Biosorption of lead phosphates by lead-tolerant bacteria as a mechanism for lead immobilization

Molecular and eco-physiological responses of soil-borne lead (Pb2+)-resistant bacteria for bioremediation and plant growth promotion under lead stress

Lead (Pb) is the 2nd known portentous hazardous substance after arsenic (As). Being highly noxious, widespread, non-biodegradable, prolonged environmental presence, and increasing accumulation, particularly in arable land, Pb pollution has become a serious global health concern requiring urgent remediation. Soil-borne, indigenous microbes from Pb-polluted sites have evolved diverse resistance strategies, involving biosorption, bioprecipitation, biomineralization, biotransformation, and efflux mechanisms, under continuous exposure to Pb in human-impacted surroundings. These strategies employ a wide range of functional bioligands to capture Pb and render it inaccessible for leaching. Recent breakthroughs in molecular technology and understanding of lead resistance mechanisms offer the potential for utilizing microbes as biological tools in environmental risk assessment. Leveraging the specific affinity and sensitivity of bacterial regulators to Pb2+ ions, numerous lead biosensors have been designed and deployed worldwide to monitor Pb bioavailability in contaminated sites, even at trace levels. Besides, the ongoing degradation of croplands due to Pb pollution poses a significant challenge to meet the escalating global food demands. The accumulation of Pb in plant tissues jeopardizes both food safety and security while severely impacting plant growth. Exploring Pb-resistant plant growth-promoting rhizobacteria (PGPR) presents a promising sustainable approach to agricultural practices. The active associations of PGPR with host plants have shown enhancements in plant biomass and stress alleviation under Pb influence. They thus serve a dual purpose for plants grown in Pb-contaminated areas. This review aims to offer a comprehensive understanding of the role played by Pb-resistant soil-borne indigenous bacteria in expediting bioremediation and improving the growth of Pb-challenged plants essential for potential field application, thus broadening prospects for future research and development.

Bioremediation of heavy metals polluted environment and decolourization of black liquor using microbial biofilms

BACKGROUND

With increased urbanization and industrialization, modern life has led to an anthropogenic impact on the biosphere. Heavy metals pollution and pollutants from black liquor (BL) have caused severe effects on environment and living organisms. Bacterial biofilm has potential to remediate heavy metals and remove BL from the environment. Hence, this study was planned to investigate the potential of microbial biofilms for the bioremediation of heavy metals and BL polluted environments.

METHODS AND RESULTS

Eleven biofilm forming bacterial strains (SB1, SB2, SC1, AF1, 5A, BC-1, BC-2, BC-3, BC-4, BC-5 and BC-6) were isolated and identified upto species level via 16S rRNA gene sequencing. Biofilm strains belonging to Bacillus and Lysinibacillus sphaericus were used to remediate heavy metals (Pb, Ni, Mn, Zn, Cu, and Co). Atomic absorption spectroscopy showed significantly high (P ≤ 0.05) bioremediation potential by L. sphaericus biofilm (1462.0 ± 0.67 µgmL^-1) against zinc (Zn). Similarly, Pseudomonas putida biofilm significantly (P ≤ 0.05) decolourized (65.1%) BL. Fourier transform infrared (FTIR) analysis of treated heavy metals showed the shifting of major peaks (1637 & 1629-1647, 1633 & 1635-1643, and 1638-1633 cm^-1) corresponding to specific amide groups due to C = O stretching.

CONCLUSION

The study suggested that biofilm of the microbial flora from tanneries and pulp paper effluents possesses a strong potential for heavy metals bioremediation and BL decolourization. To our knowledge, this is the first report showing promising biofilm remediation potential of bacterial flora of tanneries and pulp-paper effluent from Kasur and Sheikhupura, Punjab, Pakistan, against heavy metals and BL.

