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Zhang X, Wang Z, Lu Y, Wei J, Qi S, Wu B, Cheng S. Sustainable Remediation of Soil and Water Utilizing Arbuscular Mycorrhizal Fungi: A Review. Microorganisms 2024; 12:1255. [PMID: 39065027 PMCID: PMC11279267 DOI: 10.3390/microorganisms12071255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 06/18/2024] [Accepted: 06/19/2024] [Indexed: 07/28/2024] Open
Abstract
Phytoremediation is recognized as an environmentally friendly technique. However, the low biomass production, high time consumption, and exposure to combined toxic stress from contaminated media weaken the potential of phytoremediation. As a class of plant-beneficial microorganisms, arbuscular mycorrhizal fungi (AMF) can promote plant nutrient uptake, improve plant habitats, and regulate abiotic stresses, and the utilization of AMF to enhance phytoremediation is considered to be an effective way to enhance the remediation efficiency. In this paper, we searched 520 papers published during the period 2000-2023 on the topic of AMF-assisted phytoremediation from the Web of Science core collection database. We analyzed the author co-authorship, country, and keyword co-occurrence clustering by VOSviewer. We summarized the advances in research and proposed prospective studies on AMF-assisted phytoremediation. The bibliometric analyses showed that heavy metal, soil, stress tolerance, and growth promotion were the research hotspots. AMF-plant symbiosis has been used in water and soil in different scenarios for the remediation of heavy metal pollution and organic pollution, among others. The potential mechanisms of pollutant removal in which AMF are directly involved through hyphal exudate binding and stabilization, accumulation in their structures, and nutrient exchange with the host plant are highlighted. In addition, the tolerance strategies of AMF through influencing the subcellular distribution of contaminants as well as chemical form shifts, activation of plant defenses, and induction of differential gene expression in plants are presented. We proposed that future research should screen anaerobic-tolerant AMF strains, examine bacterial interactions with AMF, and utilize AMF for combined pollutant removal to accelerate practical applications.
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Affiliation(s)
- Xueqi Zhang
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China; (X.Z.); (Z.W.); (B.W.)
| | - Zongcheng Wang
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China; (X.Z.); (Z.W.); (B.W.)
| | - Yebin Lu
- Power China Huadong Engineering Corporation Limited, Hangzhou 311122, China; (Y.L.); (J.W.); (S.Q.)
| | - Jun Wei
- Power China Huadong Engineering Corporation Limited, Hangzhou 311122, China; (Y.L.); (J.W.); (S.Q.)
| | - Shiying Qi
- Power China Huadong Engineering Corporation Limited, Hangzhou 311122, China; (Y.L.); (J.W.); (S.Q.)
| | - Boran Wu
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China; (X.Z.); (Z.W.); (B.W.)
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Shuiping Cheng
- Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China; (X.Z.); (Z.W.); (B.W.)
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
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Gou X, Hu Y, Ni H, Wang X, Qiu L, Chang X, Shao M, Wei G, Wei X. Arbuscular mycorrhizal fungi alleviate erosional soil nitrogen loss by regulating nitrogen cycling genes and enzymes in experimental agro-ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167425. [PMID: 37774877 DOI: 10.1016/j.scitotenv.2023.167425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 09/17/2023] [Accepted: 09/26/2023] [Indexed: 10/01/2023]
Abstract
Nutrient losses from agricultural ecosystems are increasingly threatening global environmental and human health. Although arbuscular mycorrhizal (AM) fungi have the potential to regulate soil nitrogen (N) loss by enhancing plant uptake and soil particle immobilization, the microbial mechanism behind such mycorrhizal effect is unknown. Herein, by conducting a simulated erosion experiment, we compared the effects of exogenous AM fungal inoculation (Funneliformis mosseae) on the gene abundances and enzyme activities of N-cycling processes, and associated such effect to N uptake and loss. The experiment was composed of combinations of two AM fungal treatments (control vs. AM fungal inoculation), two crops (maize vs. soybean) and two slopes of the plots (6° vs. 20°). The experimental plots subjected to natural rainfalls to simulate the erosion events. We showed that the effects of AM fungi were greater in the maize soils than in the soybean soils. In the maize soils, AM fungi increased the abundances of N-fixing (+81.1 %) and nitrifying genes (+200.7 %) and N cycling enzyme activity (+22.3 %). In the soybean soils, AM fungi increased the N-fixing gene abundance (+36.9 %) but decreased the abundance of nitrifying genes (-18.9 %). The abundance of N-fixing gene was positively correlated with N uptake but negatively correlated with N loss. Additionally, AM fungi enhanced the effects of mycorrhizal colonization and moisture but decreased the effects of nutrients on soil microbial metrics related to N-cycling processes. Therefore, AM fungal inoculation enhanced N uptake and reduced N loss by increasing N-fixing gene abundance, and that AM fungi should be preferably used for the low N environments or for the ecosystems highly limited by or competing for N.
