we tracked 28 West European hedgehogs (Erinaceus europaeus), a species of conservation concern in the UK, in an area of high-density housing using radio and GPS tags to quantify patterns of habitat use and identify factors associated with the proportion of time spent in individual gardens. Both males and females exhibited a preference for residential gardens, but there were subtle differences between the sexes in relation to house type and front versus back gardens. Hedgehogs spent significantly more time in gardens where artificial food was provided, where a compost heap was present, if foxes (Vulpes vulpes) were infrequent visitors, if it rained overnight and as daylength increased (i.e., shorter nights); garden use was not significantly associated with variables potentially likely to reflect invertebrate prey abundance. These data suggest that the primary positive action that householders can undertake for urban hedgehogs is providing supplementary food. However, householders often feed hedgehogs after they know they are already visiting their garden. Consequently, the presence of artificial food may make it difficult to identify other important influences affecting garden use. Finally, we report that a GPS fix acquisition rate < 60% likely had no major effect on the results of our analyses, but should be a consideration in future studies using this technique on this species and in this habitat.

A comprehensive overview of the effects of urbanisation on sexual selection and sexual traits

Urbanisation can affect mating opportunities and thereby alter inter- and intra-sexual selection pressures on sexual traits. Biotic and abiotic urban conditions can influence an individual's success in pre- and post-copulatory mating, for example through impacts on mate attraction and mate preference, fertilisation success, resource competition or rival interactions. Divergent sexual selection pressures can lead to differences in behavioural, physiological, morphological or life-history traits between urban and non-urban populations, ultimately driving adaptation and speciation. Most studies on urban sexual selection and mating interactions report differences between urban and non-urban populations or correlations between sexual traits and factors associated with increased urbanisation, such as pollution, food availability and risk of predation and parasitism. Here we review the literature on sexual selection and sexual traits in relation to urbanisation or urban-associated conditions. We provide an extensive list of abiotic and biotic factors that can influence processes involved in mating interactions, such as signal production and transmission, mate choice and mating opportunities. We discuss all relevant data through the lens of two, non-mutually exclusive theories on sexual selection, namely indicator and sensory models. Where possible, we indicate whether these models provide the same or different predictions regarding urban-adapted sexual signals and describe different experimental designs that can be useful for the different models as well as to investigate the drivers of sexual selection. We argue that we lack a good understanding of: (i) the factors driving urban sexual selection; (ii) whether reported changes in traits result in adaptive benefits; and (iii) whether these changes reflect a short-term ecological, or long-term evolutionary response. We highlight that urbanisation provides a unique opportunity to study the process and outcomes of sexual selection, but that this requires a highly integrative approach combining experimental and observational work.

Breeding habitat selection of urban peregrine falcons (Falco peregrinus) in London

Understanding habitat selection by individual animals within their home range is crucial to facilitating their conservation. Peregrine falcon (Falco peregrinus) populations are increasingly urbanised, but little is known about their urban habitat use. In this study, we analysed the breeding habitat selection of peregrine falcons in London, United Kingdom, based on nest site locations identified through records of public sightings submitted to an online database between 2003 and 2018. We found peregrines displayed a preference for nesting in proximity to waterbodies, built-up areas and public parks and gardens, while wooded, agricultural and allotments areas were least preferred. We hypothesise that peregrines seek contrasting topography that proves advantageous for hunting in the vicinity of their nests, resulting in their selection of breeding sites within tall buildings that are adjacent to suitable foraging areas. From these findings, we conclude that (i) social drivers such as demand for green spaces and waterbodies near buildings shape peregrine nesting opportunities in the city and (ii) for urban planning to support conservation, we need further understanding of how each type of greenspace may be used differentially by raptors.

The Biological Deserts Fallacy: Cities in Their Landscapes Contribute More than We Think to Regional Biodiversity

Cities are both embedded within and ecologically linked to their surrounding landscapes. Although urbanization poses a substantial threat to biodiversity, cities also support many species, some of which have larger populations, faster growth rates, and higher productivity in cities than outside of them. Despite this fact, surprisingly little attention has been paid to the potentially beneficial links between cities and their surroundings. We identify five pathways by which cities can benefit regional ecosystems by releasing species from threats in the larger landscape, increasing regional habitat heterogeneity and genetic diversity, acting as migratory stopovers, preadapting species to climate change, and enhancing public engagement and environmental stewardship. Increasing recognition of these pathways could help cities identify effective strategies for supporting regional biodiversity conservation and could provide a science-based platform for incorporating biodiversity alongside other urban greening goals.

Superfrogs in the city: 150 year impact of urbanization and agriculture on the European Common Frog

Despite growing pressure on biodiversity deriving from increasing anthropogenic disturbances, some species successfully persist in altered ecosystems. However, these species' characteristics and thresholds, as well as the environmental frame behind that process are usually unknown. We collected data on body size, fluctuating asymmetry (FA), as well as nitrogen stable isotopes (δ¹⁵ N) from museum specimens of the European Common Frog, Rana temporaria, all originating from the Berlin-Brandenburg area, Germany, in order to test: (a) if specimens have changed over the last 150 years (1868-2018); and (b) if changes could be attributed to increasing urbanization and agricultural intensity. We detected that after the Second World War, frogs were larger than in pre-war Berlin. In rural Brandenburg, we observed no such size change. FA analysis revealed a similar tendency with lower levels in Berlin after the war and higher levels in Brandenburg. Enrichment of δ¹⁵ N decreased over time in both regions but was generally higher and less variable in sites with agricultural land use. Frogs thus seem to encounter favorable habitat conditions after pollution in postwar Berlin improved, but no such tendencies were observable in the predominantly agricultural landscape of Brandenburg. Urbanization, characterized by the proportion of built-up area, was not the main associated factor for the observed trait changes. However, we detected a relationship with the amount of urban greenspace. Our study exemplifies that increasing urbanization must not necessarily worsen conditions for species living in urban habitats. The Berlin example demonstrates that public parks and other urban greenspaces have the potential to serve as suitable refuges for some species. These findings underline the urgency of establishing, maintaining, and connecting such habitats, and generally consider their importance for future urban planning.

Nest boxes buffer the effects of climate on breeding performance in an African urban raptor

As the world’s human population increases, transformation of natural landscapes into urban habitats continues to increase. In Africa, rates of human population growth and urbanisation are among the highest in the world, but the impacts of these processes on the continent’s biodiversity remain largely unexplored. Furthermore, the effects of ongoing anthropogenic climate change are likely to be severe and to interact with urbanisation. Some organisms appear resilient to urbanisation, and even proliferate in human-modified environments. One such species is the peregrine falcon Falco peregrinus in Cape Town, South Africa. Using a long-term data set (1989–2014), we investigate the relationship between breeding attempts, timing of breeding and breeding performance under varying weather conditions. Exploring these issues along an urbanisation gradient, we focus on the role of artificially provided nest boxes, and their capacity to buffer against extreme weather events. Pairs in more urbanised areas, and particularly those in nest boxes, were more likely to breed and to commence breeding earlier. Additionally, pairs using nest boxes were more likely to breed in years with higher rainfall. Warm and dry weather conditions generally advanced the timing of breeding, although this relationship with weather was not seen for urban pairs using nest boxes. Furthermore, weather did not impact breeding performance directly (breeding success and fledged brood size), but timing of breeding did, with earlier breeders producing more fledglings. Our study shows that falcons breeding in specially provided nest boxes were less sensitive to local weather dynamics than pairs using more natural nest sites. This has important implications as it suggests that the managed provision of such nesting sites can help this key urban species to cope with extreme weather events, which are predicted to increase with climate change.