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Horkaew P, Kupittayanant S, Kupittayanant P. Noninvasive in ovo sexing in Korat chicken by pattern recognition of its embryologic vasculature. J APPL POULTRY RES 2024; 33:100424. [DOI: 10.1016/j.japr.2024.100424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/26/2024] Open
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2
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Fakhouri HN, Alawadi S, Awaysheh FM, Alkhabbas F, Zraqou J. A cognitive deep learning approach for medical image processing. Sci Rep 2024; 14:4539. [PMID: 38402321 PMCID: PMC10894297 DOI: 10.1038/s41598-024-55061-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 02/20/2024] [Indexed: 02/26/2024] Open
Abstract
In ophthalmic diagnostics, achieving precise segmentation of retinal blood vessels is a critical yet challenging task, primarily due to the complex nature of retinal images. The intricacies of these images often hinder the accuracy and efficiency of segmentation processes. To overcome these challenges, we introduce the cognitive DL retinal blood vessel segmentation (CoDLRBVS), a novel hybrid model that synergistically combines the deep learning capabilities of the U-Net architecture with a suite of advanced image processing techniques. This model uniquely integrates a preprocessing phase using a matched filter (MF) for feature enhancement and a post-processing phase employing morphological techniques (MT) for refining the segmentation output. Also, the model incorporates multi-scale line detection and scale space methods to enhance its segmentation capabilities. Hence, CoDLRBVS leverages the strengths of these combined approaches within the cognitive computing framework, endowing the system with human-like adaptability and reasoning. This strategic integration enables the model to emphasize blood vessels, accurately segment effectively, and proficiently detect vessels of varying sizes. CoDLRBVS achieves a notable mean accuracy of 96.7%, precision of 96.9%, sensitivity of 99.3%, and specificity of 80.4% across all of the studied datasets, including DRIVE, STARE, HRF, retinal blood vessel and Chase-DB1. CoDLRBVS has been compared with different models, and the resulting metrics surpass the compared models and establish a new benchmark in retinal vessel segmentation. The success of CoDLRBVS underscores its significant potential in advancing medical image processing, particularly in the realm of retinal blood vessel segmentation.
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Affiliation(s)
- Hussam N Fakhouri
- Department of Data Science and Artificial Intelligence, The University of Petra, Amman, Jordan
| | - Sadi Alawadi
- Department of Computer Science, Blekinge Institute of Technology, Karlskrona, Sweden.
- Computer Graphics and Data Engineering (COGRADE) Research Group, University of Santiago de Compostela, Santiago de Compostela, Spain.
| | - Feras M Awaysheh
- Institute of Computer Science, Delta Research Centre, University of Tartu, Tartu, Estonia
| | - Fahed Alkhabbas
- Internet of Things and People Research Center, Malmö University, Malmö, Sweden
- Department of Computer Science and Media Technology, Malmö University, Malmö, Sweden
| | - Jamal Zraqou
- Virtual and Augment Reality Department, Faculty of Information Technology, University of Petra, Amman, Jordan
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Yi S, Wei Y, Zhang G, Wang T, She F, Yang X. Segmentation of retinal vessels based on MRANet. Heliyon 2022; 9:e12361. [PMID: 36685439 PMCID: PMC9852666 DOI: 10.1016/j.heliyon.2022.e12361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/27/2022] [Accepted: 12/07/2022] [Indexed: 12/23/2022] Open
Abstract
The segmentation of retinal vessel takes a crucial part in computer-aided diagnosis of diseases and eye disorders. However, the insufficient segmentation of the capillary vessels and weak anti-noise interference ability make such task more difficult. To solve this problem, we proposed a multi-scale residual attention network (MRANet) which is based on U-Net network. Firstly, to collect useful information about the blood vessels more effectively, we proposed a multi-level feature fusion block (MLF block). Then, different weights of each fused feature are learned by using attention blocks, which can retain more useful feature information while reducing the interference of redundant features. Thirdly, multi-scale residual connection block (MSR block) is constructed, which can better extract the image features. Finally, we use the DropBlock layer in the network to reduce the network parameters and alleviate network overfitting. Experiments show that based on DRIVE, the accuracy rate and the AUC performance value of our network are 0.9698 and 0.9899 respectively, and based on CHASE_DB1 dataset, they are 0.9755 and 0.9893 respectively. Our network has a better segmentation effect compared with other methods, which can ensure the continuity and completeness of blood vessel segmentation.