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Affiliation(s)
- Xiaomei Gou
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yaxian Hu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Huaqian Ni
- College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiang Wang
- College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China; College of Land Science and Technology, China Agricultural University, Beijing 100193, China
| | - Liping Qiu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, Shaanxi 712100, China; College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xingchen Chang
- College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Mingan Shao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Gehong Wei
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China.
| | - Xiaorong Wei
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, the Research Center of Soil and Water Conservation and Ecological Environment, Chinese Academy of Sciences and Ministry of Education, Yangling, Shaanxi 712100, China; College of Soil & Water Conservation Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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Wicaksono WA, Semler B, Pöltl M, Berg C, Berg G, Cernava T. The microbiome of Riccia liverworts is an important reservoir for microbial diversity in temporary agricultural crusts. ENVIRONMENTAL MICROBIOME 2023; 18:46. [PMID: 37264474 DOI: 10.1186/s40793-023-00501-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 05/10/2023] [Indexed: 06/03/2023]
Abstract
BACKGROUND The microbiota of liverworts provides an interesting model for plant symbioses; however, their microbiome assembly is not yet understood. Here, we assessed specific factors that shape microbial communities associated with Riccia temporary agricultural crusts in harvested fields by investigating bacterial, fungal and archaeal communities in thalli and adhering soil from different field sites in Styria and Burgenland, Austria combining qPCR analyses, amplicon sequencing and advanced microscopy. RESULTS Riccia spec. div. was colonized by a very high abundance of bacteria (1010 16S rRNA gene copies per g of thallus) as well as archaea and fungi (108 ITS copies per g of thallus). Each Riccia thallus contain approx. 1000 prokaryotic and fungal ASVs. The field type was the main driver for the enrichment of fungal taxa, likely due to an imprint on soil microbiomes by the cultivated crop plants. This was shown by a higher fungal richness and different fungal community compositions comparing liverwort samples collected from pumpkin fields, with those from corn fields. In contrast, bacterial communities linked to liverworts are highly specialized and the soil attached to them is not a significant source of these bacteria. Specifically, enriched Cyanobacteria, Bacteroidetes and Methylobacteria suggest a symbiotic interaction. Intriguingly, compared to the surrounding soil, the thallus samples were shown to enrich several well-known bacterial and fungal phytopathogens indicating an undescribed role of liverworts as potential reservoirs of crop pathogens. CONCLUSIONS Our results provide evidence that a stable bacterial community but varying fungal communities are colonizing liverwort thalli. Post-harvest, temporary agricultural biocrusts are important reservoirs for microbial biodiversity but they have to be considered as potential reservoirs for pathogens as well.
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Affiliation(s)
- Wisnu Adi Wicaksono
- Institute of Environmental Biotechnology, Graz University of Technology, Graz, 8010, Austria
| | - Bettina Semler
- Institute of Environmental Biotechnology, Graz University of Technology, Graz, 8010, Austria
| | - Martina Pöltl
- Institute of Biology, University of Graz, Graz, 8010, Austria
| | - Christian Berg
- Institute of Biology, University of Graz, Graz, 8010, Austria
| | - Gabriele Berg
- Institute of Environmental Biotechnology, Graz University of Technology, Graz, 8010, Austria
- Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB), Potsdam, Germany
- Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Tomislav Cernava
- Institute of Environmental Biotechnology, Graz University of Technology, Graz, 8010, Austria.
- Graz University of Technology, Graz, Austria.
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Mapelli F, Vergani L, Terzaghi E, Zecchin S, Raspa G, Marasco R, Rolli E, Zanardini E, Morosini C, Anelli S, Nastasio P, Sale VM, Armiraglio S, Di Guardo A, Borin S. Pollution and edaphic factors shape bacterial community structure and functionality in historically contaminated soils. Microbiol Res 2022; 263:127144. [PMID: 35908425 DOI: 10.1016/j.micres.2022.127144] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Revised: 03/15/2022] [Accepted: 07/22/2022] [Indexed: 11/16/2022]
Abstract
Studies about biodegradation potential in soils often refer to artificially contaminated and simplified systems, overlooking the complexity associated with contaminated sites in a real context. This work aims to provide a holistic view on microbiome assembly and functional diversity in the model site SIN Brescia-Caffaro (Italy), characterized by historical and uneven contamination by organic and inorganic compounds. Here, physical and chemical analyses and microbiota characterization were applied on one-hundred-twenty-seven soil samples to unravel the environmental factors driving bacterial community assembly and biodegradation potential in three former agricultural fields. Chemical analyses showed a patchy distribution of metals, metalloids and polychlorinated biphenyls (PCB) and allowed soil categorization according to depth and area of collections. Likewise, the bacterial community structure, described by molecular fingerprinting and 16S rRNA gene analyses, was significantly different according to collection site and depth. Pollutant concentrations (i.e., hexachloro-biphenyls, arsenic and mercury), nitrogen content and parameters related to soil texture were identified as main drivers of microbiota assembly, being significantly correlated to bacterial community composition. Moreover, bacteria putatively involved in the aerobic degradation of PCBs were enriched over the total bacterial community in topsoils, where the highest activity was recorded using fluorescein hydrolysis as proxy. Metataxonomic analyses revealed the presence of bacteria having metabolic pathways related to PCB degradation and tolerance to heavy metals and metalloids in the topsoil samples collected in all areas. Overall, the provided dissection of soil microbiota structure and its degradation potential in the SIN Brescia-Caffaro can contribute to target specific areas for rhizoremediation implementation. Metagenomics studies could be implemented in the future to understand if specific degradative pathways are present in historically polluted sites characterized by the co-occurrence of multiple classes of contaminants.
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Affiliation(s)
- Francesca Mapelli
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, Italy
| | - Lorenzo Vergani
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, Italy
| | - Elisa Terzaghi
- Department of Science and High Technology, University of Insubria, Via Valleggio 11, Como, Italy
| | - Sarah Zecchin
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, Italy
| | - Giuseppe Raspa
- Department of Chemical Engineering Materials and Environment, Sapienza University of Rome, Via Eudossiana 18, Rome, Italy
| | - Ramona Marasco
- Biological and Environmental Sciences and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Eleonora Rolli
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, Italy
| | - Elisabetta Zanardini
- Department of Science and High Technology, University of Insubria, Via Valleggio 11, Como, Italy
| | - Cristiana Morosini
- Department of Science and High Technology, University of Insubria, Via Valleggio 11, Como, Italy
| | - Simone Anelli
- Ente Regionale per i Servizi all'Agricoltura e alle Foreste, Via Pola 12, Milan, Italy
| | - Paolo Nastasio
- Ente Regionale per i Servizi all'Agricoltura e alle Foreste, Via Pola 12, Milan, Italy
| | - Vanna Maria Sale
- Ente Regionale per i Servizi all'Agricoltura e alle Foreste, Via Pola 12, Milan, Italy
| | - Stefano Armiraglio
- Municipality of Brescia - Museum of Natural Sciences, Via Ozanam 4, Brescia, Italy
| | - Antonio Di Guardo
- Department of Science and High Technology, University of Insubria, Via Valleggio 11, Como, Italy
| | - Sara Borin
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, Italy.