Bacillus megaterium HgT21: a Promising Metal Multiresistant Plant Growth-Promoting Bacteria for Soil Biorestoration

The environmental deterioration produced by heavy metals derived from anthropogenic activities has gradually increased. The worldwide dissemination of toxic metals in crop soils represents a threat for sustainability and biosafety in agriculture and requires strategies for the recovery of metal-polluted crop soils. The biorestoration of metal-polluted soils using technologies that combine plants and microorganisms has gained attention in recent decades due to the beneficial and synergistic effects produced by its biotic interactions. In this context, native and heavy metal-resistant plant growth-promoting bacteria (PGPB) play a crucial role in the development of strategies for sustainable biorestoration of metal-contaminated soils. In this study, we present a genomic analysis and characterization of the rhizospheric bacterium Bacillus megaterium HgT21 isolated from metal-polluted soil from Zacatecas, Mexico. The results reveal that this autochthonous bacterium contains an important set of genes related to a variety of operons associated with mercury, arsenic, copper, cobalt, cadmium, zinc and aluminum resistance. Additionally, halotolerance-, beta-lactam resistance-, phosphate solubilization-, and plant growth-promotion-related genes were identified. The analysis of resistance to metal ions revealed resistance to mercury (HgII+), arsenate [AsO4]³-, cobalt (Co2+), zinc (Zn2+), and copper (Cu2+). Moreover, the ability of the HgT21 strain to produce indole acetic acid (a phytohormone) and promote the growth of Arabidopsis thaliana seedlings in vitro was also demonstrated. The genotype and phenotype of Bacillus megaterium HgT21 reveal its potential to be used as a model of both plant growth-promoting and metal multiresistant bacteria. IMPORTANCE Metal-polluted environments are natural sources of a wide variety of PGPB adapted to cope with toxic metal concentrations. In this work, the bacterial strain Bacillus megaterium HgT21 was isolated from metal-contaminated soil and is proposed as a model for the study of metal multiresistance in spore-forming Gram-positive bacteria due to the presence of a variety of metal resistance-associated genes similar to those encountered in the metal multiresistant Gram-negative Cupriavidus metallidurans CH34. The ability of B. megaterium HgT21 to promote the growth of plants also makes it suitable for the study of plant-bacteria interactions in metal-polluted environments, which is key for the development of techniques for the biorestoration of metal-contaminated soils used for agriculture.

Effects of Pb-, Cd-resistant bacterium Pantoea sp. on growth, heavy metal uptake and bacterial communities in oligotrophic growth substrates of Lolium multiflorum Lam

Phosphate-solubilizing bacteria (PSB) can accelerate phytoremediation, especially in those fertilized soils. However, PSB function in oligotrophic growth substrates remains poorly studied. In this study, we isolated lead (Pb)- and cadmium (Cd)-resistant PSB from contaminated sandy soil at an abandoned lubricant plant. The isolated Pantoea sp. PP4 (PP4 hereafter) can produce organic acid and IAA (Indole-3-acetic acid) and dissolve up to 238 mg/L of inorganic phosphate Ca2(PO4)3, exhibiting biosorption capability for Pb and bioprecipitation for Pb and Cd. In the sand pot experiment, inoculation of PP4 increased the accumulation of Pb and Cd in Lolium multiflorum Lam. by 28.9% and 95.5%, respectively, and increased the available phosphorous in oligotrophic river sand by 30.8% (P < 0.05). Meanwhile, the growth of Lolium multiflorum Lam. was also stimulated, resulting in 89.2%, 57.1%, 184.6%, and 28.5% increase in fresh weight, dry weight, root length, and shoot length, respectively. NMDS analysis showed that the bacterial communities in river sand were more clustered after inoculation with PP4. These results indicated that the application of Pantoea sp. PP4 can facilitate the phytoremediation of Pb and Cd in oligotrophic growth substrates, forming a convergent bacterial community. Our findings highlighted the importance of identifying ideal PSB to improve phytoremediation efficiency in oligotrophic environments.

Heavy Metal–Resistant Plant Growth–Promoting Citrobacter werkmanii Strain WWN1 and Enterobacter cloacae Strain JWM6 Enhance Wheat (Triticum aestivum L.) Growth by Modulating Physiological Attributes and Some Key Antioxidants Under Multi-Metal Stress