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Kako NA, Abdulazeez AM. Peripapillary Atrophy Segmentation and Classification Methodologies for Glaucoma Image Detection: A Review. Curr Med Imaging 2022; 18:1140-1159. [PMID: 35260060 DOI: 10.2174/1573405618666220308112732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/04/2021] [Accepted: 12/22/2021] [Indexed: 11/22/2022]
Abstract
Information-based image processing and computer vision methods are utilized in several healthcare organizations to diagnose diseases. The irregularities in the visual system are identified over fundus images shaped over a fundus camera. Among ophthalmology diseases, glaucoma is measured as the most common case that can lead to neurodegenerative illness. The unsuitable fluid pressure inside the eye within the visual system is described as the major cause of those diseases. Glaucoma has no symptoms in the early stages, and if it is not treated, it may result in total blindness. Diagnosing glaucoma at an early stage may prevent permanent blindness. Manual inspection of the human eye may be a solution, but it depends on the skills of the individuals involved. The auto diagnosis of glaucoma by applying a consolidation of computer vision, artificial intelligence, and image processing can aid in the ban and detection of those diseases. In this review article, we aim to introduce a review of the numerous approaches based on peripapillary atrophy segmentation and classification that can detect these diseases, as well as details about the publicly available image benchmarks, datasets, and measurement of performance. The review article introduces the demonstrated research of numerous available study models that objectively diagnose glaucoma via peripapillary atrophy from the lowest level of feature extraction to the current direction based on deep learning. The advantages and disadvantages of each method are addressed in detail, and tabular descriptions are included to highlight the results of each category. Moreover, the frameworks of each approach and fundus image datasets are provided. The improved reporting of our study would help in providing possible future work directions to diagnose glaucoma in conclusion.
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Affiliation(s)
- Najdavan A Kako
- Duhok Polytechnic University, Technical Institute of Administration, MIS, Duhok, Iraq
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Gao Z, Wang L, Soroushmehr R, Wood A, Gryak J, Nallamothu B, Najarian K. Vessel segmentation for X-ray coronary angiography using ensemble methods with deep learning and filter-based features. BMC Med Imaging 2022; 22:10. [PMID: 35045816 PMCID: PMC8767756 DOI: 10.1186/s12880-022-00734-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 01/04/2022] [Indexed: 11/25/2022] Open
Abstract
BACKGROUND Automated segmentation of coronary arteries is a crucial step for computer-aided coronary artery disease (CAD) diagnosis and treatment planning. Correct delineation of the coronary artery is challenging in X-ray coronary angiography (XCA) due to the low signal-to-noise ratio and confounding background structures. METHODS A novel ensemble framework for coronary artery segmentation in XCA images is proposed, which utilizes deep learning and filter-based features to construct models using the gradient boosting decision tree (GBDT) and deep forest classifiers. The proposed method was trained and tested on 130 XCA images. For each pixel of interest in the XCA images, a 37-dimensional feature vector was constructed based on (1) the statistics of multi-scale filtering responses in the morphological, spatial, and frequency domains; and (2) the feature maps obtained from trained deep neural networks. The performance of these models was compared with those of common deep neural networks on metrics including precision, sensitivity, specificity, F1 score, AUROC (the area under the receiver operating characteristic curve), and IoU (intersection over union). RESULTS With hybrid under-sampling methods, the best performing GBDT model achieved a mean F1 score of 0.874, AUROC of 0.947, sensitivity of 0.902, and specificity of 0.992; while the best performing deep forest model obtained a mean F1 score of 0.867, AUROC of 0.95, sensitivity of 0.867, and specificity of 0.993. Compared with the evaluated deep neural networks, both models had better or comparable performance for all evaluated metrics with lower standard deviations over the test images. CONCLUSIONS The proposed feature-based ensemble method outperformed common deep convolutional neural networks in most performance metrics while yielding more consistent results. Such a method can be used to facilitate the assessment of stenosis and improve the quality of care in patients with CAD.
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Affiliation(s)
- Zijun Gao
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.
| | - Lu Wang
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
| | - Reza Soroushmehr
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
- Michigan Center for Integrative Research in Critical Care (MCIRCC), University of Michigan, Ann Arbor, USA
| | - Alexander Wood
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
| | - Jonathan Gryak
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
| | - Brahmajee Nallamothu
- Department of Internal Medicine, University of Michigan, Ann Arbor, USA
- Division of Cardiovascular Diseases, University of Michigan, Ann Arbor, USA
| | - Kayvan Najarian
- Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
- Michigan Institute for Data Science (MIDAS), University of Michigan, Ann Arbor, USA
- Department of Emergency Medicine, University of Michigan, Ann Arbor, USA
- Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, USA
- Michigan Center for Integrative Research in Critical Care (MCIRCC), University of Michigan, Ann Arbor, USA
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Badawi SA, Fraz MM, Shehzad M, Mahmood I, Javed S, Mosalam E, Nileshwar AK. Detection and Grading of Hypertensive Retinopathy Using Vessels Tortuosity and Arteriovenous Ratio. J Digit Imaging 2022; 35:281-301. [PMID: 35013827 PMCID: PMC8921404 DOI: 10.1007/s10278-021-00545-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 11/09/2021] [Accepted: 11/11/2021] [Indexed: 10/19/2022] Open
Abstract
Hypertensive retinopathy (HR) refers to changes in the morphological diameter of the retinal vessels due to persistent high blood pressure. Early detection of such changes helps in preventing blindness or even death due to stroke. These changes can be quantified by computing the arteriovenous ratio and the tortuosity severity in the retinal vasculature. This paper presents a decision support system for detecting and grading HR using morphometric analysis of retinal vasculature, particularly measuring the arteriovenous ratio (AVR) and retinal vessel tortuosity. In the first step, the retinal blood vessels are segmented and classified as arteries and veins. Then, the width of arteries and veins is measured within the region of interest around the optic disk. Next, a new iterative method is proposed to compute the AVR from the caliber measurements of arteries and veins using Parr-Hubbard and Knudtson methods. Moreover, the retinal vessel tortuosity severity index is computed for each image using 14 tortuosity severity metrics. In the end, a hybrid decision support system is proposed for the detection and grading of HR using AVR and tortuosity severity index. Furthermore, we present a new publicly available retinal vessel morphometry (RVM) dataset to evaluate the proposed methodology. The RVM dataset contains 504 retinal images with pixel-level annotations for vessel segmentation, artery/vein classification, and optic disk localization. The image-level labels for vessel tortuosity index and HR grade are also available. The proposed methods of iterative AVR measurement, tortuosity index, and HR grading are evaluated using the new RVM dataset. The results indicate that the proposed method gives superior performance than existing methods. The presented methodology is a novel advancement in automated detection and grading of HR, which can potentially be used as a clinical decision support system.
