What factors drive the variations of phytoplankton, ciliate and mesozooplankton communities in the polluted southern coast of Sfax, Tunisia?

First insight of genetic diversity, phylogeographic relationships, and population structure of marine sponge Chondrosia reniformis from the eastern and western Mediterranean coasts of Tunisia

Despite the strategic localization of Tunisia in the Mediterranean Sea, no phylogeographic study on sponges has been investigated along its shores. The demosponge Chondrosia reniformis, descript only morphologically along Tunisian coasts, was chosen to estimate the influence of natural oceanographic and biogeographic barriers on its genetic differentiation and its Phylogeography. The cytochrome oxidase subunit I (COI) gene was amplified and analyzed for 70 Mediterranean Chondrosia reniformis, collected from eight localities in Tunisia. Polymorphism results revealed high values of haplotype diversity (H d) and very low nucleotide diversity (π). Thus, these results suggest that our sponge populations of C. reniformis may have undergone a bottleneck followed by rapid demographic expansion. This suggestion is strongly confirmed by the results of neutrality tests and "mismatch distribution." The important number of haplotypes between localities and the high genetic differentiation (F st ranged from 0.590 to 0.788) of the current C. reniformis populations could be maintained by the limited gene flow Nm (0.10-0.18). Both haplotype Network and the biogeographic analysis showed a structured distribution according to the geographic origin. C. reniformis populations are subdivided into two major clades: Western and Eastern Mediterranean. This pattern seems to be associated with the well-known discontinuous biogeographic area: the Siculo-Tunisian Strait, which separates two water bodies circulating with different hydrological, physical, and chemical characteristics. The short dispersal of pelagic larvae of C. reniformis and the marine bio-geographic barrier created high differentiation among populations. Additionally, it is noteworthy to mention that the "Mahres/Kerkennah" group diverged from Eastern groups in a single sub-clade. This result was expected, the region Mahres/Kerkennah, presented a particular marine environment.

q-PCR-based assay for the toxic dinoflagellate Karenia selliformis monitoring along the Tunisian coasts

Karenia selliformis is a marine dinoflagellate responsible for fish-kill events. Its presence has been reported along the Tunisian coasts (south-eastern Mediterranean Sea) since the 1990s. In the present study, a quantitative-PCR assay, based on the internal transcribed spacer (ITS) molecular marker, was developed to detect and quantify K. selliformis in environmental bivalve mollusk samples and in seawater samples. The assay was optimized, and its specificity was confirmed using cross-reactivity experiments against microalgal species commonly found on the Tunisian coasts and/or closely related to K. selliformis. Calibration curves were performed by tenfold dilutions of plasmid DNA harboring target sequence and genomic DNA, attaining a limit of detection of around 5 copies of target DNA per reaction, far below one K. selliformis cell per reaction. The field application of the developed assay showed a powerful detection capability. Thus, the designed assay could contribute to the deployment of in-field diagnostic tools for K. selliformis blooms monitoring.

Quantitative PCR assay for the simultaneous identification and enumeration of multiple Karenia species

Quantitative PCR (qPCR) is the method of choice for specific detection and quantification of harmful algal bloom (HAB) species. Development of qPCR assay for simultaneous enumeration of species that frequently co-exist in HABs is required. A high sensitivity TaqMan qPCR assay, using probe and primers, located at ITS1-5.8S-ITS2 rDNA region, detecting, specifically, Karenia selliformis, K. bidigitata, and K. mikimotoi, was designed. ITS1-5.8S-ITS2 rDNA region copy numbers per Karenia cell genome were estimated to 217.697 ± 67.904, allowing cell quantification. An application of the designed methodology in field samples has been conducted, and it showed high sensitivity (detection of around 10^-1 cell/100 mg of bivalve mollusk tissue, equivalent to about 20 copies of the target sequence). We suggest that the optimized method could contribute to early detection of three closely related Karenia species in seafood cultivating areas to promote control quality, guarantee a fast and effective intervention, and improve public health prevention.

