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Xu Q, Wang K, Shan Y, Wu H, Chen M, Wang N. Dynamical effects of memristive electromagnetic induction on a 2D Wilson neuron model. Cogn Neurodyn 2024; 18:645-657. [PMID: 38699611 PMCID: PMC11061083 DOI: 10.1007/s11571-023-10014-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 09/04/2023] [Accepted: 09/16/2023] [Indexed: 05/05/2024] Open
Abstract
Electromagnetic induction plays a crucial impact on the firing activity of biological neurons, since it exists along with the mutual effect between membrane potential and ions transport. Flux-controlled memristor is an available candidate in characterizing the electromagnetic induction effect. Different from the previously reported literature, a non-ideal flux-controlled memristor with cosine mem-conductance function is employed to determine the periodic magnetization and leakage flux processes in neurons. Thereafter, a three-dimensional (3D) memristive Wilson (m-Wilson) neuron model is constructed under the consideration of this kind of electromagnetic induction. Numerical simulations are performed by multiple numerical tools, which demonstrate that the 3D m-Wilson neuron model can generate abundant firing activities. Interestingly, coexisting firing activities, antimonotonicity, and firing frequency regulation are discovered under special parameter settings. Furthermore, a PCB-based analog circuit is designed and hardware measurements are executed to verify the numerical simulations. These explorations in numerical and hardware surveys might provide insights to regulate the firing activities by appropriate electromagnetic induction.
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Affiliation(s)
- Quan Xu
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
| | - Kai Wang
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
| | - Yufan Shan
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
| | - Huagan Wu
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
| | - Mo Chen
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
| | - Ning Wang
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213159 People’s Republic of China
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Chen D, Li J, Yuan C, He J, Zhu W. Learning-based sliding mode synchronization for fractional-order Hindmarsh-Rose neuronal models with deterministic learning. Front Neurosci 2023; 17:1246778. [PMID: 37829719 PMCID: PMC10564988 DOI: 10.3389/fnins.2023.1246778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 09/07/2023] [Indexed: 10/14/2023] Open
Abstract
Introduction In recent years, extensive research has been conducted on the synchronous behavior of neural networks. It is found that the synchronization ability of neurons is related to the performance of signal reception and transmission between neurons, which in turn affects the function of the organism. However, most of the existing synchronization methods are faced with two difficulties, one is the structural parameter dependency, which limits the promotion and application of synchronous methods in practical problems. The other is the limited adaptability, that is, even when faced with the same control tasks, for most of the existing control methods, the control parameters still need to be retrained. To this end, the present study investigates the synchronization problem of the fractional-order HindmarshRose (FOHR) neuronal models in unknown dynamic environment. Methods Inspired by the human experience of knowledge acquiring, memorizing, and application, a learning-based sliding mode control algorithm is proposed by using the deterministic learning (DL) mechanism. Firstly, the unknown dynamics of the FOHR system under unknown dynamic environment is locally accurately identified and stored in the form of constant weight neural networks through deterministic learning without dependency of the system parameters. Then, based on the identified and stored system dynamics, the model-based and relearning-based sliding mode controller are designed for similar as well as new synchronization tasks, respectively. Results The synchronization process can be started quickly by recalling the empirical dynamics of neurons. Therefore, fast synchronization effect is achieved by reducing the online computing time. In addition, because of the convergence of the identification and synchronization process, the control experience can be constantly replenished and stored for reutilization, so as to improve the synchronization speed and accuracy continuously. Discussion The thought of this article will also bring inspiration to the related research in other fields.