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Affiliation(s)
- Sufian A Badawi
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Muhammad Moazam Fraz
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan.
| | - Muhammad Shehzad
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Imran Mahmood
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Sajid Javed
- Department of Electrical Engineering and Computer Science, Khalifa University, Abu Dhabi, UAE
| | - Emad Mosalam
- Department of Ophthalmology, RAK Medical and Health Sciences University, Ras Al Khaimah, UAE.,Department of Ophthalmology, Saqr Hospital, Ministry of Health and Prevention, Ras Al Khaimah, UAE
| | - Ajay Kamath Nileshwar
- Department of Ophthalmology, RAK Medical and Health Sciences University, Ras Al Khaimah, UAE.,Department of Ophthalmology, Saqr Hospital, Ministry of Health and Prevention, Ras Al Khaimah, UAE
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Garg M, Gupta S, Nayak SR, Nayak J, Pelusi D. Modified pixel level snake using bottom hat transformation for evolution of retinal vasculature map. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021; 18:5737-5757. [PMID: 34517510 DOI: 10.3934/mbe.2021290] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Small changes in retinal blood vessels may produce different pathological disorders which may further cause blindness. Therefore, accurate extraction of vasculature map of retinal fundus image has become a challenging task for analysis of different pathologies. The present study offers an unsupervised method for extraction of vasculature map from retinal fundus images. This paper presents the methodology for evolution of vessels using Modified Pixel Level Snake (MPLS) algorithm based on Black Top-Hat (BTH) transformation. In the proposed method, initially bimodal masking is used for extraction of the mask of the retinal fundus image. Then adaptive segmentation and global thresholding is applied on masked image to find the initial contour image. Finally, MPLS is used for evolution of contour in all four cardinal directions using external, internal and balloon potential. This proposed work is implemented using MATLAB software. DRIVE and STARE databases are used for checking the performance of the system. In the proposed work, various performance metrics such as sensitivity, specificity and accuracy are evaluated. The average sensitivity of 76.96%, average specificity of 98.34% and average accuracy of 96.30% is achieved for DRIVE database. This technique can also segment vessels of pathological images accurately; reaching the average sensitivity of 70.80%, average specificity of 96.40% and average accuracy of 94.41%. The present study provides a simple and accurate method for the detection of vasculature map for normal fundus images as well as pathological images. It can be helpful for the assessment of various retinal vascular attributes like length, diameter, width, tortuosity and branching angle.
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Affiliation(s)
- Meenu Garg
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Sheifali Gupta
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Soumya Ranjan Nayak
- Amity School of Engineering and Technology, Amity University Uttar Pradesh, Noida, India
| | - Janmenjoy Nayak
- Aditya Institute of Technology and Management, Tekkali, K. Kotturu, Andhra Pradesh, India
| | - Danilo Pelusi
- Faculty of Communication Sciences, University of Teramo, Italy
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Fu W, Breininger K, Schaffert R, Pan Z, Maier A. "Keep it simple, scholar": an experimental analysis of few-parameter segmentation networks for retinal vessels in fundus imaging. Int J Comput Assist Radiol Surg 2021; 16:967-978. [PMID: 33929676 PMCID: PMC8166700 DOI: 10.1007/s11548-021-02340-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 02/25/2021] [Indexed: 11/02/2022]
Abstract
PURPOSE With the recent development of deep learning technologies, various neural networks have been proposed for fundus retinal vessel segmentation. Among them, the U-Net is regarded as one of the most successful architectures. In this work, we start with simplification of the U-Net, and explore the performance of few-parameter networks on this task. METHODS We firstly modify the model with popular functional blocks and additional resolution levels, then we switch to exploring the limits for compression of the network architecture. Experiments are designed to simplify the network structure, decrease the number of trainable parameters, and reduce the amount of training data. Performance evaluation is carried out on four public databases, namely DRIVE, STARE, HRF and CHASE_DB1. In addition, the generalization ability of the few-parameter networks are compared against the state-of-the-art segmentation network. RESULTS We demonstrate that the additive variants do not significantly improve the segmentation performance. The performance of the models are not severely harmed unless they are harshly degenerated: one level, or one filter in the input convolutional layer, or trained with one image. We also demonstrate that few-parameter networks have strong generalization ability. CONCLUSION It is counter-intuitive that the U-Net produces reasonably good segmentation predictions until reaching the mentioned limits. Our work has two main contributions. On the one hand, the importance of different elements of the U-Net is evaluated, and the minimal U-Net which is capable of the task is presented. On the other hand, our work demonstrates that retinal vessel segmentation can be tackled by surprisingly simple configurations of U-Net reaching almost state-of-the-art performance. We also show that the simple configurations have better generalization ability than state-of-the-art models with high model complexity. These observations seem to be in contradiction to the current trend of continued increase in model complexity and capacity for the task under consideration.