Environmental factors controlling the dynamics of phytoplankton communities during spring and fall seasons in the southern Sunda Shelf

Phytoplankton play important roles in marine ecosystems and have major impacts on the global biogeochemical cycles, yet the knowledge of the processes for oceanic environments controlling the phytoplankton dynamics still needs to be improved, particularly in the coastal ecosystems. Monitoring diversity of phytoplankton communities, including micro/nano- and pico-forms, as well as their dynamics in relation to environmental factors, is thus of critical significance. Here, we conducted two cruises in the southern Sunda Shelf during spring and fall 2016 to investigate the community structure and dynamics of phytoplankton assemblages in relation to environmental factors combining microscopy and flow cytometry. Micro/nanophytoplankton communities changed from Trichodesmium spp. and diatoms co-dominance in spring to communities dominated by Trichodesmium spp. in fall. Diatoms were a highly diverse group, with 78 species, followed by dinoflagellates (35 species). Differences in average abundance of micro/nanophytoplankton between spring and fall might be attributed to the shift in dominance of Trichodesmium spp. and diatoms. Picophytoplankton characterized by a great abundance of picocyanobacteria were dominated by Synechococcus. The dynamics of picophytoplankton during spring and fall might be associated with the differences in dominant Synechococcus strains. Environmental variables had significant influence on the dynamics of phytoplankton communities, especially nitrate and silicate. Silicate was a major driver responsible for the variations of micro/nanophytoplankton. Low silicate potentially limited the diatom growth during fall, leading to the overwhelming dominance of Trichodesmium spp. Picophytoplankton showed positive correlations with nitrate and silicate, suggesting that these nutrients collectively controlled variations in picophytoplankton communities during spring and fall.

Response of phytoplankton to banana cultivation: A case study of Lancang-Mekong River, southwestern China

This study examined the possible effects of banana cultivation on phytoplankton biomass and community structure in southwest China along the Lancang-Mekong River. Water and phytoplankton samples were collected on March (dry season) and August (rainy season), and physical-chemical properties of water, phytoplankton biomass and community structure were determined. The results indicated that the banana cultivation resulted in increases in sediment, total phosphorus (TP) and total nitrogen (TN) concentrations at estuaries of Lancang-Mekong River branches. Cultivation decreased phytoplankton diversity, abundance and biomass, as well as changed the phytoplankton community structure at estuaries of branches. Sediment concentration (increased by cultivation) was considered as the dominant influence factor of phytoplankton biomass and community structure. However, at downstream sites (primary channel), banana cultivation did not cause (result from its huge flow) the significant changes in physical-chemical properties of water, phytoplankton biomass or community structure.

First investigation of trace metal distribution in surface seawater and copepods of the south coast of Sfax (Tunisia)

The increased metal loading from anthropogenic sources has affected aquatic ecosystems and has cascaded through food webs worldwide. Therefore, the evaluation of ecological impacts of anthropogenic metal has become increasingly important. In this paper, we monitored the concentration of six trace metals (Cd, Cu, Fe, Ni, Pb, and Zn) in the three copepod groups (cyclopoida, calanoida, and harpacticoida) and in seawater samples collected from the south coast of Sfax (Tunisia). Results showed that the concentration of Fe and Zn for all copepod groups was higher than that for other metals and that of Cd was the lowest in all groups. The mean increase in bioconcentration factor of metals in copepods ranged from 0.05 to 18.93 and followed the sequence Zn (18.93) > Fe (14.34) > Pb (6.41) > Cd (1.53) > Cu (0.10) > Ni (0.05). The copepods in the south coast of Sfax were found to have a great capacity to accumulate trace metals and act as contamination indicators. Comparative studies with those from the Luza zone indicate considerable bioaccumulation of trace metals (Pb and Ni) in all copepod groups namely in cyclopoida.

Biodiversity effects on resource use efficiency and community turnover of plankton in Lake Nansihu, China

The relationship between biodiversity and ecosystem functioning is a central issue in ecology, especially in aquatic ecosystems due to the ecophysiological characteristics of plankton. Recently, ecologists have obtained conflicting conclusions while analyzing the influence of species diversity on plankton resource use efficiency (RUE) and community turnover. In this study, both phytoplankton and zooplankton communities were investigated seasonally from 2011 to 2013 in Lake Nansihu, a meso-eutrophic and recovering lake in China. The effects of phytoplankton diversity on RUE of phytoplankton (RUE_PP), zooplankton (RUE_ZP), and community turnover were analyzed. Results showed that both phytoplankton species richness and evenness were positively correlated with RUE_PP. RUE_ZP had a negative relationship with phytoplankton species richness, but a weak unimodal relationship with phytoplankton evenness. Cyanobacteria community had the opposite influence on RUE_PP and RUE_ZP. Thus, cyanobacteria dominance will benefit RUE_PP in eutrophic lakes, but the growth and reproduction of zooplankton are greatly limited. The strong negative relationship between total phosphorus and RUE_ZP confirmed these results. Phytoplankton community turnover tended to decrease with increasing phytoplankton evenness, which was consistent with most previous studies. The correlation coefficient between phytoplankton species richness and community turnover was negative, but not significant (p > 0.05). Therefore, phytoplankton community turnover was more sensitive to the variation of evenness than species richness. These results will be helpful in understanding the effects of species diversity on ecosystem functioning in aquatic ecosystems.

