Fuzzy risk assessment of modified polychlorinated naphthalenes for enhanced degradation

Molecular design of environment-friendly amide herbicide substitutes with high efficacy, low phytotoxicity and medication safety

The primary goal of this investigation was to formulate an ecologically sustainable alternative to amide herbicides (AHs) characterized by robust herbicidal effectiveness, minimal corn phytotoxicity, and commendable pharmaceutical safety. We employed comparative molecular similarity index analysis (CoMSIA), a three-dimensional quantitative structure-activity relationship (3D-QSAR) model, which systematically outlined parameters such as herbicidal effectiveness, corn phytotoxicity, and AHs biodegradability. Subsequently, after thorough evaluation, we carefully selected a group of fourteen stable AH-substitute compounds known for their safety and environmental compatibility, considering aspects like pharmacokinetics, toxicokinetics, functional properties, and environmental friendliness. This resulted in a significant increase in herbicidal effectiveness, ranging from 21.64% to 34.07%, alongside a decrease in corn phytotoxicity within the range of 12.19-20.87%. Furthermore, we achieved an improvement in biodegradability, measured within the spectrum of 4.92-9.40%. Importantly, these changes also correlated with the reduction of hepatotoxicity, mutagenicity, and cutaneous health risks. Finally, we delved into the mechanisms underlying the improved herbicidal effectiveness, reduced corn phytotoxicity, and enhanced biodegradability of AHs substitutes through molecular docking and analysis of amino acid interactions. The investigation concluded that non-covalent forces governing the interaction between AHs substitutes and receptor proteins are crucial in determining herbicidal effectiveness, corn phytotoxicity, and biodegradability. Specifically, Van der Waals and electrostatic forces emerged as key factors governing the binding affinities of AH molecules with receptor proteins, both before and after modification. In summary, this study introduces innovative approaches in the field of agricultural chemical weeding technology and provides a theoretical framework for the environmentally responsible management of AHs herbicides.

Molecular design of high-efficacy and high drug safety Fluoroquinolones suitable for a variety of aerobic biodegradation bacteria

The present study attempted to improve the biodegradation removal rate of Fluoroquinolones (FQs) in sewage treatment plants. The similarity index analysis (CoMSIA) model for combined biodegradability was constructed, and 33 kinds of molecular derivatives of FQs suitable for a variety of aerobic biodegradation microorganisms were designed. Further, derivative-20 and derivative-28, with high drug efficiency, drug safety, and environmental friendliness were selected through pharmacokinetics (ADMET), toxicokinetics (TOPKAT), FQs functional characteristics, and environmental friendliness evaluations. Compared with the target molecules, the combined biodegradability of the above two FQ-derivative molecules were increased by 193.57 % and 205.07 %, respectively, while their environment-friendly characteristics were improved to a certain degree. Through molecular docking and molecular dynamic simulation analysis, it showed that van der Waals force (decreased by 2.73 %-61.74 %) was the main factor influencing the binding ability of the modified FQ molecules to the receptor proteins. In addition, the relationship among the non-bonding interaction resultant force, the binding effect of the FQ-derivative molecules, and the receptor protein-related amino acid residues were studied for the first time. It was observed that the higher the value of the non-bonding interaction resultant force, the better was the binding effect, which demonstrating the significantly improved biodegradability of the designed FQ-derivative molecules.

Bioassay- and QSAR-based screening of toxic transformation products and their formation under chlorination treatment on levofloxacin

Levofloxacin (LEV) is a broad-spectrum quinolone antibiotic and widely used for human and veterinary treatment. Overuse of LEV leads to its frequent occurrence in the water environment. In this study, the transformation characteristics of LEV in water during the simulated chlorination disinfection treatment were explored. Fifteen major transformation products (TPs) of LEV were identified, and their plausible formation pathways were proposed. The reaction pathways were strongly dependent on pH condition, and LEV removal was relevant to free available chlorine (FAC) dose. Antibacterial activity of chlorination system was dramatically declined when FAC was more than 3-equivalent (eq) due to the elimination of antibacterial related functional groups. Genotoxicity of chlorination system increased more than 3 times at 0.5-eq of FAC and then decreased with increasing FAC dose, which were in accordance with the relative concentration of toxic TPs estimated by QSAR model. These results implied that the combination of bioassay, QSAR computation and chemical analysis would be an efficient method to screen toxic TPs under chlorination treatment. It is anticipated that the results of this study can provide reference for optimizing operational parameters for water disinfection treatment, and for scientifically evaluating the potential risk of quinolone antibiotics.