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Affiliation(s)
- Weilin Fu
- Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- International Max Planck Research School for Physics of Light, Erlangen, Germany
| | - Katharina Breininger
- Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Roman Schaffert
- Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Zhaoya Pan
- Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
| | - Andreas Maier
- Pattern Recognition Lab, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
- Erlangen Graduate School in Advanced Optical Technologies, Erlangen, Germany
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Mookiah MRK, Hogg S, MacGillivray TJ, Prathiba V, Pradeepa R, Mohan V, Anjana RM, Doney AS, Palmer CNA, Trucco E. A review of machine learning methods for retinal blood vessel segmentation and artery/vein classification. Med Image Anal 2020; 68:101905. [PMID: 33385700 DOI: 10.1016/j.media.2020.101905] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 11/10/2020] [Accepted: 11/11/2020] [Indexed: 12/20/2022]
Abstract
The eye affords a unique opportunity to inspect a rich part of the human microvasculature non-invasively via retinal imaging. Retinal blood vessel segmentation and classification are prime steps for the diagnosis and risk assessment of microvascular and systemic diseases. A high volume of techniques based on deep learning have been published in recent years. In this context, we review 158 papers published between 2012 and 2020, focussing on methods based on machine and deep learning (DL) for automatic vessel segmentation and classification for fundus camera images. We divide the methods into various classes by task (segmentation or artery-vein classification), technique (supervised or unsupervised, deep and non-deep learning, hand-crafted methods) and more specific algorithms (e.g. multiscale, morphology). We discuss advantages and limitations, and include tables summarising results at-a-glance. Finally, we attempt to assess the quantitative merit of DL methods in terms of accuracy improvement compared to other methods. The results allow us to offer our views on the outlook for vessel segmentation and classification for fundus camera images.
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Affiliation(s)
| | - Stephen Hogg
- VAMPIRE project, Computing (SSEN), University of Dundee, Dundee DD1 4HN, UK
| | - Tom J MacGillivray
- VAMPIRE project, Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh EH16 4SB, UK
| | - Vijayaraghavan Prathiba
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Rajendra Pradeepa
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Viswanathan Mohan
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Ranjit Mohan Anjana
- Madras Diabetes Research Foundation and Dr. Mohan's Diabetes Specialities Centre, Gopalapuram, Chennai 600086, India
| | - Alexander S Doney
- Division of Population Health and Genomics, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK
| | - Colin N A Palmer
- Division of Population Health and Genomics, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK
| | - Emanuele Trucco
- VAMPIRE project, Computing (SSEN), University of Dundee, Dundee DD1 4HN, UK
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Retinal Blood Vessel Segmentation Using Hybrid Features and Multi-Layer Perceptron Neural Networks. Symmetry (Basel) 2020. [DOI: 10.3390/sym12060894] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Segmentation of retinal blood vessels is the first step for several computer aided-diagnosis systems (CAD), not only for ocular disease diagnosis such as diabetic retinopathy (DR) but also of non-ocular disease, such as hypertension, stroke and cardiovascular diseases. In this paper, a supervised learning-based method, using a multi-layer perceptron neural network and carefully selected vector of features, is proposed. In particular, for each pixel of a retinal fundus image, we construct a 24-D feature vector, encoding information on the local intensity, morphology transformation, principal moments of phase congruency, Hessian, and difference of Gaussian values. A post-processing technique depending on mathematical morphological operators is used to optimise the segmentation. Moreover, the selected feature vector succeeded in outfitting the symmetric features that provided the final blood vessel probability as a binary map image. The proposed method is tested on three known datasets: Digital Retinal Image for Extraction (DRIVE), Structure Analysis of the Retina (STARE), and CHASED_DB1 datasets. The experimental results, both visual and quantitative, testify to the robustness of the proposed method. This proposed method achieved 0.9607, 0.7542, and 0.9843 in DRIVE, 0.9632, 0.7806, and 0.9825 on STARE, 0.9577, 0.7585 and 0.9846 in CHASE_DB1, with respectable accuracy, sensitivity, and specificity performance metrics. Furthermore, they testify that the method is superior to seven similar state-of-the-art methods.
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Multiloss Function Based Deep Convolutional Neural Network for Segmentation of Retinal Vasculature into Arterioles and Venules. BIOMED RESEARCH INTERNATIONAL 2019; 2019:4747230. [PMID: 31111055 PMCID: PMC6487175 DOI: 10.1155/2019/4747230] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 02/20/2019] [Accepted: 03/20/2019] [Indexed: 02/02/2023]
Abstract
The arterioles and venules (AV) classification of retinal vasculature is considered as the first step in the development of an automated system for analysing the vasculature biomarker association with disease prognosis. Most of the existing AV classification methods depend on the accurate segmentation of retinal blood vessels. Moreover, the unavailability of large-scale annotated data is a major hindrance in the application of deep learning techniques for AV classification. This paper presents an encoder-decoder based fully convolutional neural network for classification of retinal vasculature into arterioles and venules, without requiring the preliminary step of vessel segmentation. An optimized multiloss function is used to learn the pixel-wise and segment-wise retinal vessel labels. The proposed method is trained and evaluated on DRIVE, AVRDB, and a newly created AV classification dataset; and it attains 96%, 98%, and 97% accuracy, respectively. The new AV classification dataset is comprised of 700 annotated retinal images, which will offer the researchers a benchmark to compare their AV classification results.
