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Hu N, Xiao F, Zhang D, Hu R, Xiong R, Lv W, Yang Z, Tan W, Yu H, Ding D, Yan Q, He Z. Organophosphorus mineralizing-Streptomyces species underpins uranate immobilization and phosphorus availability in uranium tailings. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:134975. [PMID: 38908177 DOI: 10.1016/j.jhazmat.2024.134975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 06/11/2024] [Accepted: 06/18/2024] [Indexed: 06/24/2024]
Abstract
Phosphate-solubilizing bacteria (PSB) are important but often overlooked regulators of uranium (U) cycling in soil. However, the impact of PSB on uranate fixation coupled with the decomposition of recalcitrant phosphorus (P) in mining land remains poorly understood. Here, we combined gene amplicon sequencing, metagenome and metatranscriptome sequencing analysis and strain isolation to explore the effects of PSB on the stabilization of uranate and P availability in U mining areas. We found that the content of available phosphorus (AP), carbonate-U and Fe-Mn-U oxides in tailings was significantly (P < 0.05) higher than their adjacent soils. Also, organic phosphate mineralizing (PhoD) bacteria (e.g., Streptomyces) and inorganic phosphate solubilizing (gcd) bacteria (e.g., Rhodococcus) were enriched in tailings and soils, but only organic phosphate mineralizing-bacteria substantially contributed to the AP. Notably, most genes involved in organophosphorus mineralization and uranate resistance were widely present in tailings rather than soil. Comparative genomics analyses supported that organophosphorus mineralizing-Streptomyces species could increase soil AP content and immobilize U(VI) through organophosphorus mineralization (e.g., PhoD, ugpBAEC) and U resistance related genes (e.g., petA). We further demonstrated that the isolated Streptomyces sp. PSBY1 could enhance the U(VI) immobilization mediated by the NADH-dependent ubiquinol-cytochrome c reductase (petA) through decomposing organophosphorous compounds. This study advances our understanding of the roles of PSB in regulating the fixation of uranate and P availability in U tailings.
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Affiliation(s)
- Nan Hu
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Fangfang Xiao
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Dandan Zhang
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Science, State Key Laboratory for Biocontrol, Sun Yat-sen University, Zhuhai 519080, China
| | - Ruiwen Hu
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Rui Xiong
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Wenpan Lv
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Zhaolan Yang
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Wenfa Tan
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Huang Yu
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China.
| | - Dexin Ding
- Key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy, University of South China, Hengyang 421001, China
| | - Qingyun Yan
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Science, State Key Laboratory for Biocontrol, Sun Yat-sen University, Zhuhai 519080, China
| | - Zhili He
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Marine Science, State Key Laboratory for Biocontrol, Sun Yat-sen University, Zhuhai 519080, China
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Chouyia FE, Ventorino V, Pepe O. Diversity, mechanisms and beneficial features of phosphate-solubilizing Streptomyces in sustainable agriculture: A review. FRONTIERS IN PLANT SCIENCE 2022; 13:1035358. [PMID: 36561447 PMCID: PMC9763937 DOI: 10.3389/fpls.2022.1035358] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
Currently, the use of phosphate (P) biofertilizers among many bioformulations has attracted a large amount of interest for sustainable agriculture. By acting as growth promoters, members of the Streptomyces genus can positively interact with plants. Several studies have shown the great potential of this bacterial group in supplementing P in a soluble, plant-available form by several mechanisms. Furthermore, some P-solubilizing Streptomyces (PSS) species are known as plant growth-promoting rhizobacteria that are able to promote plant growth through other means, such as increasing the availability of soil nutrients and producing a wide range of antibiotics, phytohormones, bioactive compounds, and secondary metabolites other than antimicrobial compounds. Therefore, the use of PSS with multiple plant growth-promoting activities as an alternative strategy appears to limit the negative impacts of chemical fertilizers in agricultural practices on environmental and human health, and the potential effects of these PSS on enhancing plant fitness and crop yields have been explored. However, compared with studies on the use of other gram-positive bacteria, studies on the use of Streptomyces as P solubilizers are still lacking, and their results are unclear. Although PSS have been reported as potential bioinoculants in both greenhouse and field experiments, no PSS-based biofertilizers have been commercialized to date. In this regard, this review provides an overview mainly of the P solubilization activity of Streptomyces species, including their use as P biofertilizers in competitive agronomic practices and the mechanisms through which they release P by solubilization/mineralization, for both increasing P use efficiency in the soil and plant growth. This review further highlights and discusses the beneficial association of PSS with plants in detail with the latest developments and research to expand the knowledge concerning the use of PSS as P biofertilizers for field applications by exploiting their numerous advantages in improving crop production to meet global food demands.