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Qian Y, Zhao G, Zhou J, Zhao H, Mutter TY, Huang X. Combined Bioremediation of Bensulfuron-Methyl Contaminated Soils With Arbuscular Mycorrhizal Fungus and Hansschlegelia zhihuaiae S113. Front Microbiol 2022; 13:843525. [PMID: 35295293 PMCID: PMC8918986 DOI: 10.3389/fmicb.2022.843525] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Accepted: 01/25/2022] [Indexed: 11/29/2022] Open
Abstract
Over the past decades, because of large-scale bensulfuron-methyl (BSM) application, environmental residues of BSM have massively increased, causing severe toxicity in rotation-sensitive crops. The removal of BSM from the environment has become essential. In this study, the combined bioremediation of the arbuscular mycorrhizal fungi (AMF) Rhizophagus intraradices and BSM-degrading strain Hansschlegelia zhihuaiae S113 of BSM-polluted soil was investigated. BSM degradation by S113 in the maize rhizosphere could better promote AMF infection in the roots of maize, achieving an infection rate of 86.70% on the 36th day in the AMF + S113 + BSM group. Similarly, AMF enhanced the colonization and survival of S113 in maize rhizosphere, contributing 4.65 × 105 cells/g soil on the 15th day and 3.78 × 104 cells/g soil on the 20th day to a population of colonized-S113 (based possibly on the strong root system established by promoting plant-growth AMF). Both S113 and AMF coexisted in rhizosphere soil. The BSM-degrading strain S113 could completely remove BSM at 3 mg/kg from the maize rhizosphere soil within 12 days. AMF also promoted the growth of maize seedlings. When planted in BSM-contaminated soil, maize roots had a fresh weight of 2.59 ± 0.26 g in group S113 + AMF, 2.54 ± 0.20 g in group S113 + AMF + BSM, 2.02 ± 0.16 g in group S113 + BSM, and 2.61 ± 0.25 g in the AMF group, all of which exceeded weights of the control group on the 36th day except for the S113 + BSM group. Additionally, high-throughput sequencing results indicated that simultaneous inoculation with AMF and strain S113 of BSM-polluted maize root-soil almost left the indigenous bacterial community diversity and richness in maize rhizosphere soil unaltered. This represents a major advantage of bioremediation approaches resulting from the existing vital interactions among local microorganisms and plants in the soil. These findings may provide theoretical guidance for utilizing novel joint-bioremediation technologies, and constitute an important contribution to environmental pollution bioremediation while simultaneously ensuring crop safety and yield.
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Affiliation(s)
- Yingying Qian
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Guoqiang Zhao
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Jing Zhou
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Huazhu Zhao
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
| | - Thamer Y. Mutter
- Department of Biology, College of Science, University of Anbar, Ramadi, Iraq
| | - Xing Huang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, China
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Mierzejewska E, Urbaniak M, Zagibajło K, Vangronsveld J, Thijs S. The Effect of Syringic Acid and Phenoxy Herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) on Soil, Rhizosphere, and Plant Endosphere Microbiome. FRONTIERS IN PLANT SCIENCE 2022; 13:882228. [PMID: 35712561 PMCID: PMC9195007 DOI: 10.3389/fpls.2022.882228] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 05/02/2022] [Indexed: 05/07/2023]
Abstract
The integration of phytoremediation and biostimulation can improve pollutant removal from the environment. Plant secondary metabolites (PSMs), which are structurally related to xenobiotics, can stimulate the presence of microbial community members, exhibiting specialized functions toward detoxifying, and thus mitigating soil toxicity. In this study, we evaluated the effects of enrichment of 4-chloro-2-methylphenoxyacetic acid (MCPA) contaminated soil (unplanted and zucchini-planted) with syringic acid (SA) on the bacterial community structure in soil, the rhizosphere, and zucchini endosphere. Additionally, we measured the concentration of MCPA in soil and fresh biomass of zucchini. The diversity of bacterial communities differed significantly between the studied compartments (i.e., unplanted soil, rhizospheric soil, and plant endosphere: roots or leaves) and between used treatments (MCPA or/and SA application). The highest diversity indices were observed for unplanted soil and rhizosphere. Although the lowest diversity was observed among leaf endophytes, this community was significantly affected by MCPA or SA: the compounds applied separately favored the growth of Actinobacteria (especially Pseudarthrobacter), while their simultaneous addition promoted the growth of Firmicutes (especially Psychrobacillus). The application of MCPA + SA together lead also to enhanced growth of Pseudomonas, Burkholderia, Sphingomonas, and Pandoraea in the rhizosphere, while SA increased the occurrence of Pseudomonas in leaves. In addition, SA appeared to have a positive influence on the degradative potential of the bacterial communities against MCPA: its addition, followed by zucchini planting, significantly increased the removal of the herbicide (50%) from the soil without affecting, neither positively nor negatively, the plant growth.