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13
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Vigneshwaran V, Sands GB, LeGrice IJ, Smaill BH, Smith NP. Reconstruction of coronary circulation networks: A review of methods. Microcirculation 2019; 26:e12542. [DOI: 10.1111/micc.12542] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 01/25/2019] [Accepted: 02/27/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Vibujithan Vigneshwaran
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
- Faculty of Engineering University of Auckland Auckland New Zealand
| | - Gregory B. Sands
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
| | - Ian J. LeGrice
- Department of Physiology University of Auckland Auckland New Zealand
| | - Bruce H. Smaill
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
| | - Nicolas P. Smith
- Auckland Bioengineering Institute University of Auckland Auckland New Zealand
- Faculty of Engineering University of Auckland Auckland New Zealand
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Dash J, Bhoi N. Retinal Blood Vessel Extraction From Fundus Images Using Improved Otsu Method. INTERNATIONAL JOURNAL OF E-HEALTH AND MEDICAL COMMUNICATIONS 2019. [DOI: 10.4018/ijehmc.2019040102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In the present time, the identification of blood vessels is a basic task for diagnosis of various eye abnormalities. So, this article offers an instinctive approach for identification of blood vessels in ophthalmoscope images. This approach includes three different phases: pre-processing, vessel extraction and post-processing for getting a final vessel segmentation outcome. In the presented method, formerly log transformation and contrast limited adaptive histogram equalization are used for the enhancement of retinal images. The enhanced image is then filtered using a morphological opening operation and subsequently the optic disk is removed. The second phase includes the application of the improved Otsu method on the pre-processed image for the identification of blood vessels. Lastly, the resultant vessel-segmented image is obtained by using the morphological cleaning operation. The proposed method is fast, time efficient, and gives consistent accuracy for all retinal images. It is more robust and easier to implement compared to other traditional methods. The performance of the presented method is evaluated using ten different mathematical measures. It achieves average sensitivity, specificity and accuracy of 0.710, 0.982 and 0.956 for the digital retinal images for vessel extraction (DRIVE) database, 0.738, 0.982 and 0.954 for the structure analysis of the retina (STARE) database and 0.737, 0.964 and 0.949 for the child heart and health study in England (CHASE_DB1) database. The presented method also performs better in segmenting thin vessels by giving average accuracies of 0.964, 0.954 and 0.965 for DRIVE, STARE and CHASE_DB1 databases respectively.
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Affiliation(s)
| | - Nilamani Bhoi
- Veer Surendra Sai University of Technology, Odisha, India
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Saha A, Grimm LJ, Ghate SV, Kim CE, Soo MS, Yoon SC, Mazurowski MA. Machine learning-based prediction of future breast cancer using algorithmically measured background parenchymal enhancement on high-risk screening MRI. J Magn Reson Imaging 2019; 50:456-464. [PMID: 30648316 DOI: 10.1002/jmri.26636] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 12/16/2018] [Accepted: 12/18/2018] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND Preliminary work has demonstrated that background parenchymal enhancement (BPE) assessed by radiologists is predictive of future breast cancer in women undergoing high-risk screening MRI. Algorithmically assessed measures of BPE offer a more precise and reproducible means of measuring BPE than human readers and thus might improve the predictive performance of future cancer development. PURPOSE To determine if algorithmically extracted imaging features of BPE on screening breast MRI in high-risk women are associated with subsequent development of cancer. STUDY TYPE Case-control study. POPULATION In all, 133 women at high risk for developing breast cancer; 46 of these patients developed breast cancer subsequently over a follow-up period of 2 years. FIELD STRENGTH/SEQUENCE 5 T or 3.0 T T1 -weighted precontrast fat-saturated and nonfat-saturated sequences and postcontrast nonfat-saturated sequences. ASSESSMENT Automatic features of BPE were extracted with a computer algorithm. Subjective BPE scores from five breast radiologists (blinded to clinical outcomes) were also available. STATISTICAL TESTS Leave-one-out crossvalidation for a multivariate logistic regression model developed using the automatic features and receiver operating characteristic (ROC) analysis were performed to calculate the area under the curve (AUC). Comparison of automatic features and subjective features was performed using a generalized regression model and the P-value was obtained. Odds ratios for automatic and subjective features were compared. RESULTS The multivariate model discriminated patients who developed cancer from the patients who did not, with an AUC of 0.70 (95% confidence interval: 0.60-0.79, P < 0.001). The imaging features remained independently predictive of subsequent development of cancer (P < 0.003) when compared with the subjective BPE assessment of the readers. DATA CONCLUSION Automatically extracted BPE measurements may potentially be used to further stratify risk in patients undergoing high-risk screening MRI. LEVEL OF EVIDENCE 3 Technical Efficacy: Stage 5 J. Magn. Reson. Imaging 2019;50:456-464.