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Affiliation(s)
- Fatima Ezzahra Chouyia
- Department of Biology, Faculty of Sciences and Techniques, Hassan II University, Casablanca, Morocco
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Valeria Ventorino
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
| | - Olimpia Pepe
- Department of Agricultural Sciences, University of Naples Federico II, Naples, Italy
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Romano-Armada N, Yañez-Yazlle MF, Irazusta VP, Rajal VB, Moraga NB. Potential of Bioremediation and PGP Traits in Streptomyces as Strategies for Bio-Reclamation of Salt-Affected Soils for Agriculture. Pathogens 2020; 9:E117. [PMID: 32069867 PMCID: PMC7169405 DOI: 10.3390/pathogens9020117] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Revised: 01/31/2020] [Accepted: 02/08/2020] [Indexed: 12/11/2022] Open
Abstract
Environmental limitations influence food production and distribution, adding up to global problems like world hunger. Conditions caused by climate change require global efforts to be improved, but others like soil degradation demand local management. For many years, saline soils were not a problem; indeed, natural salinity shaped different biomes around the world. However, overall saline soils present adverse conditions for plant growth, which then translate into limitations for agriculture. Shortage on the surface of productive land, either due to depletion of arable land or to soil degradation, represents a threat to the growing worldwide population. Hence, the need to use degraded land leads scientists to think of recovery alternatives. In the case of salt-affected soils (naturally occurring or human-made), which are traditionally washed or amended with calcium salts, bio-reclamation via microbiome presents itself as an innovative and environmentally friendly option. Due to their low pathogenicity, endurance to adverse environmental conditions, and production of a wide variety of secondary metabolic compounds, members of the genus Streptomyces are good candidates for bio-reclamation of salt-affected soils. Thus, plant growth promotion and soil bioremediation strategies combine to overcome biotic and abiotic stressors, providing green management options for agriculture in the near future.
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Affiliation(s)
- Neli Romano-Armada
- Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; (N.R.-A.); (M.F.Y.-Y.); (V.P.I.); (N.B.M.)
- Facultad de Ingeniería, UNSa, Salta 4400, Argentina
| | - María Florencia Yañez-Yazlle
- Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; (N.R.-A.); (M.F.Y.-Y.); (V.P.I.); (N.B.M.)
- Facultad de Ciencias Naturales, UNSa, Salta 4400, Argentina
| | - Verónica P. Irazusta
- Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; (N.R.-A.); (M.F.Y.-Y.); (V.P.I.); (N.B.M.)
- Facultad de Ciencias Naturales, UNSa, Salta 4400, Argentina
| | - Verónica B. Rajal
- Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; (N.R.-A.); (M.F.Y.-Y.); (V.P.I.); (N.B.M.)
- Facultad de Ingeniería, UNSa, Salta 4400, Argentina
- Singapore Centre for Environmental Life Sciences Engineering (SCELSE), School of Biological Sciences, Nanyang Technological University, Singapore 639798, Singapore
| | - Norma B. Moraga
- Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; (N.R.-A.); (M.F.Y.-Y.); (V.P.I.); (N.B.M.)