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Affiliation(s)
- Elżbieta Mierzejewska
- UNESCO Chair on Ecohydrology and Applied Ecology, Faculty of Biology and Environmental Protection, University of Łódź, Łódź, Poland
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
- *Correspondence: Elżbieta Mierzejewska,
| | - Magdalena Urbaniak
- UNESCO Chair on Ecohydrology and Applied Ecology, Faculty of Biology and Environmental Protection, University of Łódź, Łódź, Poland
| | - Katarzyna Zagibajło
- Food Safety Laboratory, Research Institute of Horticulture, Skierniewice, Poland
| | - Jaco Vangronsveld
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
- Department of Plant Physiology and Biophysics, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Skłodowska University, Lublin, Poland
| | - Sofie Thijs
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
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Valizadeh S, Lee SS, Baek K, Choi YJ, Jeon BH, Rhee GH, Andrew Lin KY, Park YK. Bioremediation strategies with biochar for polychlorinated biphenyls (PCBs)-contaminated soils: A review. ENVIRONMENTAL RESEARCH 2021; 200:111757. [PMID: 34303678 DOI: 10.1016/j.envres.2021.111757] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 07/05/2021] [Accepted: 07/17/2021] [Indexed: 06/13/2023]
Abstract
Polychlorinated biphenyls (PCBs) are hazardous organic contaminants threatening human health and environmental safety due to their toxicity and carcinogenicity. Biochar (BC) is an eco-friendly carbonaceous material that can extensively be utilized for the remediation of PCBs-contaminated soils. In the last decade, many studies reported that BC is beneficial for soil quality enhancement and agricultural productivity based on its physicochemical characteristics. In this review, the potential of BC application in PCBs-contaminated soils is elaborated as biological strategies (e.g., bioremediation and phytoremediation) and specific mechanisms are also comprehensively demonstrated. Further, the synergy effects of BC application on PCBs-contaminated soils are discussed, in view of eco-friendly, beneficial, and productive aspects.
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Affiliation(s)
- Soheil Valizadeh
- School of Environmental Engineering, University of Seoul, Seoul, 02504, Republic of Korea
| | - Sang Soo Lee
- Department of Environmental & Energy Engineering, Yonsei University, Wonju, 26493, Republic of Korea
| | - Kitae Baek
- Department of Environment & Energy (BK21 FOUR) and Soil Environment Research Center, Jeonbuk National University, Jeonju, Jeollabukdo 54896, Republic of Korea
| | - Yong Jun Choi
- School of Environmental Engineering, University of Seoul, Seoul, 02504, Republic of Korea
| | - Byong-Hun Jeon
- Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul, 04763, Republic of Korea
| | - Gwang Hoon Rhee
- Department of Mechanical and Information Engineering, University of Seoul, Seoul, 02504, Republic of Korea
| | - Kun-Yi Andrew Lin
- Department of Environmental Engineering, National Chung Hsing University, 250 Kuo-Kuang Road, Taichung, Taiwan
| | - Young-Kwon Park
- School of Environmental Engineering, University of Seoul, Seoul, 02504, Republic of Korea.
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8
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Sharma S, Compant S, Franken P, Ruppel S, Ballhausen MB. It Takes Two to Tango: A Bacterial Biofilm Provides Protection against a Fungus-Feeding Bacterial Predator. Microorganisms 2021; 9:microorganisms9081566. [PMID: 34442645 PMCID: PMC8398733 DOI: 10.3390/microorganisms9081566] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 07/15/2021] [Accepted: 07/17/2021] [Indexed: 11/23/2022] Open
Abstract
Fungus-bacterium interactions are widespread, encompass multiple interaction types from mutualism to parasitism, and have been frequent targets for microbial inoculant development. In this study, using in vitro systems combined with confocal laser scanning microscopy and real-time quantitative PCR, we test whether the nitrogen-fixing bacterium Kosakonia radicincitans can provide protection to the plant-beneficial fungus Serendipita indica, which inhabits the rhizosphere and colonizes plants as an endophyte, from the fungus-feeding bacterium Collimonas fungivorans. We show that K. radicincitans can protect fungal hyphae from bacterial feeding on solid agar medium, with probable mechanisms being quick hyphal colonization and biofilm formation. We furthermore find evidence for different feeding modes of K. radicincitans and C. fungivorans, namely “metabolite” and “hyphal feeding”, respectively. Overall, we demonstrate, to our knowledge, the first evidence for a bacterial, biofilm-based protection of fungal hyphae against attack by a fungus-feeding, bacterial predator on solid agar medium. Besides highlighting the importance of tripartite microbial interactions, we discuss implications of our results for the development and application of microbial consortium-based bioprotectants and biostimulants.
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Affiliation(s)
- Shubhangi Sharma
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979 Großbeeren, Germany; (S.S.); (P.F.); (S.R.)
| | - Stéphane Compant
- AIT Austrian Institute of Technology, Center for Health and Bioresources, Konrad Lorenz Strasse 24, 3430 Tulln, Austria;
| | - Philipp Franken
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979 Großbeeren, Germany; (S.S.); (P.F.); (S.R.)
- Institute of Microbiology, Friedrich Schiller University Jena, Neugasse 24, 07743 Jena, Germany
| | - Silke Ruppel
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979 Großbeeren, Germany; (S.S.); (P.F.); (S.R.)
| | - Max-Bernhard Ballhausen
- Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979 Großbeeren, Germany; (S.S.); (P.F.); (S.R.)