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Affiliation(s)
- Ashirbani Saha
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Lars J Grimm
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Sujata V Ghate
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Connie E Kim
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Mary S Soo
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Sora C Yoon
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA
| | - Maciej A Mazurowski
- Department of Radiology, Duke University School of Medicine, Durham, North Carolina, USA.,Department of Electrical and Computer Eng., Duke University, Durham, North Carolina, USA.,Duke University Medical Physics Program, Durham, North Carolina, USA
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Alom MZ, Yakopcic C, Hasan M, Taha TM, Asari VK. Recurrent residual U-Net for medical image segmentation. J Med Imaging (Bellingham) 2019; 6:014006. [PMID: 30944843 PMCID: PMC6435980 DOI: 10.1117/1.jmi.6.1.014006] [Citation(s) in RCA: 199] [Impact Index Per Article: 39.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 03/05/2019] [Indexed: 12/12/2022] Open
Abstract
Deep learning (DL)-based semantic segmentation methods have been providing state-of-the-art performance in the past few years. More specifically, these techniques have been successfully applied in medical image classification, segmentation, and detection tasks. One DL technique, U-Net, has become one of the most popular for these applications. We propose a recurrent U-Net model and a recurrent residual U-Net model, which are named RU-Net and R2U-Net, respectively. The proposed models utilize the power of U-Net, residual networks, and recurrent convolutional neural networks. There are several advantages to using these proposed architectures for segmentation tasks. First, a residual unit helps when training deep architectures. Second, feature accumulation with recurrent residual convolutional layers ensures better feature representation for segmentation tasks. Third, it allows us to design better U-Net architectures with the same number of network parameters with better performance for medical image segmentation. The proposed models are tested on three benchmark datasets, such as blood vessel segmentation in retinal images, skin cancer segmentation, and lung lesion segmentation. The experimental results show superior performance on segmentation tasks compared to equivalent models, including a variant of a fully connected convolutional neural network called SegNet, U-Net, and residual U-Net.
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Affiliation(s)
- Md Zahangir Alom
- University of Dayton, Department of Electrical and Computer Engineering, Dayton, Ohio, United States
| | - Chris Yakopcic
- University of Dayton, Department of Electrical and Computer Engineering, Dayton, Ohio, United States
| | | | - Tarek M. Taha
- University of Dayton, Department of Electrical and Computer Engineering, Dayton, Ohio, United States
| | - Vijayan K. Asari
- University of Dayton, Department of Electrical and Computer Engineering, Dayton, Ohio, United States
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Khan KB, Khaliq AA, Jalil A, Iftikhar MA, Ullah N, Aziz MW, Ullah K, Shahid M. A review of retinal blood vessels extraction techniques: challenges, taxonomy, and future trends. Pattern Anal Appl 2018. [DOI: 10.1007/s10044-018-0754-8] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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18
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Moccia S, De Momi E, El Hadji S, Mattos LS. Blood vessel segmentation algorithms - Review of methods, datasets and evaluation metrics. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 158:71-91. [PMID: 29544791 DOI: 10.1016/j.cmpb.2018.02.001] [Citation(s) in RCA: 219] [Impact Index Per Article: 36.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Revised: 12/23/2017] [Accepted: 02/02/2018] [Indexed: 05/09/2023]
Abstract
BACKGROUND Blood vessel segmentation is a topic of high interest in medical image analysis since the analysis of vessels is crucial for diagnosis, treatment planning and execution, and evaluation of clinical outcomes in different fields, including laryngology, neurosurgery and ophthalmology. Automatic or semi-automatic vessel segmentation can support clinicians in performing these tasks. Different medical imaging techniques are currently used in clinical practice and an appropriate choice of the segmentation algorithm is mandatory to deal with the adopted imaging technique characteristics (e.g. resolution, noise and vessel contrast). OBJECTIVE This paper aims at reviewing the most recent and innovative blood vessel segmentation algorithms. Among the algorithms and approaches considered, we deeply investigated the most novel blood vessel segmentation including machine learning, deformable model, and tracking-based approaches. METHODS This paper analyzes more than 100 articles focused on blood vessel segmentation methods. For each analyzed approach, summary tables are presented reporting imaging technique used, anatomical region and performance measures employed. Benefits and disadvantages of each method are highlighted. DISCUSSION Despite the constant progress and efforts addressed in the field, several issues still need to be overcome. A relevant limitation consists in the segmentation of pathological vessels. Unfortunately, not consistent research effort has been addressed to this issue yet. Research is needed since some of the main assumptions made for healthy vessels (such as linearity and circular cross-section) do not hold in pathological tissues, which on the other hand require new vessel model formulations. Moreover, image intensity drops, noise and low contrast still represent an important obstacle for the achievement of a high-quality enhancement. This is particularly true for optical imaging, where the image quality is usually lower in terms of noise and contrast with respect to magnetic resonance and computer tomography angiography. CONCLUSION No single segmentation approach is suitable for all the different anatomical region or imaging modalities, thus the primary goal of this review was to provide an up to date source of information about the state of the art of the vessel segmentation algorithms so that the most suitable methods can be chosen according to the specific task.