Due to wastewater irrigation, heavy metal (HM) exposure of agricultural soils is a major limiting factor for crop productivity. Plant growth–promoting bacteria (PGPB) may lower the risk of HM toxicity and increase crop yield. In this context, we evaluated two HM-resistant PGPB strains, i.e., Citrobacter werkmanii strain WWN1 and Enterobacter cloacae strain JWM6 isolated from wastewater-irrigated agricultural soils, for their efficacy to mitigate HM (Cd, Ni, and Pb) stress in a pot experiment. Increasing concentrations (0, 50, 100, and 200 ppm) of each HM were used to challenge wheat plants. Heavy metal stress negatively affected wheat growth, biomass, and physiology. The plants under elevated HM concentration accumulated significantly higher amounts of heavy metals (HMs) in shoots and roots, resulting in increased oxidative stress, which was evident from increased malondialdehyde (MDA) content in roots and shoots. Moreover, alterations in antioxidants like superoxide dismutase (SOD), peroxidase (POD), ascorbate peroxidase (APX), and catalase (CAT) were observed in plants under HM stress. The severity of damage was more pronounced with rising HM concentration. However, inoculating wheat with Citrobacter werkmanii strain WWN1 and Enterobacter cloacae strain JWM6 (107 CFU ml–1) improved plant shoot length (11–42%), root length (19–125%), fresh weight (41–143%), dry weight (65–179%), and chlorophyll a (14%-24%) and chlorophyll b content (2–24%) under HM stress. Citrobacter werkmanii strain WWN1 and Enterobacter cloacae strain JWM6 either alone or in co-inoculation enhanced the antioxidant enzyme activity, which may lower oxidative stress in plants. However, seeds treated with the bacterial consortium showed an overall better outcome in altering oxidative stress and decreasing HM accumulation in wheat shoot and root tissues. Fourier transform infrared spectroscopy indicated the changes induced by HMs in functional groups on the biomass surface that display effective removal of HMs from aqueous medium using PGPB. Thus, the studied bacterial strains may have adequate fertilization and remediation potential for wheat cultivated in wastewater-irrigated soils. However, molecular investigation of mechanisms adopted by these bacteria to alleviate HM stress in wheat is required to be conducted.

Bacterial strains found in the soils of a municipal solid waste dumping site facilitated phosphate solubilization along with cadmium remediation

Phosphate solubilizing bacteria (PSB) that can withstand high cadmium (Cd) stress is a desired combination for bioremediation. This study evaluated the Cd bioremediation potential of four PSB strains isolated from the contaminated soils of a municipal solid waste (MSW) discarding site (Guwahati, India). PSB strains were cultured in Pikovskaya (PVK) media, which led to higher acid phosphatase (ACP) activity and the release of organic acid. Optical density (OD) measurements were performed to determine the growth pattern of PSB; furthermore, Cd uptake by PSB was evaluated using infrared spectroscopy (IR) and X-Ray Diffraction (XRD) analyses. The 16S rRNA taxonomic analysis revealed that all the four promising PSB strains belonged to either Bacillus sp. or Enterobacter sp. One strain (SM_SS8) demonstrated higher tolerance towards Cd (up to 100 mg L^-1). Flow cytometry analysis revealed 70.92%, 46.93% and 20.4% viability of SM_SS8 in 10, 50 and 100 mg L^-1, respectively in PVK media containing Cd. This study has therefore substantiated the bioremediation of Cd from polluted soil by the PSB isolates. Thus, experimental results revealed a potential combo benefit, phosphate solubilization along with Cd remediation.

Lead removal from water by a newly isolated Geotrichum candidum LG-8 from Tibet kefir milk and its mechanism

In this study, a yeast-like fungal strain (LG-8), newly isolated from spontaneous Tibet kefir in China, was identified as Geotrichum candidum on the basis of its morphological characteristics and ITS5.8S gene sequence. Interestingly, the strain was able to remove more than 99% of Pb²⁺ ions in water at low concentrations and a maximum of 325.68 mg lead/g of dry biomass. The results of selective passivation experiments suggested that phosphate, amide and carboxyl groups on the cell wall contributed to lead removal. Scanning electron microscopy (SEM) photomicrographs revealed that large amounts of micro/nanoparticles formed on the cell wall, and energy dispersive X-ray spectroscopy (EDX) results further indicated the presence of lead along with phosphorus and chlorine in the particles. Furthermore, the results of Fourier transform infrared spectroscopy (FTIR) and X-ray diffraction (XRD) analyses revealed that the particles were composed of pyromorphite [Pb₅(PO4)₃Cl], a highly insoluble lead mineral. Importantly, this is the first time that the biomineralization of lead into pyromorphite has been observed as the major mechanism for lead removal by G. candidum LG-8, providing a new strategy to scavenge heavy metals from aquatic environment in an eco-friendly manner.

