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He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, Yurkov A, McKenzie EHC, Raspé O, Kakishima M, Sánchez-Ramírez S, Vellinga EC, Halling R, Papp V, Zmitrovich IV, Buyck B, Ertz D, Wijayawardene NN, Cui BK, Schoutteten N, Liu XZ, Li TH, Yao YJ, Zhu XY, Liu AQ, Li GJ, Zhang MZ, Ling ZL, Cao B, Antonín V, Boekhout T, da Silva BDB, De Crop E, Decock C, Dima B, Dutta AK, Fell JW, Geml J, Ghobad-Nejhad M, Giachini AJ, Gibertoni TB, Gorjón SP, Haelewaters D, He SH, Hodkinson BP, Horak E, Hoshino T, Justo A, Lim YW, Menolli N, Mešić A, Moncalvo JM, Mueller GM, Nagy LG, Nilsson RH, Noordeloos M, Nuytinck J, Orihara T, Ratchadawan C, Rajchenberg M, Silva-Filho AGS, Sulzbacher MA, Tkalčec Z, Valenzuela R, Verbeken A, Vizzini A, Wartchow F, Wei TZ, Weiß M, Zhao CL, Kirk PM. Notes, outline and divergence times of Basidiomycota. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00435-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractThe Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
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Truong C, Mujic AB, Healy R, Kuhar F, Furci G, Torres D, Niskanen T, Sandoval-Leiva PA, Fernández N, Escobar JM, Moretto A, Palfner G, Pfister D, Nouhra E, Swenie R, Sánchez-García M, Matheny PB, Smith ME. How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity. THE NEW PHYTOLOGIST 2017; 214:913-919. [PMID: 28272801 DOI: 10.1111/nph.14509] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Affiliation(s)
- Camille Truong
- Department of Plant Pathology, University of Florida, PO Box 110680, Gainesville, FL, 32611, USA
| | - Alija B Mujic
- Department of Plant Pathology, University of Florida, PO Box 110680, Gainesville, FL, 32611, USA
| | - Rosanne Healy
- Department of Plant Pathology, University of Florida, PO Box 110680, Gainesville, FL, 32611, USA
| | - Francisco Kuhar
- Centro de Investigación y Extensión Forestal Andino Patagónico (CONICET), Ruta 259, Km 4, Esquel, 9200, Chubut, Argentina
| | - Giuliana Furci
- Fundación Fungi, José Zapiola 8240 E, La Reina, Santiago, Chile
| | - Daniela Torres
- Fundación Fungi, José Zapiola 8240 E, La Reina, Santiago, Chile
| | - Tuula Niskanen
- The Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey, TW9 3AB, UK
| | | | - Natalia Fernández
- Laboratorio de Microbiología Aplicada y Biotecnología (CONICET), Universidad Nacional del Comahue, IPATEC, Quintral 1250, San Carlos de Bariloche, 8400, Río Negro, Argentina
| | - Julio M Escobar
- Centro Austral de Investigaciones Científicas (CONICET), Bernardo Houssay 200, Ushuaia, 9410, Tierra del Fuego, Argentina
| | - Alicia Moretto
- Centro Austral de Investigaciones Científicas (CONICET), Bernardo Houssay 200, Ushuaia, 9410, Tierra del Fuego, Argentina
- Universidad Nacional de Tierra del Fuego, Onas 450, Ushuaia, 9410, Tierra del Fuego, Argentina
| | - Götz Palfner
- Departamento de Botánica, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Donald Pfister
- Farlow Herbarium of Cryptogamic Botany and Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA, 02138, USA
| | - Eduardo Nouhra
- Instituto Multidisciplinario de Biología Vegetal (CONICET), FCEFyN, Universidad Nacional de Córdoba, Casilla de correo 495, Córdoba, 5000, Argentina
| | - Rachel Swenie
- Department of Ecology and Evolutionary Biology, University of Tennessee, 334 Hesler Biology Building, Knoxville, TN, 37996, USA
| | - Marisol Sánchez-García
- Department of Ecology and Evolutionary Biology, University of Tennessee, 334 Hesler Biology Building, Knoxville, TN, 37996, USA
| | - P Brandon Matheny
- Department of Ecology and Evolutionary Biology, University of Tennessee, 334 Hesler Biology Building, Knoxville, TN, 37996, USA
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, PO Box 110680, Gainesville, FL, 32611, USA
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