- Correspondence:
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9
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Sun D, Hu J, Bai J, Qin H, Wang J, Wang J, Lin X. Arbuscular mycorrhizal fungus facilitates ryegrass (Lolium perenne L.) growth and polychlorinated biphenyls degradation in a soil applied with nanoscale zero-valent iron. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 215:112170. [PMID: 33773154 DOI: 10.1016/j.ecoenv.2021.112170] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Revised: 03/07/2021] [Accepted: 03/17/2021] [Indexed: 06/12/2023]
Abstract
Nanoscale zero-valent iron (nZVI) shows an excellent degradation effect on chlorinated contaminants in soil, but poses a threat to plants in combination with phytoremediation. Arbuscular mycorrhizal (AM) fungus can reduce the phyototoxicity of nZVI, but their combined impacts on polychlorinated biphenyls (PCBs) degradation and plant growth remain unclear. Here, a greenhouse pot experiment was conducted to investigate the influences of nZVI and/or Funneliformis caledonium on soil PCB degradation and ryegrass (Lolium perenne L.) antioxidative responses. The amendment of nZVI significantly reduced not only the total and homolog concentrations of PCBs in the soil, but also the ryegrass biomass as well as soil available P and root P concentrations. Moreover, nZVI significantly decreased leaf superoxide disutase (SOD) activity, while tended to decrease the protein content. In contrast, the additional inoculation of F. caledonium significantly increased leaf SOD activity and protein content, while tended to increase the catalase activity and tended to decrease the malondialdehyde content. The additional inoculation of F. caledonium also significantly increased soil alkaline phosphatase activity, and tended to increase root P concentration, but had no significantly effects on soil available P concentration, the biomass and P acquisition of ryegrass, which could be attributed to the fixation of soil available nutrients by nZVI. Additionally, F. caledonium facilitated PCB degradation in the nZVI-applied soil. Thus, AM fungus can alleviate the nZVI-induced phytotoxicity, showing great application potentials in accompany with nZVI for soil remediation.
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Affiliation(s)
- Dongnian Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; Shanghai Collaborative Innovation Centre for WEEE Recycling, WEEE Research Centre of Shanghai Polytechnic University, Shanghai 201209, China
| | - Junli Hu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Jianfeng Bai
- Shanghai Collaborative Innovation Centre for WEEE Recycling, WEEE Research Centre of Shanghai Polytechnic University, Shanghai 201209, China.
| | - Hua Qin
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, School of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou 311300, China
| | - Junhua Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jingwei Wang
- Shanghai Collaborative Innovation Centre for WEEE Recycling, WEEE Research Centre of Shanghai Polytechnic University, Shanghai 201209, China
| | - Xiangui Lin
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
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11
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Ray P, Lakshmanan V, Labbé JL, Craven KD. Microbe to Microbiome: A Paradigm Shift in the Application of Microorganisms for Sustainable Agriculture. Front Microbiol 2020; 11:622926. [PMID: 33408712 PMCID: PMC7779556 DOI: 10.3389/fmicb.2020.622926] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 12/02/2020] [Indexed: 12/14/2022] Open
Abstract
Light, water and healthy soil are three essential natural resources required for agricultural productivity. Industrialization of agriculture has resulted in intensification of cropping practices using enormous amounts of chemical pesticides and fertilizers that damage these natural resources. Therefore, there is a need to embrace agriculture practices that do not depend on greater use of fertilizers and water to meet the growing demand of global food requirements. Plants and soil harbor millions of microorganisms, which collectively form a microbial community known as the microbiome. An effective microbiome can offer benefits to its host, including plant growth promotion, nutrient use efficiency, and control of pests and phytopathogens. Therefore, there is an immediate need to bring functional potential of plant-associated microbiome and its innovation into crop production. In addition to that, new scientific methodologies that can track the nutrient flux through the plant, its resident microbiome and surrounding soil, will offer new opportunities for the design of more efficient microbial consortia design. It is now increasingly acknowledged that the diversity of a microbial inoculum is as important as its plant growth promoting ability. Not surprisingly, outcomes from such plant and soil microbiome studies have resulted in a paradigm shift away from single, specific soil microbes to a more holistic microbiome approach for enhancing crop productivity and the restoration of soil health. Herein, we have reviewed this paradigm shift and discussed various aspects of benign microbiome-based approaches for sustainable agriculture.
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Affiliation(s)
- Prasun Ray
- Noble Research Institute, LLC, Ardmore, OK, United States
| | | | - Jessy L. Labbé
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
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12
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Meglouli H, Fontaine J, Lounès-Hadj Sahraoui A. Dioxins/furans disturb the life cycle of the arbuscular mycorrhizal fungus, Rhizophagus irregularis and chicory root elongation grown under axenic conditions. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1497-1504. [PMID: 32634318 DOI: 10.1080/15226514.2020.1784089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF)-assisted phytoremediation is a promising technology for sustainable removal of hazardous pollutants like dioxins/furans (PCDD/F) from the soil. However, little is known on AMF development in the presence of the persistent organic pollutants, PCDD/F. Thus, the present work aims at investigating the impact of increasing PCDD/F concentrations on the development of both partners of the symbiosis: the AMF, Rhizophagus irregularis and the chicory roots, Cichorium intybus L. grown under axenic conditions. Our results show that even R. irregularis spore germination is not affected by PCDD/F, it occurred mainly in linear way. However, root colonization, extra-radical hyphal elongation and sporulation are reduced by 40, 30, and 75%, respectively, at the highest PCDD/F concentration. In addition, while non-mycorrhizal root growth (length and dry weight) decreased at the highest PCDD/F concentration, no negative effect was observed on the dry weight of mycorrhizal roots. In conclusion, our findings show that although high PCDD/F concentrations disturb the main stages of R. irregularis development, the AMF remains able to fulfill its life cycle in the presence of PCDD/F. Moreover, the mycorrhizal inoculation protects the host plant against PCDD/F phytotoxicity. AMF could thus represent an interesting amendment option to assist phytoremediation of PCDD/F contaminated soils.