The Synthesis of PbS NPs and Biosorption of Pb(II) by Shinella Zoogloeoides PQ7 in Aqueous Conditions

Increasing heavy metal pollution in water continues to endanger human health. The genus Shinella has potential for heavy metal bioremediation but has rarely been studied. In this study, we report that Shinella zoogloeoides PQ7 turns black in the presence of lead ions. Transmission electron microscopy (TEM), Scanning electron microscopy–energy dispersive X-ray spectroscopy (SEM–EDS), X-ray photoelectron spectroscopy (XPS) and X-ray diffraction (XRD) indicated that PbS nanoparticles (NPs) were synthesized by PQ7. Moreover, PQ7 was used as a biosorbent to remove Pb(II) from aqueous solutions. Biosorption performance was evaluated in terms of contact time, pH, biomass dosage and initial Pb(II) concentration. The equilibrium and kinetic data were consistent with the Freundlich isotherm model (R2 = 0.986) and pseudo-second-order model (R2 = 0.977), respectively. The maximum (qmax) Pb(II) adsorption reached 222.22 mg/g, which was higher than that of other bacteria reported in previous literature. SEM–EDS, XRD and Fourier transform infrared (FTIR) analyses also confirmed the adsorption of Pb(II) by the PQ7 cells. In conclusion, PQ7 is a promising strain in removing and recovering Pb(II) from wastewater.

Phosphate rock solubilization and the potential for lead immobilization by a phosphate-solubilizing bacterium (Pseudomonas sp.)

Lead (Pb) pollution is getting more and more serious in phosphate mining wastelands recently. However, seldom studies focused on the bioremediation of Pb pollution in phosphate mining wastelands by phosphate-solubilizing bacterium (PSB). In this study, a PSB named LA with high Pb tolerance was isolated from a phosphate mining wasteland. Based on its cell morphology, physiology, and phylogenetic analysis, it was identified as Pseudomonas sp. Its capabilities to solubilize mid-low-grade phosphate rock (PR) and immobilize Pb were assessed in this study. It was found that LA could effectively solubilize PR on PKO culture medium and release soluble phosphate in the culture medium. PR solubilization and Pb immobilization were investigated at different initial Pb concentrations and pH levels. The results showed that soluble phosphate was highly effective in immobilizing Pb and that when the initial concentration of Pb²⁺ was 100 mg/L, the immobilization rate of Pb was enhanced. Further, the mechanisms underlying solubilization of PR and biomineralization of Pb ions in LA were evaluated by Fourier transform infrared spectroscopy and X-ray diffraction. The results showed that some functional groups on the PR surface and LA were altered, and LA could form hydroxyapatite and pyrophosphate with Pb ions.

Immobilization of mercury using high-phosphate culture-modified microalgae

This study developed a novel Hg(II) immobilization strategy by firstly incubating algal cells in high-phosphate cultures for surface modification, followed by obtaining the P-rich biomass as adsorbents for enhanced Hg(II) removal and then charring the Hg-loaded biomass to prevent leaching of phosphate and to immobilize Hg(II). For algal surface modification, Scenedesmus obtusus XJ-15 were cultivated under different P concentrations and obtained the highest sites concentration of surface phosphoryl functional groups in 80 mg L^-1 P cultures. For Hg(II) adsorption, biomass from 80 mg L^-1 P cultures (B-80) achieved the highest saturated sorption capacity of 95 mg g^-1 fitting to Langmuir isotherm model under the optimum pH of 5.0. For charring stabilization, the Hg-loaded B-80 was calcinated under different temperatures, and the product obtained from 300 °C charring showed the lowest Hg(II) leaching rate without P release. Moreover, FT-IR and XPS analysis indicate that the surge of surface phosphoryl functional groups dominated the enhancement of Hg(II) sorption and also Hg(II) charring immobilization. The above results suggested that the developed strategy is promising for both phosphate and mercury removal from water and for co-immobilization of P and Hg(II) to prevent leaching.