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Affiliation(s)
- Danfeng Chen
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Junsheng Li
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Chengzhi Yuan
- Department of Mechanical, Industrial and Systems Engineering, University of Rhode Island, Kingston, RI, United States
| | - Jun He
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
| | - Wenbo Zhu
- School of Mechatronic Engineering and Automation, Foshan University, Foshan, China
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3
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Folke Olsen L. Complex dynamics in an unexplored simple model of the peroxidase-oxidase reaction. CHAOS (WOODBURY, N.Y.) 2023; 33:023102. [PMID: 36859227 DOI: 10.1063/5.0129095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Accepted: 01/09/2023] [Indexed: 06/18/2023]
Abstract
A previously overlooked version of the so-called Olsen model of the peroxidase-oxidase reaction has been studied numerically using 2D isospike stability and maximum Lyapunov exponent diagrams and reveals a rich variety of dynamic behaviors not observed before. The model has a complex bifurcation structure involving mixed-mode and bursting oscillations as well as quasiperiodic and chaotic dynamics. In addition, multiple periodic and non-periodic attractors coexist for the same parameters. For some parameter values, the model also reveals formation of mosaic patterns of complex dynamic states. The complex dynamic behaviors exhibited by this model are compared to those of another version of the same model, which has been studied in more detail. The two models show similarities, but also notable differences between them, e.g., the organization of mixed-mode oscillations in parameter space and the relative abundance of quasiperiodic and chaotic oscillations. In both models, domains with chaotic dynamics contain apparently disorganized subdomains of periodic attractors with dinoflagellate-like structures, while the domains with mainly quasiperiodic behavior contain subdomains with periodic attractors organized as regular filamentous structures. These periodic attractors seem to be organized according to Stern-Brocot arithmetics. Finally, it appears that toroidal (quasiperiodic) attractors develop into first wrinkled and then fractal tori before they break down to chaotic attractors.
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Affiliation(s)
- Lars Folke Olsen
- PhyLife, Institute of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
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4
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Yu D, Zhou X, Wang G, Ding Q, Li T, Jia Y. Effects of chaotic activity and time delay on signal transmission in FitzHugh-Nagumo neuronal system. Cogn Neurodyn 2022; 16:887-897. [PMID: 35847534 PMCID: PMC9279542 DOI: 10.1007/s11571-021-09743-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 10/12/2021] [Accepted: 10/25/2021] [Indexed: 12/16/2022] Open
Abstract
The influences of chaotic activity and time delay on the transmission of the sub-threshold signal (STS) in a single FitzHugh-Nagumo neuron and coupled neuronal networks are studied. It is found that a moderate chaotic activity level can enhance the system's detection and transmission of STS. This phenomenon is known as chaotic resonance (CR). In a single neuron, the large amplitude and small period of the STS have a positive effect on the CR phenomenon. In the coupled neuronal network, however, the signal transmission performance of chemical synapses is better than that of electrical synapses. The time delay can determine the trend of the system response, and the multiple chaotic resonances phenomenon is observed upon fine-tuning the time delay length. Both sub-harmonic chaotic resonance and chaotic anti-resonance appear when the STS period and time delay are locked. In chained networks, the signal transmission performance between electrical synapses attenuates continuously. Conversely, the performance between chemical synapses reaches a steady state.
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Affiliation(s)
- Dong Yu
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
| | - Xiuying Zhou
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
| | - Guowei Wang
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
| | - Qianming Ding
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
| | - Tianyu Li
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
| | - Ya Jia
- Institute of Biophysics and Department of Physics, Central China Normal University, Wuhan, 430079 China
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5
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Abramov O, Bebell KL, Mojzsis SJ. Emergent Bioanalogous Properties of Blockchain-based Distributed Systems. ORIGINS LIFE EVOL B 2021; 51:131-165. [PMID: 34363563 DOI: 10.1007/s11084-021-09608-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 03/27/2021] [Indexed: 11/24/2022]
Abstract
We apply a novel definition of biological systems to a series of reproducible observations on a blockchain-based distributed virtual machine (dVM). We find that such blockchain-based systems display a number of bioanalogous properties, such as response to the environment, growth and change, replication, and homeostasis, that fit some definitions of life. We further present a conceptual model for a simple self-sustaining, self-organizing, self-regulating distributed 'organism' as an operationally closed system that would fulfill all basic definitions and criteria for life, and describe developing technologies, particularly artificial neural network (ANN) based artificial intelligence (AI), that would enable it in the near future. Notably, such systems would have a number of specific advantages over biological life, such as the ability to pass acquired traits to offspring, significantly improved speed, accuracy, and redundancy of their genetic carrier, and potentially unlimited lifespans. Public blockchain-based dVMs provide an uncontained environment for the development of artificial general intelligence (AGI) with the capability to evolve by self-direction.
