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Wang X, Shu J, Ni T, Xu C, Xu B, Liu X, Zhang K, Jiang W. Transesterification of RNA model induced by novel dinuclear copper (II) complexes with bis-tridentate imidazole derivatives. J Biol Inorg Chem 2023:10.1007/s00775-023-02000-6. [PMID: 37140680 DOI: 10.1007/s00775-023-02000-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 04/15/2023] [Indexed: 05/05/2023]
Abstract
Two novel bis-tridentate imidazole derivatives were conveniently synthesized using a 'one-pot' method. Their dinuclear (Cu2L1Cl4, Cu2L2Cl4) and mononuclear (CuL1Cl2, CuL2Cl2∙H2O) copper (II) complexes were synthesized to comparably evaluate their reactivities in the hydrolytic cleavage of 2-hydroxypropyl p-nitrophenyl phosphate (HPNP) as a classic RNA model. Single crystals of Cu2L1Cl4 and Cu2L2Cl4 indicate that both of them are centrosymmetric, and each central copper ion is penta-coordinated. Regarding the transesterification of HPNP, both of dinuclear ones exhibited excess one order of magnitude rate enhancement in contrast with auto-hydrolysis reaction. Under comparable conditions, dinuclear complexes displayed no more than twofold increase in activity over their mononuclear analogues, which verifies the lack of binuclear cooperation effect due to long Cu-to-Cu space.
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Affiliation(s)
- Xiuyang Wang
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
| | - Jun Shu
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
| | - Tong Ni
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
| | - Chengxu Xu
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
| | - Bin Xu
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
- Key Laboratory of Green Catalysis of Sichuan Institute of High Education, Sichuan University of Science and Engineering, Sichuan, 643000, Zigong, People's Republic of China
| | - Xiaoqiang Liu
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
- Key Laboratory of Green Catalysis of Sichuan Institute of High Education, Sichuan University of Science and Engineering, Sichuan, 643000, Zigong, People's Republic of China
| | - Kaiming Zhang
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China
- Key Laboratory of Green Catalysis of Sichuan Institute of High Education, Sichuan University of Science and Engineering, Sichuan, 643000, Zigong, People's Republic of China
| | - Weidong Jiang
- School of Chemistry and Environmental Engineering, Sichuan University of Science and Engineering, Zigong, 643000, Sichuan, People's Republic of China.
- Key Laboratory of Green Catalysis of Sichuan Institute of High Education, Sichuan University of Science and Engineering, Sichuan, 643000, Zigong, People's Republic of China.
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Hormann J, Verbitsky O, Zhou X, Battistella B, van der Meer M, Sarkar B, Zhao C, Kulak N. Experimental and computational investigation of heteroatom substitution in nucleolytic Cu(II) cyclen complexes for balancing stability and redox activity. Dalton Trans 2023; 52:3176-3187. [PMID: 36790350 DOI: 10.1039/d2dt03284h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Cu(II) complexes of cyclen-based ligands CuL1-CuL6 were synthesized and characterized. The corresponding ligands L1-L6 comprise different donor sets including S and O atoms. Whereas cyclen (L1) is commercially available, L2-L6 were synthesized according to protocols available in the literature. Cleavage activity of the complexes towards plasmid DNA was tested in the presence and absence of ascorbate as a reducing agent (oxidative vs. hydrolytic cleavage). As previously shown, the substitution of N donor atoms with hard donor O atoms leads to efficient oxidative nucleases, but dissociation of the complex upon reduction. We thus opted for S substitution (soft donors) to stabilize the reduced Cu(I) species. Increasing the S content, however, leads to species that are difficult to reoxidize in order to ensure efficient oxidative DNA cleavage. We are showing by experimental (cyclic voltammetry) and computational means (DFT) that the rational combination of O and S atoms next to two nitrogen donors within the macrocycle (oxathiacyclen complex CuL6) leads to the stabilization of both redox states. The complex thus exhibits the highest oxidative DNA cleavage activity within this family of cyclen-based Cu(II) complexes - without leaching of the metal ion during reduction.