Removal of Pb(II) by Pellicle-Like Biofilm-Producing Methylobacterium hispanicum EM2 Strain from Aqueous Media

As concerns are increasing about drinking water contamination with heavy metals, we investigated the possible use of a pellicle (floating biofilm)-like biofilm-producing microorganism as a biosorbent for the treatment of Pb(II) in aqueous solutions. The bacterial pellicle-producing Methylobacterium hispanicum EM2 strain (EM2) was newly isolated from mine tailing soil, and we investigated its use as a biosorbent for treating a Pb(II)-contaminated aqueous solution. The EM2 strain was strongly resistant to Pb(II) up to a concentration of 800 mg/L, and achieved remarkable adsorption performance (adsorption rate and maximum adsorption capacity of 96% ± 3.2% and 79.84 mg/g, respectively) under optimal conditions (pH, biomass content, contact time, and initial Pb(II) concentration of 7.1 g/L, 60 min, and 10 mg/L, respectively). The adsorption of Pb(II) was characterized by scanning electron microscopy-energy dispersive x-ray spectroscopy and Fourier-transform infrared analysis. The equilibrium data matched the Freundlich isotherm model well, indicating the occurrence of multilayer adsorption of Pb(II) onto the heterogeneous surface of the EM2 strain, which was also consistent with the pseudo-second-order kinetic model (R2 = 0.98). The high Pb(II) removal efficiency was also confirmed by conducting an adsorption experiment using Pb(II)-contaminated industrial wastewater.

Active and passive biosorption of Pb(II)using live and dead biomass of marine bacterium Bacillus xiamenensis PbRPSD202: Kinetics and isotherm studies

A highly lead(II) resistant (up to 2200 mg/l) bacterium PbRPSD202 was selected among 210 lead resistant bacteria isolated from marine environment of Paradeep Port, Odisha for possible biosoption of toxic Pb (II) ions from metals polluted environments. The bacterium was identified as Bacillus xiamenensis following the phenotypic as well as 16S rRNA gene sequence analysis. In addition to Pb(II), it also showed resistance towards other heavy metals like Cd(II), Cr(VI), As(III), Cu(II), Ni(II) and Zn(II). Batch biosorption of Pb(II) using both live and dead biomass of this strain was investigated under different operational parametric conditions such as pH, temperature, NaCl concentration, shaking speed, treatment time, biomass concentration and initial Pb(II) concentration. The maximum Pb(II) uptake of 216.75 and 207.4 mg/g biomass was obtained with live and dead biomass, respectively, at the optimum condition (4% w/v NaCl, pH 6.0, 35 °C, 140 rpm and 1 g/l biosorbent dose). Both active as well as passive Pb(II) bio-sorption process showed best fit with the pseudo-second-order kinetic model. The sorption mechanism was favoured with Langmuir isotherm model indicating monolayer type adsorption. FTIR and FESEM-EDX analysis further ensured the possible interactions of Pb(II) with bacterial cell surface ligands like hydroxyl, carbonyl, carboxyl and amine groups during surface adsorption. TEM analysis revealed the intracellular accumulation of lead ions. This investigation highlights the potential application of this bacterium for bioremediation of lead(II) from the multiple metals contaminated saline environment through biosorption.

Removal of Pb (II), As (III), and Cr (VI) by nitrogen-starved Papiliotrema laurentii strain RY1

Heavy metals such as lead, chromium, and metalloid like arsenic dominate the pinnacle in posing a threat to life. Being environment-friendly, elucidating the mechanism by which microorganisms detoxify such elements has always been an active field of research hitherto. In the present study, we have investigated the capability of nitrogen-deprived Papiliotrema laurentii strain RY1 toward enhanced tolerance and neutralizing toxic elements. There were biosorption and bioprecipitation of lead and chromium at the cell surfaces. Bioprecipitation mechanisms included the formation of lead phosphates and pyromorphites from lead, grimaldite from chromium. Transcripts such as metallothionein, aquaporins, and arsenical pump-driving ATPase have been surmised to be involved in the detoxification of elements. Furthermore, activation of antioxidant defense mechanisms for the cells for each of the elements should contribute towards yeast's propagation. The efficiency of removal of elements for live cells and immobilized cells were high for lead and chromium. To the best of our knowledge, this is the first report of such high tolerance of lead, arsenic, and chromium for any yeast. The yeast showed such varied response under dual stress due to nitrogen starvation and in the presence of respective elements. The yeast possesses promising potentials in nitrogen deprived and enriched environments to aid in bioremediation sectors.