- Facultad de Ingeniería, UNSa, Salta 4400, Argentina
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Puppala KR, Bhavsar K, Sonalkar V, Khire JM, Dharne MS. Characterization of novel acidic and thermostable phytase secreting Streptomyces sp. (NCIM 5533) for plant growth promoting characteristics. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2019.101020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Ghorbani Nasrabadi R, Greiner R, Yamchi A, Nourzadeh Roshan E. A novel purple acid phytase from an earthworm cast bacterium. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2018; 98:3667-3674. [PMID: 29266239 DOI: 10.1002/jsfa.8845] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2017] [Revised: 12/12/2017] [Accepted: 12/13/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Phytases are a diverse group of enzymes initiating the dephosphorylation of phytate. Phytate is considered as an anti-nutritional compound because of its capability to chelate nutrients such as Fe2+ , Zn2+ , Mg2+ , and Ca2+ . In this study, several bacterial isolates obtained from earthworm casts were evaluated for their phytate degrading capability. Enzymatic properties and the sequence of the corresponding phytase-encoding gene of the selected isolate were determined. RESULTS The phytase exhibited its highest activity at pH 4.0 and was stable from pH 3 up to pH 9. The temperature optimum was determined to be 65 °C. The strongest inhibitors of enzymatic activity were identified as vanadate, Cu2+ , and Zn2+ . High-performance ion chromatography analysis of enzymatic phytate dephosphorylation revealed that the first dephosphorylation product was d/l-myo-inositol(1,2,3,4,5)pentakisphosphate. CONCLUSION Owing to its enzymatic properties, such as tolerance to tartrate and the presence of the consensus motifs PDTVY, GNHE, DLG, VLFH, and GHDH, this phytase could be classified as a purple acid phytase. To the best of our knowledge, this is the first report describing a bacterial purple acid phytase. © 2017 Society of Chemical Industry.
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Affiliation(s)
- Reza Ghorbani Nasrabadi
- Department of Soil Science, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Ralf Greiner
- Department of Food Technology and Bioprocess Engineering, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Karlsruhe, Germany
| | - Ahad Yamchi
- Department of Plant Breeding and Biotechnology, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
| | - Elham Nourzadeh Roshan
- Department of Soil Science, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran
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Cell Aggregating Temperament and Biopotency of Cultivable Indigenous Actinobacterial Community Profile in Chicken (Gallus gallus domesticus) Gut System. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2018. [DOI: 10.1007/s13369-018-3083-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Bandyopadhyay D, Das K, Sen SK. Purification of thermo and acid tolerant extracellular phytase from a new soil isolate of Amycolatopsis vancoresmycina S-12. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2017.08.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Isolation and molecular characterization of phytase producing actinobacteria of fruit orchard. THE NUCLEUS 2017. [DOI: 10.1007/s13237-017-0205-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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Boukhris I, Farhat-Khemakhem A, Bouchaala K, Virolle MJ, Chouayekh H. Cloning and characterization of the first actinomycete β-propeller phytase fromStreptomycessp. US42. J Basic Microbiol 2016; 56:1080-1089. [DOI: 10.1002/jobm.201500760] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 04/11/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Ines Boukhris
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS; University Paris-Sud; Orsay France
| | - Ameny Farhat-Khemakhem
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
| | - Kameleddine Bouchaala
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
| | - Marie-Joëlle Virolle
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS; University Paris-Sud; Orsay France
| | - Hichem Chouayekh
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
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Bajaj BK, Wani MA. Purification and characterization of a novel phytase fromNocardiasp. MB 36. BIOCATAL BIOTRANSFOR 2015. [DOI: 10.3109/10242422.2015.1083014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Boukhris I, Dulermo T, Chouayekh H, Virolle MJ. Evidence for the negative regulation of phytase gene expression inStreptomyces lividansandStreptomyces coelicolor. J Basic Microbiol 2015; 56:59-66. [DOI: 10.1002/jobm.201500417] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2015] [Accepted: 08/29/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Ines Boukhris
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS; University Paris-Sud; Orsay France
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
| | - Thierry Dulermo
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS; University Paris-Sud; Orsay France
| | - Hichem Chouayekh
- Laboratory of Microorganisms and Biomolecules, Centre of Biotechnology of Sfax; University of Sfax; Sfax Tunisia
| | - Marie-Joëlle Virolle
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS; University Paris-Sud; Orsay France
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Abstract
A focused platform for phytase bio-processing and application oriented research will help in developing an integrated technological solution to phytase production.
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Affiliation(s)
- K. Bhavsar
- NCIM Resource Center
- National Chemical Laboratory
- Pune 411008, India
| | - J. M. Khire
- NCIM Resource Center
- National Chemical Laboratory
- Pune 411008, India
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