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Affiliation(s)
- Oleg Abramov
- Planetary Science Institute, 1700 E. Fort Lowell Rd., Suite 106, 85719-2395, Tucson, AZ, USA.
| | | | - Stephen J Mojzsis
- Origins Research Institute, Research Centre for Astronomy and Earth Sciences, 15-17 Konkoly Thege Miklós ut, Budapest, 1121, Hungary.,Department of Lithospheric Research, University Vienna, UZA 2, Althanstrasse 14, 1090, Vienna, Austria.,Department of Geological Sciences, University of Colorado at Boulder, 2200 Colorado Avenue UCB 399, 80309, Boulder, CO, USA
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6
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Weistuch C, Mujica-Parodi LR, Dill K. The Refractory Period Matters: Unifying Mechanisms of Macroscopic Brain Waves. Neural Comput 2021; 33:1145-1163. [PMID: 33617741 DOI: 10.1162/neco_a_01371] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 11/16/2020] [Indexed: 11/04/2022]
Abstract
The relationship between complex brain oscillations and the dynamics of individual neurons is poorly understood. Here we utilize maximum caliber, a dynamical inference principle, to build a minimal yet general model of the collective (mean field) dynamics of large populations of neurons. In agreement with previous experimental observations, we describe a simple, testable mechanism, involving only a single type of neuron, by which many of these complex oscillatory patterns may emerge. Our model predicts that the refractory period of neurons, which has often been neglected, is essential for these behaviors.
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Affiliation(s)
- Corey Weistuch
- Laufer Center for Physical and Quantitative Biology and Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794, U.S.A.
| | - Lilianne R Mujica-Parodi
- Laufer Center for Physical and Quantitative Biology, Departments of Biomedical Engineering and of Physics and Astronomy, Program in Neuroscience, and Department of Chemistry, Stony Brook University, Stony Brook, NY 11794, U.S.A., and Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, U.S.A.
| | - Ken Dill
- Laufer Center for Physical and Quantitative Biology, Department of Physics and Astronomy, and Department of Chemistry, Stony Brook University, Stony Brook, NY 11794, U.S.A.
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7
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Bursting in cerebellar stellate cells induced by pharmacological agents: Non-sequential spike adding. PLoS Comput Biol 2020; 16:e1008463. [PMID: 33315892 PMCID: PMC7769625 DOI: 10.1371/journal.pcbi.1008463] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 12/28/2020] [Accepted: 10/22/2020] [Indexed: 12/26/2022] Open
Abstract
Cerebellar stellate cells (CSCs) are spontaneously active, tonically firing (5-30 Hz), inhibitory interneurons that synapse onto Purkinje cells. We previously analyzed the excitability properties of CSCs, focusing on four key features: type I excitability, non-monotonic first-spike latency, switching in responsiveness and runup (i.e., temporal increase in excitability during whole-cell configuration). In this study, we extend this analysis by using whole-cell configuration to show that these neurons can also burst when treated with certain pharmacological agents separately or jointly. Indeed, treatment with 4-Aminopyridine (4-AP), a partial blocker of delayed rectifier and A-type K+ channels, at low doses induces a bursting profile in CSCs significantly different than that produced at high doses or when it is applied at low doses but with cadmium (Cd2+), a blocker of high voltage-activated (HVA) Ca2+ channels. By expanding a previously revised Hodgkin–Huxley type model, through the inclusion of Ca2+-activated K+ (K(Ca)) and HVA currents, we explain how these bursts are generated and what their underlying dynamics are. Specifically, we demonstrate that the expanded model preserves the four excitability features of CSCs, as well as captures their bursting patterns induced by 4-AP and Cd2+. Model investigation reveals that 4-AP is potentiating HVA, inducing square-wave bursting at low doses and pseudo-plateau bursting at high doses, whereas Cd2+ is potentiating K(Ca), inducing pseudo-plateau bursting when applied in combination with low doses of 4-AP. Using bifurcation analysis, we show that spike adding in square-wave bursts is non-sequential when gradually changing HVA and K(Ca) maximum conductances, delayed Hopf is responsible for generating the plateau segment within the active phase of