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Affiliation(s)
- Hacene Meglouli
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), SFR Condorcet FR CNRS 3417, U Calais Cedex, France
| | - Joel Fontaine
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), SFR Condorcet FR CNRS 3417, U Calais Cedex, France
| | - Anissa Lounès-Hadj Sahraoui
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), SFR Condorcet FR CNRS 3417, U Calais Cedex, France
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Huang S, Shan M, Chen J, Penttinen P, Qin H. Contrasting dynamics of polychlorinated biphenyl dissipation and fungal community composition in low and high organic carbon soils with biochar amendment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:33432-33442. [PMID: 30264347 DOI: 10.1007/s11356-018-3271-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2018] [Accepted: 09/17/2018] [Indexed: 06/08/2023]
Abstract
Biochar amendment has been advocated as an effective method to remediate organic pollutant-contaminated soils through adsorption and stimulating microbial degradation. However, such effects can vary depending on soil properties and biochar physiochemical characteristics. The objective of this study was to compare the dynamic variations of polychlorinated biphenyls (PCBs) in low and high soil organic carbon (SOC) soils both amended with biochar and to investigate its linkage with fungal community composition. Two soils having the same texture and soil type but varying in SOC contents were contaminated with PCBs to a final concentration of 60 mg kg-1 and amended with 2% bamboo biochar. Temporal changes of PCB remaining in soils and adsorbed on biochar particles were determined during a 2-month incubation. Diversity and composition of fungal communities in both low and high SOC soils were investigated with Illumina MiSeq sequencing. The results showed that the PCB concentrations in low SOC soil were significantly lower than those in high SOC soil during the incubation. In the low SOC soil, the biochar particle adsorbed higher amounts of PCB, tetra-, and penta-chlorobiphenyls (CBs) than those in high SOC soil, and stimulated the dissipation of di- and tri-CBs. The nonmetric multidimensional scaling profile showed significant (p < 0.05) differences in the fungal community composition between the low and high SOC soils. The relative abundances of Eurotiomycetes were gradually increased, whereas those of Sordariomycetes and Dothideomycetes were decreased with increasing incubation time in the low SOC soils. In contrast, the fungal communities in high SOC soils were relatively stable. The relative abundances of Eurotiomycetes and Sordariomycetes were positively correlated with PCB dissipation in low and high SOC content soils, respectively. Our results suggest that SOC content affects PCB dissipation and fungal community composition in biochar-amended soils, and biochars have a high remediation potential of PCB in soils with low SOC contents.
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Affiliation(s)
- Shengyan Huang
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A & F University, Hangzhou, 311300, China
- Zhejiang Provincial Collaborative Innovation Center for Bamboo Resources and High-efficiency Utilization, Hangzhou, 311300, China
- College of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou, 311300, China
| | - Mingjuan Shan
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A & F University, Hangzhou, 311300, China
- Zhejiang Provincial Collaborative Innovation Center for Bamboo Resources and High-efficiency Utilization, Hangzhou, 311300, China
- College of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou, 311300, China
| | - Junhui Chen
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A & F University, Hangzhou, 311300, China.
- Zhejiang Provincial Collaborative Innovation Center for Bamboo Resources and High-efficiency Utilization, Hangzhou, 311300, China.
- College of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou, 311300, China.
| | - Petri Penttinen
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A & F University, Hangzhou, 311300, China
- College of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou, 311300, China
| | - Hua Qin
- Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A & F University, Hangzhou, 311300, China.
- Zhejiang Provincial Collaborative Innovation Center for Bamboo Resources and High-efficiency Utilization, Hangzhou, 311300, China.
- College of Environmental and Resource Sciences, Zhejiang A & F University, Hangzhou, 311300, China.
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14
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Hussain I, Aleti G, Naidu R, Puschenreiter M, Mahmood Q, Rahman MM, Wang F, Shaheen S, Syed JH, Reichenauer TG. Microbe and plant assisted-remediation of organic xenobiotics and its enhancement by genetically modified organisms and recombinant technology: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 628-629:1582-1599. [PMID: 30045575 DOI: 10.1016/j.scitotenv.2018.02.037] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 01/31/2018] [Accepted: 02/03/2018] [Indexed: 05/18/2023]
Abstract
Environmental problems such as the deterioration of groundwater quality, soil degradation and various threats to human, animal and ecosystem health are closely related to the presence of high concentrations of organic xenobiotics in the environment. Employing appropriate technologies to remediate contaminated soils is crucial due to the site-specificity of most remediation methods. The limitations of conventional remediation technologies include poor environmental compatibility, high cost of implementation and poor public acceptability. This raises the call to employ biological methods for remediation. Bioremediation and microbe-assisted bioremediation (phytoremediation) offer many ecological and cost-associated benefits. The overall efficiency and performance of bio- and phytoremediation approaches can be enhanced by genetically modified microbes and plants. Moreover, phytoremediation can also be stimulated by suitable plant-microbe partnerships, i.e. plant-endophytic or plant-rhizospheric associations. Synergistic interactions between recombinant bacteria and genetically modified plants can further enhance the restoration of environments impacted by organic pollutants. Nevertheless, releasing genetically modified microbes and plants into the environment does pose potential risks. These can be minimized by adopting environmental biotechnological techniques and guidelines provided by environmental protection agencies and other regulatory frameworks. The current contribution provides a comprehensive overview on enhanced bioremediation and phytoremediation approaches using transgenic plants and microbes. It also sheds light on the mitigation of associated environmental risks.