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Affiliation(s)
- Sara Moccia
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy; Department of Advanced Robotics, Istituto Italiano di Tecnologia, Genoa, Italy.
| | - Elena De Momi
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy
| | - Sara El Hadji
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy.
| | - Leonardo S Mattos
- Department of Advanced Robotics, Istituto Italiano di Tecnologia, Genoa, Italy
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Abstract
Pathological disorders may happen due to small changes in retinal blood vessels which may later turn into blindness. Hence, the accurate segmentation of blood vessels is becoming a challenging task for pathological analysis. This paper offers an unsupervised recursive method for extraction of blood vessels from ophthalmoscope images. First, a vessel-enhanced image is generated with the help of gamma correction and contrast-limited adaptive histogram equalization (CLAHE). Next, the vessels are extracted iteratively by applying an adaptive thresholding technique. At last, a final vessel segmented image is produced by applying a morphological cleaning operation. Evaluations are accompanied on the publicly available digital retinal images for vessel extraction (DRIVE) and Child Heart And Health Study in England (CHASE_DB1) databases using nine different measurements. The proposed method achieves average accuracies of 0.957 and 0.952 on DRIVE and CHASE_DB1 databases respectively.
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20
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Zhou L, Yu Q, Xu X, Gu Y, Yang J. Improving dense conditional random field for retinal vessel segmentation by discriminative feature learning and thin-vessel enhancement. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2017; 148:13-25. [PMID: 28774435 DOI: 10.1016/j.cmpb.2017.06.016] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 05/28/2017] [Accepted: 06/23/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND AND OBJECTIVES As retinal vessels in color fundus images are thin and elongated structures, standard pairwise based random fields, which always suffer the "shrinking bias" problem, are not competent for such segmentation task. Recently, a dense conditional random field (CRF) model has been successfully used in retinal vessel segmentation. Its corresponding energy function is formulated as a linear combination of several unary features and a pairwise term. However, the hand-crafted unary features can be suboptimal in terms of linear models. Here we propose to learn discriminative unary features and enhance thin vessels for pairwise potentials to further improve the segmentation performance. METHODS Our proposed method comprises four main steps: firstly, image preprocessing is applied to eliminate the strong edges around the field of view (FOV) and normalize the luminosity and contrast inside FOV; secondly, a convolutional neural network (CNN) is properly trained to generate discriminative features for linear models; thirdly, a combo of filters are applied to enhance thin vessels, reducing the intensity difference between thin and wide vessels; fourthly, by taking the discriminative features for unary potentials and the thin-vessel enhanced image for pairwise potentials, we adopt the dense CRF model to achieve the final retinal vessel segmentation. The segmentation performance is evaluated on four public datasets (i.e. DRIVE, STARE, CHASEDB1 and HRF). RESULTS Experimental results show that our proposed method improves the performance of the dense CRF model and outperforms other methods when evaluated in terms of F1-score, Matthews correlation coefficient (MCC) and G-mean, three effective metrics for the evaluation of imbalanced binary classification. Specifically, the F1-score, MCC and G-mean are 0.7942, 0.7656, 0.8835 for the DRIVE dataset respectively; 0.8017, 0.7830, 0.8859 for STARE respectively; 0.7644, 0.7398, 0.8579 for CHASEDB1 respectively; and 0.7627, 0.7402, 0.8812 for HRF respectively. CONCLUSIONS The discriminative features learned in CNNs are more effective than hand-crafted ones. Our proposed method performs well in retinal vessel segmentation. The architecture of our method is trainable and can be integrated into computer-aided diagnostic (CAD) systems in the future.
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Affiliation(s)
- Lei Zhou
- Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, SEIEE Building 2-427, No. 800, Dongchuan Road, Minhang District, Shanghai, 200240 China.
| | - Qi Yu
- Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - Xun Xu
- Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - Yun Gu
- Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, SEIEE Building 2-427, No. 800, Dongchuan Road, Minhang District, Shanghai, 200240 China
| | - Jie Yang
- Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University, SEIEE Building 2-427, No. 800, Dongchuan Road, Minhang District, Shanghai, 200240 China.
