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de Pontes JS, Oehl F, Pereira CD, de Toledo Machado CT, Coyne D, da Silva DKA, Maia LC. Heterogeneity in Arbuscular Mycorrhizal Fungi and Plant Communities of the Brazilian Cerrado, Transitional Areas toward the Caatinga, and the Atlantic Forest. MICROBIAL ECOLOGY 2024; 87:29. [PMID: 38191681 DOI: 10.1007/s00248-023-02337-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 12/22/2023] [Indexed: 01/10/2024]
Abstract
The Cerrado is the most diverse tropical savanna worldwide and the second-largest biome in South America. The objective of this study was to understand the heterogeneity and dynamics of arbuscular mycorrhizal fungi (AMF) in different types of natural Cerrado vegetation and areas that are transitioning to dryer savannas or tropical rainforests and to elucidate the driving factors responsible for the differences between these ecosystems. Twenty-one natural sites were investigated, including typical Cerrado forest, typical Caatinga, Atlantic Rainforest, transitions between Cerrado and Caatinga, Cerrado areas near Caatinga or rainforest, and Carrasco sites. Spores were extracted from the soils, counted, and morphologically analyzed. In total, 82 AMF species were detected. AMF species richness varied between 36 and 51, with the highest richness found in the area transitioning between Cerrado and Caatinga, followed by areas of Cerrado close to Caatinga and typical Cerrado forest. The types of Cerrado vegetation and the areas transitioning to the Caatinga shared the highest numbers of AMF species (32-38). Vegetation, along with chemical and physical soil parameters, affected the AMF communities, which may also result from seasonal rainfall patterns. The Cerrado has a great AMF diversity and is, consequently, a natural refuge for AMF. The plant and microbial communities as well as the diversity of habitats require urgent protection within the Cerrado, as it represents a key AMF hotspot.
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Affiliation(s)
- Juliana Souza de Pontes
- Programa de Pós-Graduação em Ciências Biológicas, Centro de Biociências, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Recife, PE, 50740-600, Brazil
| | - Fritz Oehl
- Departamento de Micologia, Centro de Biociências, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Recife, PE, 50740-600, Brazil
- Agroscope, Competence Division of Plants and Plant Products, Plant Protection Products-Impact and Assessment, Müller-Thurgau-Strasse 29, CH-8820, Wädenswil, Switzerland
| | | | | | - Danny Coyne
- International Institute of Tropical Agriculture (IITA), Oyo Road, Ibadan, Nigeria
| | - Danielle Karla Alves da Silva
- Departamento de Micologia, Centro de Biociências, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Recife, PE, 50740-600, Brazil.
| | - Leonor Costa Maia
- Departamento de Micologia, Centro de Biociências, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Recife, PE, 50740-600, Brazil
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Corazon-Guivin MA, Romero-Cachique G, Del Aguila KM, Padilla-Domínguez A, Hernández-Amasifuen AD, Cerna-Mendoza A, Coyne D, Oehl F. Rhizoglomus variabile and Nanoglomus plukenetiae, Native to Peru, Promote Coffee Growth in Western Amazonia. Microorganisms 2023; 11:2883. [PMID: 38138027 PMCID: PMC10745942 DOI: 10.3390/microorganisms11122883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 11/20/2023] [Accepted: 11/27/2023] [Indexed: 12/24/2023] Open
Abstract
Coffee (Coffea arabica) is among the world's most economically important crops. Coffee was shown to be highly dependent on arbuscular mycorrhizal fungi (AMF) in traditionally managed coffee plantations in the tropics. The objective of this study was to assess AMF species richness in coffee plantations of four provinces in Perú, to isolate AMF isolates native to these provinces, and to test the effects of selected indigenous AMF strains on coffee growth. AMF species were identified by morphological tools on the genus level, and if possible further to the species level. Two native species, Rhizoglomus variabile and Nanoglomus plukenetiae, recently described from the Peruvian mountain ranges, were successfully cultured in the greenhouse on host plants. In two independent experiments, both species were assessed for their ability to colonize coffee seedlings and improve coffee growth over 135 days. A total of 35 AMF morphospecies were identified from 12 plantations. The two inoculated species effectively colonized coffee roots, which resulted in 3.0-8.6 times higher shoot, root and total biomass, when compared to the non-mycorrhizal controls. R. variabile was superior to N. plukenetiae in all measured parameters, increasing shoot, root, and total biomass dry weight by 4.7, 8.6 and 5.5 times, respectively. The dual inoculation of both species, however, did not further improve plant growth, when compared to single-species inoculations. The colonization of coffee by either R. variabile or N. plukenetiae strongly enhances coffee plant growth. R. variabile, in particular, offers enormous potential for improving coffee establishment and productivity. Assessment of further AMF species, including species from other AMF families should be considered for optimization of coffee growth promotion, both alone and in combination with R. variabile.