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Affiliation(s)
- Imran Hussain
- AIT Austrian Institute of Technology, Centre for Energy, Environmental Resources and Technologies, Tulln, Austria; Department of Molecular Systems Biology, Faculty of Life Sciences, University of Vienna, Austria
| | - Gajender Aleti
- AIT Austrian Institute of Technology, Centre for Energy, Environmental Resources and Technologies, Tulln, Austria
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, Callaghan, New South Wales, Australia
| | - Markus Puschenreiter
- Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Qaisar Mahmood
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad, Pakistan
| | - Mohammad Mahmudur Rahman
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, Callaghan, New South Wales, Australia
| | - Fang Wang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Shahida Shaheen
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad, Pakistan
| | - Jabir Hussain Syed
- Department of Meteorology, COMSATS Institute of Information Technology, Park Road Tarlai Kalan 45550, Islamabad, Pakistan; Department of Civil and Environmental Engineering, Hong Kong Polytechnic University, Hong Kong.
| | - Thomas G Reichenauer
- AIT Austrian Institute of Technology, Centre for Energy, Environmental Resources and Technologies, Tulln, Austria.
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Gui H, Purahong W, Hyde KD, Xu J, Mortimer PE. The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition. Front Microbiol 2017; 8:1120. [PMID: 28676797 PMCID: PMC5476864 DOI: 10.3389/fmicb.2017.01120] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 06/01/2017] [Indexed: 12/25/2022] Open
Abstract
Bacterial communities and arbuscular mycorrhizal fungi (AMF) co-occur in the soil, however, the interaction between these two groups during litter decomposition remains largely unexplored. In order to investigate the effect of AMF on soil bacterial communities, we designed dual compartment microcosms, where AMF (Funneliformis mosseae) was allowed access (AM) to, or excluded (NM) from, a compartment containing forest soil and litterbags. Soil samples from this compartment were analyzed at 0, 90, 120, 150, and 180 days. For each sample, Illumina sequencing was used to assess any changes in the soil bacterial communities. We found that most of the obtained operational taxonomic units (OTUs) from both treatments belonged to the phylum of Proteobacteria, Acidobacteria, and Actinobacteria. The community composition of bacteria at phylum and class levels was slightly influenced by both time and AMF. In addition, time and AMF significantly affected bacterial genera (e.g., Candidatus Solibacter, Dyella, Phenylobacterium) involved in litter decomposition. Opposite to the bacterial community composition, we found that overall soil bacterial OTU richness and diversity are relatively stable and were not significantly influenced by either time or AMF inoculation. OTU richness at phylum and class levels also showed consistent results with overall bacterial OTU richness. Our study provides new insight into the influence of AMF on soil bacterial communities at the genus level.
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Affiliation(s)
- Heng Gui
- Key laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of SciencesKunming, China
- World Agroforestry Centre, East and Central AsiaKunming, China
- Centre of Excellence in Fungal Research, Mae Fah Luang UniversityChiang Rai, Thailand
- School of Science, Mae Fah Luang UniversityChiang Rai, Thailand
| | - Witoon Purahong
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental ResearchHalle, Germany
| | - Kevin D. Hyde
- Centre of Excellence in Fungal Research, Mae Fah Luang UniversityChiang Rai, Thailand
- School of Science, Mae Fah Luang UniversityChiang Rai, Thailand
| | - Jianchu Xu
- Key laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of SciencesKunming, China
- World Agroforestry Centre, East and Central AsiaKunming, China
| | - Peter E. Mortimer
- Key laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of SciencesKunming, China
- World Agroforestry Centre, East and Central AsiaKunming, China
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Thijs S, Sillen W, Weyens N, Vangronsveld J. Phytoremediation: State-of-the-art and a key role for the plant microbiome in future trends and research prospects. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:23-38. [PMID: 27484694 DOI: 10.1080/15226514.2016.1216076] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Phytoremediation is increasingly adopted as a more sustainable approach for soil remediation. However, significant advances in efficiency are still necessary to attain higher levels of environmental and economic sustainability. Current interventions do not always give the expected outcomes in field settings due to an incomplete understanding of the multicomponent biological interactions. New advances in -omics are gradually implemented for studying microbial communities of polluted land in situ. This opens new perspectives for the discovery of biodegradative strains and provides us new ways of interfering with microbial communities to enhance bioremediation rates. This review presents retrospectives and future perspectives for plant microbiome studies relevant to phytoremediation, as well as some knowledge gaps in this promising research field. The implementation of phytoremediation in soil clean-up management systems is discussed, and an overview of the promoting factors that determine the growth of the phytoremediation market is given. Continuous growth is expected since elimination of contaminants from the environment is demanded. The evolution of scientific thought from a reductionist view to a more holistic approach will boost phytoremediation as an efficient and reliable phytotechnology. It is anticipated that phytoremediation will prove the most promising for organic contaminant degradation and bioenergy crop production on marginal land.
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Affiliation(s)
- Sofie Thijs
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Wouter Sillen
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Nele Weyens
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Jaco Vangronsveld
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
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17
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Vergani L, Mapelli F, Zanardini E, Terzaghi E, Di Guardo A, Morosini C, Raspa G, Borin S. Phyto-rhizoremediation of polychlorinated biphenyl contaminated soils: An outlook on plant-microbe beneficial interactions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 575:1395-1406. [PMID: 27717569 DOI: 10.1016/j.scitotenv.2016.09.218] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Revised: 09/28/2016] [Accepted: 09/28/2016] [Indexed: 05/18/2023]
Abstract
Polychlorinated biphenyls (PCBs) are toxic chemicals, recalcitrant to degradation, bioaccumulative and persistent in the environment, causing adverse effects on ecosystems and human health. For this reason, the remediation of PCB-contaminated soils is a primary issue to be addressed. Phytoremediation represents a promising tool for in situ soil remediation, since the available physico-chemical technologies have strong environmental and economic impacts. Plants can extract and metabolize several xenobiotics present in the soil, but their ability to uptake and mineralize PCBs is limited due to the recalcitrance and low bioavailability of these molecules that in turn impedes an efficient remediation of PCB-contaminated soils. Besides plant degradation ability, rhizoremediation takes into account the capability of soil microbes to uptake, attack and degrade pollutants, so it can be seen as the most suitable strategy to clean-up PCB-contaminated soils. Microbes are in fact the key players of PCB degradation, performed under both aerobic and anaerobic conditions. In the rhizosphere, microbes and plants positively interact. Microorganisms can promote plant growth under stressed conditions typical of polluted soils. Moreover, in this specific niche, root exudates play a pivotal role by promoting the biphenyl catabolic pathway, responsible for microbial oxidative PCB metabolism, and by improving the overall PCB degradation performance. Besides rhizospheric microbial community, also the endophytic bacteria are involved in pollutant degradation and represent a reservoir of microbial resources to be exploited for bioremediation purposes. Here, focusing on plant-microbe beneficial interactions, we propose a review of the available results on PCB removal from soil obtained combining different plant and microbial species, mainly under simplified conditions like greenhouse experiments. Furthermore, we discuss the potentiality of "omics" approaches to identify PCB-degrading microbes, an aspect of paramount importance to design rhizoremediation strategies working efficiently under different environmental conditions, pointing out the urgency to expand research investigations to field scale.
