Stochastic Chlamydia Dynamics and Optimal Spread

Euo is a developmental regulator that represses late genes and activates midcycle genes in Chlamydia trachomatis

IMPORTANCE

In this study, we developed a correlative approach that combined DNA immunoprecipitation-seq and RNA-seq analyses to define the regulon of the Chlamydia trachomatis transcription factor Euo. We confirmed the proposed role of Euo as a transcriptional repressor of late chlamydial genes but also showed that Euo activates transcription of a subset of midcycle genes and autoregulates its own expression via negative feedback. This study validates and expands the role of Euo as an important developmental regulator in C. trachomatis. In addition, this genome-wide correlative approach can be applied to study transcription factors in other pathogenic bacteria.

Stochastic Modeling of In Vitro Bactericidal Potency

We provide a Galton-Watson model for the growth of a bacterial population in the presence of antibiotics. We assume that bacterial cells either die or duplicate, and the corresponding probabilities depend on the concentration of the antibiotic. Assuming that the mean offspring number is given by [Formula: see text] for some [Formula: see text], where c stands for the antibiotic concentration we obtain weakly consistent, asymptotically normal estimator both for [Formula: see text] and for the minimal inhibitory concentration, a relevant parameter in pharmacology. We apply our method to real data, where Chlamydia trachomatis bacterium was treated by azithromycin and ciprofloxacin. For the measurements of Chlamydia growth quantitative polymerase chain reaction technique was used. The 2-parameter model fits remarkably well to the biological data.