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Affiliation(s)
- Mike Anderson Corazon-Guivin
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Gabriel Romero-Cachique
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Karen M. Del Aguila
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Amner Padilla-Domínguez
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Angel David Hernández-Amasifuen
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Agustin Cerna-Mendoza
- Laboratorio de Biología y Genética Molecular, Universidad Nacional de San Martín, Jr. Amorarca N° 315, Morales 22201, Peru; (G.R.-C.); (K.M.D.A.); (A.P.-D.); (A.D.H.-A.); (A.C.-M.)
| | - Danny Coyne
- International Institute of Tropical Agriculture (IITA), Headquarters PMB 5320, Oyo Road, Ibadan 200001, Oyo State, Nigeria;
| | - Fritz Oehl
- Agroscope, Competence Division for Plants and Plant Products, Plant Protection Products—Impact and Assessment, Applied Ecotoxicology, Müller-Thurgau-Strasse 29, 8820 Wädenswil, Switzerland
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Beta Diversity of Arbuscular Mycorrhizal Communities Increases in Time after Crop Establishment of Peruvian Sacha Inchi ( Plukenetia volubilis). J Fungi (Basel) 2023; 9:jof9020194. [PMID: 36836309 PMCID: PMC9966307 DOI: 10.3390/jof9020194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 01/22/2023] [Accepted: 01/31/2023] [Indexed: 02/05/2023] Open
Abstract
(1) Background: Beta diversity, i.e., the variance in species compositions across communities, has been pointed out as a main factor for explaining ecosystem functioning. However, few studies have directly tested the effect of crop establishment on beta diversity. We studied beta diversity patterns of arbuscular mycorrhizal (AM) fungal communities associated to sacha inchi (Plukenetia volubilis) after crop establishment. (2) Methods: We molecularly characterized the AM fungal communities associated to roots of sacha inchi in plots after different times of crop establishment, from less than one year to older than three. We analyzed the patterns of alpha, beta, and phylogenetic diversity, and the sources of variation of AM fungal community composition. (3) Results: Beta diversity increased in the older plots, but no temporal effect in alpha or phylogenetic diversity was found. The AM fungal community composition was driven by environmental factors (altitude and soil conditions). A part of this variation could be attributed to differences between sampled locations (expressed as geographic coordinates). Crop age, in turn, affected the composition with no interactions with the environmental conditions or spatial location. (4) Conclusions: These results point out towards a certain recovery of the soil microbiota after sacha inchi establishment. This fact could be attributed to the low-impact management associated to this tropical crop.
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Błaszkowski J, Niezgoda P, Zubek S, Meller E, Milczarski P, Malinowski R, Malicka M, Uszok S, Goto BT, Bierza W, Casieri L, Magurno F. Three new species of arbuscular mycorrhizal fungi of the genus Diversispora from maritime dunes of Poland. Mycologia 2022; 114:453-466. [PMID: 35358026 DOI: 10.1080/00275514.2022.2030081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Three new species of arbuscular mycorrhizal fungi of the genus Diversispora (phylum Glomeromycota) were described based on their morphology and molecular phylogeny. The phylogeny was inferred from the analyses of the partial 45S rDNA sequences (18S-ITS-28S) and the largest subunit of RNA polymerase II (rpb1) gene. These species were associated in the field with plants colonizing maritime sand dunes of the Baltic Sea in Poland and formed mycorrhiza in single-species cultures.