Assessment of heavy metal contamination levels and toxicity in sediments and fishes from the Mediterranean Sea (southern coast of Sfax, Tunisia)

Contamination of heavy metals in sediment is regarded as a global crisis with a large share in industrializing cities like Sfax (Tunisia). Seven heavy metals such as Cadmium (Cd), Copper (Cu), Iron (Fe), Mercury (Hg), Nickel (Ni), Lead (Pb), and Zinc (Zn), and one metalloid such as Arsenic (As) in sediments and fish (D. annularis, L. aurata, and S. vulgaris) were investigated from the Southern coast of Sfax in Tunisia. The range of metals in sediments were 13.11-36; 4.42-7.92; 8.23-28.56; 50,564-11,956; 2.9-6.8; 9.13-30.51; 65.06-151.50, and 47-546 kg(-1) DW for As, Cd, Cu, Fe, Hg, Ni, Pb, and Zn. The level of studied metals in sediment samples exceeded the limits of the quality assessment guidelines (SQGs). The potential ecological risk index (PERI) proved that the investigated region could pose moderate risk for the aquatic biota. Metal bioaccumulation in the fish muscles varied significantly among species. Indeed, S. vulgaris and D. annularis accumulated higher amount of metal than L. aurata. The target hazard quotients (THQ) of individual heavy metals in fish, except for As and Hg, revealed safe levels for human consumption. Nevertheless, the total THQ indexes exceeded 1 suggesting the combined effects on muscles fish, which may constitute a risk to population's health.

Heavy metal accumulation in Diplodus annularis, Liza aurata, and Solea vulgaris relevant to their concentration in water and sediment from the southwestern Mediterranean (coast of Sfax)

The concentrations of heavy metals (Cd, Cu, Fe, Pb, Ni, and Zn) were measured in the liver, gills, and muscle of Solea vulgaris, Liza aurata, and Diplodus annularis, collected from the south coast of Sfax (Gabes Gulf, southwestern Mediterranean). The concentrations of heavy metals in water exhibited the following decreasing order (expressed in μg l(-1)): Fe > Ni > Zn > Cu > Pb > Cd whereas the trend is somewhat different in sediments (mg kg(-1) D.W.) Fe > Zn > Pb > Ni > Cu > Cd. The levels of heavy metals varied significantly among fish species and tissues. Heavy metal levels were found generally higher in the liver and gills than the muscle in all species. The liver was the target organ for Cd, Cu, Fe, Ni, and Zn accumulation. Nickel and lead, however, exhibited their highest concentrations in the gills. The three studied fishes showed a difference in metals accumulation decreasing in following order S. vulgaris > D. annularis > L. aurata. Solea vulgaris with the highest TFwater, TFsediment, and metal concentrations in tissues would be considered as a potential bio-indicator in the south coast of Sfax for the assessment of environmental pollution status. Comparative studies with Luza zone indicate considerable bioaccumulation of heavy metals (Pb and Zn) in the various tissues of fish samples of the south coast of Sfax.

Assessment of anthropogenic inputs in the surface waters of the southern coastal area of Sfax during spring (Tunisia, Southern Mediterranean Sea)

The coastal marine area of Sfax (Tunisia), which is well-known for its high productivity and fisheries, is also subjected to anthropogenic inputs from diverse industrial, urban and agriculture activities. We investigated the spatial distribution of physical, chemical and biogeochemical parameters in the surface waters of the southern coastal area of Sfax. Pertinent tracers of anthropogenic inputs were identified. Twenty stations were sampled during March 2013 in the vicinity of the coastal areas reserved for waste discharge. Phosphogypsum wastes dumped close to the beaches were the main source of PO4(3-), Cl(-) and SO4(2-) in seawater. The high content in total polyphenolic compounds was due to the olive oil treatment waste water released from margins. These inorganic and organic inputs in the surface waters were associated with elevated COD. The BOD5/COD (<0.5) and COD/BOD5 (>3) ratios highlighted a chemical pollution with organic load of a low biodegradability.