pseudo-plateau bursts, and bursting can become “chaotic” when HVA and K(Ca) maximum conductances are made low and high, respectively. These results highlight the secondary effects of the drugs applied and suggest that CSCs have all the ingredients needed for bursting. Excitable cells, including neurons, fire action potentials (APs) in their membrane voltage that allow them to communicate with each other and to serve certain physiological purposes. They do so either tonically by firing APs periodically, or episodically by repeatedly firing clusters of APs (called bursts) separated by quiescent periods. Each one of those firing patterns can be neuron-specific and dependent on synaptic inputs and/or their physiological environment. Cerebellar stellate cells (CSCs) that synapse onto Purkinje cells, the sole output of the cerebellum responsible for motor control, are spontaneously active inhibitory interneurons that fire APs tonically. We previously studied the excitability properties of these neurons and showed that they possess several important key features, including type I excitability, runup, non-monotonic first spike latency and switching in responsiveness. In this study, we show that CSCs can also exhibit two modes of burst firing, called square-wave and pseudo-plateau, when treated with certain pharmacological agents. Using bifurcation theory, we demonstrate that spike adding in the square-wave burst is non-sequential, changing by several spikes when certain conductances are altered gradually. This study thus sheds lights onto the overall effects of the pharmacological agents and highlights the ability of CSCs to burst in certain biological conditions.
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8
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Research on cascading high-dimensional isomorphic chaotic maps. Cogn Neurodyn 2020; 15:157-167. [PMID: 33786086 DOI: 10.1007/s11571-020-09583-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 03/02/2020] [Accepted: 03/10/2020] [Indexed: 10/24/2022] Open
Abstract
In order to overcome the security weakness of the discrete chaotic sequence caused by small Lyapunov exponent and keyspace, a general chaotic construction method by cascading multiple high-dimensional isomorphic maps is presented in this paper. Compared with the original map, the parameter space of the resulting chaotic map is enlarged many times. Moreover, the cascaded system has larger chaotic domain and bigger Lyapunov exponents with proper parameters. In order to evaluate the effectiveness of the presented method, the generalized 3-D Hénon map is utilized as an example to analyze the dynamical behaviors under various cascade modes. Diverse maps are obtained by cascading 3-D Hénon maps with different parameters or different permutations. It is worth noting that some new dynamical behaviors, such as coexisting attractors and hyperchaotic attractors are also discovered in cascaded systems. Finally, an application of image encryption is delivered to demonstrate the excellent performance of the obtained chaotic sequences.
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Nazarimehr F, Jafari S, Hashemi Golpayegani SMR, Perc M, Sprott JC. Predicting tipping points of dynamical systems during a period-doubling route to chaos. CHAOS (WOODBURY, N.Y.) 2018; 28:073102. [PMID: 30070493 DOI: 10.1063/1.5038801] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2018] [Accepted: 06/26/2018] [Indexed: 05/21/2023]
Abstract
Classical indicators of tipping points have limitations when they are applied to an ecological and a biological model. For example, they cannot correctly predict tipping points during a period-doubling route to chaos. To counter this limitation, we here try to modify four well-known indicators of tipping points, namely the autocorrelation function, the variance, the kurtosis, and the skewness. In particular, our proposed modification has two steps. First, the dynamic of the considered system is estimated using its time-series. Second, the original time-series is divided into some sub-time-series. In other words, we separate the time-series into different period-components. Then, the four different tipping point indicators are applied to the extracted sub-time-series. We test our approach on an ecological model that describes the logistic growth of populations and on an attention-deficit-disorder model. Both models show different tipping points in a period-doubling route to chaos, and our approach yields excellent results in predicting these tipping points.