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Affiliation(s)
- Jan Hormann
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 34/36, 14195 Berlin, Germany
| | - Olga Verbitsky
- Institut für Chemie, Otto-von-Guericke-Universität, Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany.
| | - Xiaoyu Zhou
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University, XinGang Rd. W., Guangzhou 510275, China.
| | - Beatrice Battistella
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 34/36, 14195 Berlin, Germany.,Department of Chemistry, Humboldt Universität zu Berlin, Brook-Taylor-Str. 2, 12489 Berlin, Germany
| | - Margarete van der Meer
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 34/36, 14195 Berlin, Germany
| | - Biprajit Sarkar
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 34/36, 14195 Berlin, Germany.,Institut für Anorganische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Cunyuan Zhao
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University, XinGang Rd. W., Guangzhou 510275, China.
| | - Nora Kulak
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 34/36, 14195 Berlin, Germany.,Institut für Chemie, Otto-von-Guericke-Universität, Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany.
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Goldmeier MN, Katz S, Glaser F, Belakhov V, Khononov A, Baasov T. Toward Catalytic Antibiotics: Redesign of Fluoroquinolones to Catalytically Fragment Chromosomal DNA. ACS Infect Dis 2021; 7:608-623. [PMID: 33448785 DOI: 10.1021/acsinfecdis.0c00777] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A library of ciprofloxacin-nuclease conjugates was designed and synthesized to investigate their potential as catalytic antibiotics. The Cu(II) complexes of the new designer compounds (i) showed excellent in vitro hydrolytic and oxidative DNase activity, (ii) showed good antibacterial activity against both Gram-negative and Gram-positive bacteria, and (iii) proved to be highly potent bacterial DNA gyrase inhibitors via a mechanism that involves stabilization of the fluoroquinolone-topoisomerase-DNA ternary complex. Furthermore, the Cu(II) complexes of two of the new designer compounds were shown to fragment supercoiled plasmid DNA into linear DNA in the presence of DNA gyrase, demonstrating a "proof of concept" in vitro. These ciprofloxacin-nuclease conjugates can therefore serve as models with which to develop next-generation, in vivo functioning catalytic antimicrobials.
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Affiliation(s)
- Moshe N. Goldmeier
- Edith and Joseph Fischer Enzyme Inhibitors Laboratory, Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| | - Sofya Katz
- Edith and Joseph Fischer Enzyme Inhibitors Laboratory, Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| | - Fabian Glaser
- The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel
| | - Valery Belakhov
- Edith and Joseph Fischer Enzyme Inhibitors Laboratory, Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| | - Alina Khononov
- Edith and Joseph Fischer Enzyme Inhibitors Laboratory, Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Haifa 3200003, Israel
| | - Timor Baasov
- Edith and Joseph Fischer Enzyme Inhibitors Laboratory, Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Haifa 3200003, Israel
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Zhang H, Yu W, Wang Z, Luo M, Liu S, Hua R, Wu K. Adsorptive uptake Th(IV) by red soil and black soil. J Radioanal Nucl Chem 2019. [DOI: 10.1007/s10967-019-06799-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Hormann J, van der Meer M, Sarkar B, Kulak N. From Cyclen to 12-Crown-4 Copper(II) Complexes: Exchange of Donor Atoms Improves DNA Cleavage Activity. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500596] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Zhang F, Lin QY, Li SK, Zhao YL, Wang PP, Chen MM. Synthesis, interaction with DNA and bovine serum albumin of the transition metal complexes of demethylcantharate and 2-aminobenzothiazole. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 98:436-443. [PMID: 22995471 DOI: 10.1016/j.saa.2012.08.074] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Revised: 08/17/2012] [Accepted: 08/24/2012] [Indexed: 06/01/2023]
Abstract
Four new transition metal complexes (Habtz)(2)[M(DCA)(2)]·6H(2)O (M=Co(II) (1), Ni(II) (2), Cu(II) (3), Zn(II) (4); DCA=demethylcantharate, 7-oxabicyclo [2.2.1]heptane-2,3-dicarboxylate, C(8)H(8)O(5); Habtz=2-aminobenzothiazole acid, C(7)H(7)N(2)S) were synthesized and characterized by elemental analysis, molar conductance, infrared spectra and thermogravimetric analysis. The coordination number of complex was six. The X-ray diffraction analysis indicated that complex 3 crystallized in the triclinic crystal system with P1¯ space group. The DNA-binding properties of the complexes were investigated by electronic absorption spectra, fluorescence spectra, viscosity measurements. Title complexes could bind to DNA via partial intercalative mode. The K(b) of the complexes were 5.33×10(4) (1), 7.04×10(4) (2), 9.91×10(4) (3) and 5.03×10(4) L mol(-1) (4). The results of agarose gel electrophoresis showed that Cu(II) complex could cleave pBR322 plasmid DNA via radical-based mechanism. The complexes could quench the intrinsic fluorescence of bovine serum albumin (BSA) through a static quenching with the binding constants K(a) of 1.11×10(4) (1), 1.24×10(6) (2), 8.42×10(5) (3) and 1.75×10(4) L mol(-1) (4). The complexes had intense antiproliferative activities against human hepatoma cell lines (SMMC7721) and human gastric cancer cells (MGC80-3) lines in vitro. Cu(II) complex had the strongest activity against human gastric cancer cells.