Effects of Pb(II) and Cr(VI) Stress on Phosphate-Solubilizing Bacteria (Bacillus sp. Strain MRP-3): Oxidative Stress and Bioaccumulation Potential

The aim of this work was to ascertain the effects of Pb(II) and Cr(VI) on bacterial growth, generation of reactive oxygen species (ROS), activities of superoxide dismutase (SOD), and catalase (CAT), as well as the localization of bioaccumulated heavy metals in a phosphate-solubilizing bacterium. The results showed that the ROS increased from 1.4-fold to 1.8-fold of control under Pb(II) stress and decreased from 1.6-fold to 1.1-fold of control under Cr(VI) stress corresponding to metal concentrations (0.5–5 mmol·L⁻¹). The SOD activities were ROS dependent; however, the CAT activities increased under both Pb(II) and Cr(VI) stress, from 11.4 to 21.8 U·mg⁻¹ and 11.4 to 32.9 U·mg⁻¹, respectively. Intra/extracellular accumulation were investigated by scanning transmission electron microscopy with energy dispersive X-ray spectroscopy (STEM-EDS) and it was calculated that extracellular accumulated Pb accounted for 61.7–95.9% of the total accumulation, while extracellular accumulated Cr only accounted for up to 3.6% of the total accumulation. Attenuated total reflection/Fourier-transform infrared spectroscopy (ATR-FTIR) analysis confirmed that the functional groups involved in those extracellular accumulation were not located in the loosely bound extracellular polysaccharides substances.

Characterization of phosphate solubilizing bacteria isolated from heavy metal contaminated soils and their potential for lead immobilization

Phosphate solubilizing bacteria (PSB) were isolated from heavy metal contaminated soils and their potentials for lead (Pb) immobilization in soil were studied in this paper. 53 PSB strains were isolated and their minimum inhibitory concentrations (MICs) for lead were determined. The results showed that strains B3, B4, B10, F2-1 and L1-5 had relatively high lead resistant capabilities with MICs ranged from 0.5 to 8 mM, and were identified as species of Leclercia adecarboxylata and Pseudomonas putida by 16S rRNA. The most efficient PSB strains could solubilize 200 mg L^-1 of P, and phosphate solubilizing capacity of those PSBs was related to the concentrations of organic acids, acid phosphatase activity and pH. Furthermore, the growth pattern of L1-5 strain with the presence of Pb(NO₃)₂ was observed and a mechanism of biomineralization of lead ions in bacteria biomass was determined by FT-IR and XRD analyses. Results showed that high concentration of lead can inhibit the growth of PSBs, and L1-5 isolate can transform lead ions into lead hydroxyapatite and pyromorphite. The PSBs, which possessing the properties of immobilizing lead through phosphate solubilization and biomineralization could be exploited for bioremediation of Pb polluted soils in future.

Advances in exopolysaccharides based bioremediation of heavy metals in soil and water: A critical review

Extracellular polysaccharides or Exopolysaccharides (EPS) are extensively studied bacterial byproducts with high molecular weight attributed to several applications. In spite of their application in the field of food, pharmaceutical, nutraceutical, herbicidal and cosmeceutical industries they were well known for their efficiency in the bioremediation of water and soil tainted with heavy metals. These heavy metals are comparatively high in density than water and are involved in several biological processes. But slight increase in levels can create toxicological bias. The techniques like electrodialysis, chemical precipitation, ion exchange and membrane separation have a lot of disadvantages akin to high energy consumption, high cost, partial exclusion, and creation of poisonous mire. In this context, EPS has a top role to play in the bioremediation of heavy metals. This review gives the critical assessment of the extensive work done to deal this issue by different groups in the last five years. It also explains how different natural circumstances have attributed to the advancement of EPS production, thereby increasing the capacity of bioremediation to deal the issue of heavy metal contamination in both soil and water. A detailed discussion of the EPS formation by bacteria and fungi with their applicability was reported.