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Affiliation(s)
- Janusz Błaszkowski
- Department of Protection and Shaping of Environment, West Pomeranian University of Technology in Szczecin, 71-434, Szczecin, Poland
| | - Piotr Niezgoda
- Department of Protection and Shaping of Environment, West Pomeranian University of Technology in Szczecin, 71-434, Szczecin, Poland
| | - Szymon Zubek
- Institute of Botany, Faculty of Biology, Jagiellonian University, 30-387, Kraków, Poland
| | - Edward Meller
- Laboratory of Soil Science and Environmental Chemistry, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, 71-434, Szczecin, Poland
| | - Paweł Milczarski
- Department of Genetics, Plant Breeding & Biotechnology, West Pomeranian University of Technology in Szczecin, 71-434, Szczecin, Poland
| | - Ryszard Malinowski
- Laboratory of Soil Science and Environmental Chemistry, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, 71-434, Szczecin, Poland
| | - Monika Malicka
- Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, 40-032, Katowice, Poland
| | - Sylwia Uszok
- Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, 40-032, Katowice, Poland
| | - Bruno Tomio Goto
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Campus Universitário, 59072-970, Natal, Brazil
| | - Wojciech Bierza
- Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, 40-032, Katowice, Poland
| | - Leonardo Casieri
- Mycorrhizal Applications LLC at Bio-Research & Development Growth Park, St. Louis, Missouri 63132, USA
| | - Franco Magurno
- Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, 40-032, Katowice, Poland
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Säle V, Palenzuela J, Azcón-Aguilar C, Sánchez-Castro I, da Silva GA, Seitz B, Sieverding E, van der Heijden MGA, Oehl F. Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. MYCORRHIZA 2021; 31:559-576. [PMID: 34327560 PMCID: PMC8484173 DOI: 10.1007/s00572-021-01042-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 07/08/2021] [Indexed: 05/17/2023]
Abstract
Almost all land plants form symbiotic associations with arbuscular mycorrhizal fungi (AMF). Individual plants usually are colonized by a wide range of phylogenetically diverse AMF species. The impact that different AMF taxa have on plant growth is only partly understood. We screened 44 AMF isolates for their effect on growth promotion and nutrient uptake of leek plants (Allium porrum), including isolates that have not been tested previously. In particular, we aimed to test weather AMF lineages with an ancient evolutionary age differ from relatively recent lineages in their effects on leek plants. The AMF isolates that were tested covered 18 species from all five AMF orders, eight families, and 13 genera. The experiment was conducted in a greenhouse. A soil-sand mixture was used as substrate for the leek plants. Plant growth response to inoculation with AMF varied from - 19 to 232% and depended on isolate, species, and family identity. Species from the ancient families Archaeosporaceae and Paraglomeraceae tended to be less beneficial, in terms of stimulation plant growth and nutrient uptake, than species of Glomeraceae, Entrophosporaceae, and Diversisporaceae, which are considered phylogenetically more recent than those ancient families. Root colonization levels also depended on AMF family. This study indicates that plant benefit in the symbiosis between plants and AMF is linked to fungal identity and phylogeny and it shows that there are large differences in effectiveness of different AMF.
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Affiliation(s)
- Verena Säle
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland.
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland.
- Vegetable-Production Extension, Agroscope, Müller-Thurgau-Strasse 29, CH-8820, Wädenswil, Switzerland.
| | - Javier Palenzuela
- Departamento de Microbiología del Suelo Y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Concepción Azcón-Aguilar
- Departamento de Microbiología del Suelo Y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Iván Sánchez-Castro
- Departamento de Microbiología, Universidad de Granada, Campus Universitario de Fuentenueva, 18071, Granada, Spain
| | - Gladstone Alves da Silva
- Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Cidade Universitária, Recife, PE, 50740-600, Brazil
| | - Benjamin Seitz
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland
| | - Ewald Sieverding
- Institute of Agricultural Sciences in the Tropics (Hans-Ruthenberg Institute), University of Hohenheim, Garbenstr. 13, 70599, Stuttgart-Hohenheim, Germany
| | - Marcel G A van der Heijden
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland
- Department of Plant and Microbial Biology, University of Zürich, 8057, Zürich, Switzerland
| | - Fritz Oehl
- Ecotoxicology, Agroscope, Müller-Thurgau-Strasse 29, CH-8820, Wädenswil, Switzerland
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Błaszkowski J, Jobim K, Niezgoda P, Meller E, Malinowski R, Milczarski P, Zubek S, Magurno F, Casieri L, Bierza W, Błaszkowski T, Crossay T, Goto BT. New Glomeromycotan Taxa, Dominikia glomerocarpica sp. nov. and Epigeocarpum crypticum gen. nov. et sp. nov. From Brazil, and Silvaspora gen. nov. From New Caledonia. Front Microbiol 2021; 12:655910. [PMID: 33967994 PMCID: PMC8102679 DOI: 10.3389/fmicb.2021.655910] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 03/09/2021] [Indexed: 11/25/2022] Open
Abstract
Examination of fungal specimens collected in the Atlantic rain forest ecosystems of Northeast Brazil revealed many potentially new epigeous and semihypogeous glomerocarp-producing species of the phylum Glomeromycota. Among them were two fungi that formed unorganized epigeous glomerocarps with glomoid spores of almost identical morphology. The sole structure that distinguished the two fungi was the laminate layer 2 of their three-layered spore wall, which in spores of the second fungus crushed in PVLG-based mountants contracted and, consequently, transferred into a crown-like structure. Surprisingly, phylogenetic analyses of sequences of the 18S-ITS-28S nuc rDNA and the rpb1 gene indicated that these glomerocarps represent two strongly divergent undescribed species in the family Glomeraceae. The analyses placed the first in the genus Dominikia, and the second in a sister clade to the monospecific generic clade Kamienskia with Kamienskia bistrata. The first species was described here as Dominikia glomerocarpica sp. nov. Because D. glomerocarpica is the first glomerocarp-forming species in Dominikia, the generic description of this genus was emended. The very large phylogenetic distance and the fundamental morphological differences between the second species and K. bistrata suggested us to introduce a new genus, here named as Epigeocarpum gen. nov., and name the new species Epigeocarpum crypticum sp. nov. In addition, our analyses also focused on an arbuscular mycorrhizal fungus originally described as Rhizophagus neocaledonicus, later transferred to the genus Rhizoglomus. The analyses indicated that this species does not belong to any of these two genera but represents a new clade at the rank of genus in the Glomeraceae, here described as Silvaspora gen. nov.