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Affiliation(s)
- Lorenzo Vergani
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, 20133 Milan, Italy
| | - Francesca Mapelli
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, 20133 Milan, Italy
| | - Elisabetta Zanardini
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 9, Como, Italy
| | - Elisa Terzaghi
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 9, Como, Italy
| | - Antonio Di Guardo
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 9, Como, Italy
| | - Cristiana Morosini
- Department of Science and High Technology (DiSAT), University of Insubria, Via G.B. Vico 46, Varese, Italy
| | - Giuseppe Raspa
- Department of Chemical Engineering Materials Environment (DICMA), Rome "La Sapienza" University, Via Eudossiana 18, Rome, Italy
| | - Sara Borin
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, 20133 Milan, Italy.
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Qin H, Brookes PC, Xu J. Arbuscular Mycorrhizal Fungal Hyphae Alter Soil Bacterial Community and Enhance Polychlorinated Biphenyls Dissipation. Front Microbiol 2016; 7:939. [PMID: 27379068 PMCID: PMC4908113 DOI: 10.3389/fmicb.2016.00939] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Accepted: 06/01/2016] [Indexed: 11/26/2022] Open
Abstract
We investigated the role of arbuscular mycorrhizal fungal (AMF) hyphae in alternation of soil microbial community and Aroclor 1242 dissipation. A two-compartment rhizobox system with double nylon meshes in the central was employed to exclude the influence of Cucurbita pepo L. root exudates on hyphal compartment soil. To assess the quantitative effect of AMF hyphae on soil microbial community, we separated the hyphal compartment soil into four horizontal layers from the central mesh to outer wall (e.g., L1–L4). Soil total PCBs dissipation rates ranged from 35.67% of L4 layer to 57.39% of L1 layer in AMF inoculated treatment, which were significant higher than the 17.31% of the control (P < 0.05). The dissipation rates of tri-, tetrachlorinated biphenyls as well as the total PCBs were significantly correlated with soil hyphal length (P < 0.01). Real-time quantitative PCR results indicated that the Rhodococcus-like bphC gene was 2–3 orders of magnitude more than that of Pseudomonas-like bphC gene, and was found responded positively to AMF. Phylogenetic analyses of the 16S rDNA sequenced by the Illumina Miseq sequencing platform indicated that AMF hyphae altered bacterial community compositions. The phylum Betaproteobacteria and Actinobacteria were dominated in the soil, while Burkholderiales and Actinomycetales were dominated at the order level. Taxa from the Comamonadaceae responded positively to AMF and trichlorinated biphenyl dissipation, while taxa from the Oxalobacteraceae and Streptomycetaceae responded negatively to AMF and PCB congener dissipation. Our results suggested that the AMF hyphal exudates as well as the hyphae per se did have quantitative effects on shaping soil microbial community, and could modify the PCBs dissipation processes consequently.
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Affiliation(s)
- Hua Qin
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang UniversityHangzhou, China; Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, School of Environmental and Resource Sciences, Zhejiang A & F UniversityLin'an, China
| | - Philip C Brookes
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University Hangzhou, China
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University Hangzhou, China
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Transcriptome analysis of Glomus mosseae/Medicago sativa mycorrhiza on atrazine stress. Sci Rep 2016; 6:20245. [PMID: 26833403 PMCID: PMC4735738 DOI: 10.1038/srep20245] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 12/30/2015] [Indexed: 11/08/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) protect host plants against diverse biotic and abiotic stresses, and promote biodegradation of various contaminants. In this study effect of Glomus mosseae/Medicago sativa mycorrhiza on atrazine degradation was investigated. It was observed that the atrazine degradation rates with any addition level in mycorrhizal treatments were all significantly higher than those in non-mycorrhizal treatments. When atrazine was applied at 20 mg kg(-1), the removal efficiency was up to 74.65%. Therefore, G. mosseae can be considered as ideal inhabitants of technical installations to facilitate phytoremediation. Furthermore, a total of 10.4 Gb was used for de novo transcriptome assembly, resulting in a comprehensive data set for the identification of genes corresponding to atrazine stress in the AM association. After comparative analysis with edgeR, a total of 2,060 differential expressed genes were identified, including 570 up-regulated genes and 1490 down-regulated genes. After excluding 'function unknown' and 'general function predictions only' genes, 172 up-regulated genes were obtained. The differentially expressed genes in AM association with and without atrazine stress were associated with molecular processes/other proteins, zinc finger protein, intracellular/extracellular enzymes, structural proteins, anti-stress/anti-disease protein, electron transport-related protein, and plant growth associated protein. Our results not only prove AMF has important ecological significance on atrazine degradation but also provide evidence for the molecular mechanisms of atrazine degradation by AMF.
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