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21
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Multiscale segmentation of exudates in retinal images using contextual cues and ensemble classification. Biomed Signal Process Control 2017. [DOI: 10.1016/j.bspc.2017.02.012] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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22
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L Srinidhi C, Aparna P, Rajan J. Recent Advancements in Retinal Vessel Segmentation. J Med Syst 2017; 41:70. [DOI: 10.1007/s10916-017-0719-2] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 03/01/2017] [Indexed: 11/28/2022]
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23
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Orlando JI, Prokofyeva E, Blaschko MB. A Discriminatively Trained Fully Connected Conditional Random Field Model for Blood Vessel Segmentation in Fundus Images. IEEE Trans Biomed Eng 2017; 64:16-27. [DOI: 10.1109/tbme.2016.2535311] [Citation(s) in RCA: 291] [Impact Index Per Article: 41.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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24
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Liskowski P, Krawiec K. Segmenting Retinal Blood Vessels With Deep Neural Networks. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:2369-2380. [PMID: 27046869 DOI: 10.1109/tmi.2016.2546227] [Citation(s) in RCA: 313] [Impact Index Per Article: 39.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The condition of the vascular network of human eye is an important diagnostic factor in ophthalmology. Its segmentation in fundus imaging is a nontrivial task due to variable size of vessels, relatively low contrast, and potential presence of pathologies like microaneurysms and hemorrhages. Many algorithms, both unsupervised and supervised, have been proposed for this purpose in the past. We propose a supervised segmentation technique that uses a deep neural network trained on a large (up to 400[Formula: see text]000) sample of examples preprocessed with global contrast normalization, zero-phase whitening, and augmented using geometric transformations and gamma corrections. Several variants of the method are considered, including structured prediction, where a network classifies multiple pixels simultaneously. When applied to standard benchmarks of fundus imaging, the DRIVE, STARE, and CHASE databases, the networks significantly outperform the previous algorithms on the area under ROC curve measure (up to > 0.99) and accuracy of classification (up to > 0.97 ). The method is also resistant to the phenomenon of central vessel reflex, sensitive in detection of fine vessels ( sensitivity > 0.87 ), and fares well on pathological cases.
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25
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Abdullah M, Fraz MM, Barman SA. Localization and segmentation of optic disc in retinal images using circular Hough transform and grow-cut algorithm. PeerJ 2016; 4:e2003. [PMID: 27190713 PMCID: PMC4867714 DOI: 10.7717/peerj.2003] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2016] [Accepted: 04/12/2016] [Indexed: 11/20/2022] Open
Abstract
Automated retinal image analysis has been emerging as an important diagnostic tool for early detection of eye-related diseases such as glaucoma and diabetic retinopathy. In this paper, we have presented a robust methodology for optic disc detection and boundary segmentation, which can be seen as the preliminary step in the development of a computer-assisted diagnostic system for glaucoma in retinal images. The proposed method is based on morphological operations, the circular Hough transform and the grow-cut algorithm. The morphological operators are used to enhance the optic disc and remove the retinal vasculature and other pathologies. The optic disc center is approximated using the circular Hough transform, and the grow-cut algorithm is employed to precisely segment the optic disc boundary. The method is quantitatively evaluated on five publicly available retinal image databases DRIVE, DIARETDB1, CHASE_DB1, DRIONS-DB, Messidor and one local Shifa Hospital Database. The method achieves an optic disc detection success rate of 100% for these databases with the exception of 99.09% and 99.25% for the DRIONS-DB, Messidor, and ONHSD databases, respectively. The optic disc boundary detection achieved an average spatial overlap of 78.6%, 85.12%, 83.23%, 85.1%, 87.93%, 80.1%, and 86.1%, respectively, for these databases. This unique method has shown significant improvement over existing methods in terms of detection and boundary extraction of the optic disc.
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Affiliation(s)
- Muhammad Abdullah
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology , Islamabad , Pakistan
| | - Muhammad Moazam Fraz
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology , Islamabad , Pakistan
| | - Sarah A Barman
- Faculty of Science Engineering and Computing, Kingston University , London , United Kingdom
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Comparative study of retinal vessel segmentation based on global thresholding techniques. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2015; 2015:895267. [PMID: 25793012 PMCID: PMC4352460 DOI: 10.1155/2015/895267] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Accepted: 11/13/2014] [Indexed: 11/17/2022]
Abstract
Due to noise from uneven contrast and illumination during acquisition process of retinal fundus images, the use of efficient preprocessing techniques is highly desirable to produce good retinal vessel segmentation results. This paper develops and compares the performance of different vessel segmentation techniques based on global thresholding using phase congruency and contrast limited adaptive histogram equalization (CLAHE) for the preprocessing of the retinal images. The results obtained show that the combination of preprocessing technique, global thresholding, and postprocessing techniques must be carefully chosen to achieve a good segmentation performance.
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27
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Mapayi T, Tapamo JR, Viriri S. Retinal Vessel Segmentation: A Comparative Study of Fuzzy C-Means and Sum Entropy Information on Phase Congruency. INT J ADV ROBOT SYST 2015. [DOI: 10.5772/60581] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Abstract
As the use of robotic-assisted surgery systems continue to increase, highly accurate and timely efficient automatic vasculature detection techniques for large and thin vessels in the retinal images are needed. Vascular segmentation has however been challenging due to uneven illumination in retinal images. The use of efficient pre-processing techniques as well as good segmentation techniques are highly needed to produce good vessel segmentation results. This paper presents an investigatory study on the combination of phase congruence with fuzzy c-means and the combination of phase congruence with gray level co-occurrence (GLCM) matrix sum entropy for the segmentation of retinal vessels. Fuzzy C-Means combined with phase congruence yields a higher accuracy rate but a longer running time while compared to GLCM sum entropy combined with phase congruence. While compared with the widely previously used techniques on DRIVE and STARE databases, the techniques investigated yield high average accuracy rates.
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Affiliation(s)
- Temitope Mapayi
- University of Kwazulu-Natal, Durban, KwaZulu-Natal, South Africa
| | | | - Serestina Viriri
- University of Kwazulu-Natal, Durban, KwaZulu-Natal, South Africa
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