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Affiliation(s)
- Janusz Błaszkowski
- Laboratory of Plant Protection, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, Szczecin, Poland
| | - Khadija Jobim
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - Piotr Niezgoda
- Laboratory of Plant Protection, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, Szczecin, Poland
| | - Edward Meller
- Laboratory of Soil Science and Environmental Chemistry, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, Szczecin, Poland
| | - Ryszard Malinowski
- Laboratory of Soil Science and Environmental Chemistry, Department of Shaping of Environment, West Pomeranian University of Technology in Szczecin, Szczecin, Poland
| | - Paweł Milczarski
- Department of Genetics, Plant Breeding and Biotechnology, West Pomeranian University of Technology in Szczecin, Szczecin, Poland
| | - Szymon Zubek
- Faculty of Biology, Institute of Botany, Jagiellonian University, Kraków, Poland
| | - Franco Magurno
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Leonardo Casieri
- Mycorrhizal Applications LLC at Bio-Research & Development Growth Park, St. Louis, MO, United States
| | - Wojciech Bierza
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Tomasz Błaszkowski
- Department of General and Oncological Surgery, Pomeranian Medical University in Szczecin, Szczecin, Poland
| | - Thomas Crossay
- Institut des Sciences Exactes et Appliquées (EA 7484), Université de la Nouvelle Calédonie, Nouméa, New Caledonia
| | - Bruno Tomio Goto
- Departamento de Botânica e Zoologia, Universidade Federal do Rio Grande do Norte, Natal, Brazil
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Dominikia bonfanteae and Glomus atlanticum, two new species in the Glomeraceae (phylum Glomeromycota) with molecular phylogenies reconstructed from two unlinked loci. Mycol Prog 2021. [DOI: 10.1007/s11557-020-01659-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy. Appl Environ Microbiol 2020; 86:AEM.00880-20. [PMID: 32709729 PMCID: PMC7499029 DOI: 10.1128/aem.00880-20] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 07/20/2020] [Indexed: 01/08/2023] Open
Abstract
Learning more about the biodiversity and composition of arbuscular mycorrhizal fungi (AMF) under alternative agricultural management scenarios may be important to the sustainable intensification of switchgrass grown as a bioenergy crop. Using PacBio single-molecule sequencing and taxonomic resolution to the level of amplicon sequence variant (ASV), we assessed the effects of nitrogen amendment on AMF associating with switchgrass and explored relationships between AMF and switchgrass yield across three sites of various productivities in Wisconsin. Nitrogen amendment had little effect on AMF diversity metrics or community composition. While AMF ASV diversity was not correlated with switchgrass yield, AMF family richness and switchgrass yield had a strong, positive relationship at one of our three sites. Each of our sites was dominated by unique ASVs of the species Paraglomus brasilianum, indicating regional segregation of AMF at the intraspecific level. Our molecular biodiversity survey identified putative core members of the switchgrass microbiome, as well as novel clades of AMF, especially in the order Paraglomerales and the genus Nanoglomus Furthermore, our phylogenies unite the cosmopolitan, soil-inhabiting clade deemed GS24 with Pervetustaceae, an enigmatic family prevalent in stressful environments. Future studies should isolate and characterize the novel genetic diversity found in switchgrass agroecosystems and explore the potential yield benefits of AMF richness.IMPORTANCE We assessed the different species of beneficial fungi living in agricultural fields of switchgrass, a large grass grown for biofuels, using high-resolution DNA sequencing. Contrary to our expectations, the fungi were not greatly affected by fertilization. However, we found a positive relationship between plant productivity and the number of families of beneficial fungi at one site. Furthermore, we sequenced many species that could not be identified with existing reference databases. One group of fungi was highlighted in an earlier study for being widely distributed but of unknown taxonomy. We discovered that this group belonged to a family called Pervetustaceae, which may benefit switchgrass in stressful environments. To produce higher-yielding switchgrass in a more sustainable manner, it could help to study these undescribed fungi and the ways in which they may contribute to greater switchgrass yield in the absence of fertilization.
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