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Affiliation(s)
- Fan Zhang
- Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Zhejiang Normal University, Jinhua 321004, PR China
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Wang MQ, Zhang J, Zhang Y, Zhang DW, Liu Q, Liu JL, Lin HH, Yu XQ. Metal-free cleavage efficiency toward DNA by a novel PNA analog-bridged macrocyclic polyamine. Bioorg Med Chem Lett 2011; 21:5866-9. [PMID: 21855339 DOI: 10.1016/j.bmcl.2011.07.097] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2011] [Revised: 07/18/2011] [Accepted: 07/26/2011] [Indexed: 10/17/2022]
Abstract
In this report we describe the synthesis of a new class of cyclen-contained compounds with novel peptide nucleic acid (PNA) analog motif. Target bis-cyclen derivative B was prepared and characterized by ESI-MS, NMR and HPLC. Interactions between compound B and calf thymus DNA were studied by thermal denaturation. Results indicate that the DNA binding affinity of B is stronger than that of mono-cyclen compound A, and the binding ability is little affected by the change of ionic strength. Agarose and denaturing polyacrylamide gel electrophoresis were used to assess the DNA cleavage activities. The macrocyclic polyamine-PNA analog conjugate B as a nuclease model can effectively cleave DNA via an oxidative pathway at micromolar concentration (10 μM) without the use of any additional metal ions. Meanwhile, the mono-cyclen compound A shows nearly no DNA cleavage effect under the same conditions.
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Affiliation(s)
- Ming-Qi Wang
- Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, Sichuan, PR China
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Liu JL, Ma QP, Huang QD, Yang WH, Zhang J, Wang JY, Zhu W, Yu XQ. Cationic lipids containing protonated cyclen and different hydrophobic groups linked by uracil-PNA monomer: synthesis and application for gene delivery. Eur J Med Chem 2011; 46:4133-41. [PMID: 21757268 DOI: 10.1016/j.ejmech.2011.06.015] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Revised: 06/09/2011] [Accepted: 06/09/2011] [Indexed: 02/05/2023]
Abstract
In this report, as candidates for non-viral gene vectors, cationic lipids L1, L2 and L3 based on protonated cyclen and different hydrophobic groups (cholesterol, dodecanol or diosgenin) linked by PNA monomer were designed and synthesized. Their liposomes were easily prepared by mixing the synthesized lipids with dioleoylphosphatidyl ethanolamine (DOPE) under appropriate mole ratios. Agarose gel retardation and fluorescent titration by ethidium bromide (EB) showed the strong DNA-binding ability with the K(sv) values of 1.21 × 10(7), 3.76 × 10(6) and 2.90 × 10(6) M(-1) for the liposomes formed from L1-L3, respectively. These liposomes could retard pDNA at an N/P ratio of 3 and form lipoplexes with sizes around 200-300 nm and zeta-potential values of +20-50 mV at N/P ratio from 4 to 10. Besides, the cytotoxicity of the three lipoplexes assayed by MTT is quite different. The results from in vitro transfection in HEK 293T and A549 cell lines showed that the transfection efficiency of L3/DOPE/DNA lipoplex at an N/P ratio of 6 and lipid/DOPE mole ratio of 1:2 is slightly higher than that of Lipofectamine 2000™, indicating that the title PNA monomer-based cationic lipids have great potential to be efficient non-viral gene vector.
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Affiliation(s)
- Jun-Liang Liu
- Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610064, People's Republic of China
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