Environment-friendly PCN derivatives design and environmental behavior simulation based on a multi-activity 3D-QSAR model and molecular dynamics

A multi-activity three-dimensional quantitative structure-activity relationship (3D-QSAR) model was established based on the comprehensive evaluation index (CEI) of polychlorinated naphthalenes (PCNs). The CEI values were calculated using the vector analysis method in combination with the following parameters: biological toxicity (predicted by logEC₅₀), bioconcentration (predicted by logK_ow), long-distance migration (predicted by logP_L), and biodegradation (predicted by total-score). Additionally, sixty-four CN-70 derivatives with lower CEI values were designed, among which three derivatives with reduced CEI values were selected for verification based on an evaluation of their persistent organic pollutant properties and practicability. Finally, an environmental behavior simulation was conducted via molecular dynamics simulation aided by the Taguchi experimental design by considering the degradation characteristics of the three aforementioned CN-70 derivatives as an example. Only two of the selected CN-70 derivatives were observed to be more easily degraded when compared with the CN-70 molecule (ascending range: 11.57 %-13.57 %) in a real-world setting, which was consistent with the biodegradability prediction results (ascending range: 14.94 %-22.49 %) obtained through the molecular docking studies. The multi-activity 3D-QSAR model established in this study overcame the limitations of generating molecular designs based on single-effect models from the source because it focused on the multiple effects of the pollutants.

Norm index-based QSPR model for describing the n-octanol/water partition coefficients of organics

The n-octanol/water partition coefficient (logK_ow) is widely used in the environmental, agricultural and pharmaceutical fields for the risk evaluation and application of organic chemicals. In this work, grounded on atomic distribution matrices, a norm index-based QSPR model was built for organic chemicals with 18 kinds of diverse structures. The statistical results (R² = 0.9037, RMSE = 0.4515) showed that the QSPR model for describing the logK_ow of organics was fitted well. Various validation results showed that the model had good robustness, good predictability and wide applicability. These satisfactory results indicated that the model was applicable for the logK_ow description of organic chemicals and that norm descriptors were reliable and general for the description of organic structures. The model was relatively better at describing logK_ow for aromatics, alcohols, nitriles, esters, amides, halogenated compounds, acids and amine compounds. The intensity of spatial branching and the space charge distribution intensity descriptors could have a greater impact on the logK_ow value of a compound.

Law and mechanism analysis of biodegradability of polychlorinated naphthalenes based on principal component analysis, QSAR models, molecular docking and molecular dynamics simulation

The quantization parameters, infrared and Raman spectra of 75 polychlorinated naphthalenes (PCNs) and 42 environmentally friendly CN-56 (CN-56: No. 56 PCN molecule; 1, 2, 3, 7, 8-PentaCN) molecules that are easier to degrade were first calculated via the density functional theory (DFT) method, and the structural characteristics of the molecules were analysed to obtain the substituent characteristics. The principal component analysis method was used to systematically analyse and summarize the effects of macroscopic substituent characteristics, microscopic quantitative parameters and spectral information on the biodegradability of PCNs and 42 environmentally friendly CN-56 molecules, and then the quantitative structure-activity relationship (QSAR), molecular docking and molecular dynamics simulation methods were used to further investigate the biodegradation mechanism from the perspective of molecules and protein receptors. The results showed that PCNs and new PCNs extracted 5 and 6 principal components from 21 kinds of original parameter indicators, respectively, which can effectively explain the original variable information. Besides that, electrostatic activity is the primary factor affecting the degradation of PCNs; reducing the para-substitution logarithm or increasing the total number of substituents and introducing electrostatic groups in the ortho or meta position of PCN molecules can design new PCN derivatives with higher degradability; enhancing the irradiation of Raman light or reducing the irradiation of infrared light properly can increase the biodegradation rate of PCN molecules.