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Affiliation(s)
- Fahimeh Nazarimehr
- Biomedical Engineering Department, Amirkabir University of Technology, Tehran 15875-4413, Iran
| | - Sajad Jafari
- Biomedical Engineering Department, Amirkabir University of Technology, Tehran 15875-4413, Iran
| | | | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, Maribor SI-2000, Slovenia
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10
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Computational study on neuronal activities arising in the pre-Bötzinger complex. Cogn Neurodyn 2017; 11:443-451. [PMID: 29067132 DOI: 10.1007/s11571-017-9440-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Revised: 04/08/2017] [Accepted: 04/19/2017] [Indexed: 10/19/2022] Open
Abstract
Experimental investigations have shown that the pre-Bötzinger complex (pre-BötC) within the mammalian brainstem generates the inspiratory phase of respiratory rhythm. Based on a single-compartment model of a pre-BötC inspiratory neuron, we, in this paper, use semi-analytical, numerical as well as fast-slow dynamical methods to investigate the effects of sodium conductance ([Formula: see text]) and potassium conductance ([Formula: see text]) on the firing activities of pre-BötC and try to reveal the dynamical mechanisms behind them. We show how [Formula: see text] and [Formula: see text] affect the bifurcations of the fast-subsystem and how the the firing patterns of pre-BötC transit according to the bifurcations.
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11
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Period doubling cascades of limit cycles in cardiac action potential models as precursors to chaotic early Afterdepolarizations. BMC SYSTEMS BIOLOGY 2017; 11:42. [PMID: 28376924 PMCID: PMC5379775 DOI: 10.1186/s12918-017-0422-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Accepted: 03/24/2017] [Indexed: 12/02/2022]
Abstract
Background Early afterdepolarizations (EADs) are pathological voltage oscillations during the repolarization phase of cardiac action potentials (APs). EADs are caused by drugs, oxidative stress or ion channel disease, and they are considered as potential precursors to cardiac arrhythmias in recent attempts to redefine the cardiac drug safety paradigm. The irregular behaviour of EADs observed in experiments has been previously attributed to chaotic EAD dynamics under periodic pacing, made possible by a homoclinic bifurcation in the fast subsystem of the deterministic AP system of differential equations. Results In this article we demonstrate that a homoclinic bifurcation in the fast subsystem of the action potential model is neither a necessary nor a sufficient condition for the genesis of chaotic EADs. We rather argue that a cascade of period doubling (PD) bifurcations of limit cycles in the full AP system paves the way to chaotic EAD dynamics across a variety of models including a) periodically paced and spontaneously active cardiomyocytes, b) periodically paced and non-active cardiomyocytes as well as c) unpaced and spontaneously active cardiomyocytes. Furthermore, our bifurcation analysis reveals that chaotic EAD dynamics may coexist in a stable manner with fully regular AP dynamics, where only the initial conditions decide which type of dynamics is displayed. Conclusions EADs are a potential source of cardiac arrhythmias and hence are of relevance both from the viewpoint of drug cardiotoxicity testing and the treatment of cardiomyopathies. The model-independent association of chaotic EADs with period doubling cascades of limit cycles introduced in this article opens novel opportunities to study chaotic EADs by means of bifurcation control theory and inverse bifurcation analysis. Furthermore, our results may shed new light on the synchronization and propagation of chaotic EADs in homogeneous and heterogeneous multicellular and cardiac tissue preparations. Electronic supplementary material The online version of this article (doi:10.1186/s12918-017-0422-4) contains supplementary material, which is available to authorized users.
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12
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Dynamics of in-phase and anti-phase bursting in the coupled pre-Bötzinger complex cells. Cogn Neurodyn 2017; 11:91-97. [PMID: 28174615 DOI: 10.1007/s11571-016-9411-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Revised: 08/31/2016] [Accepted: 09/07/2016] [Indexed: 10/21/2022] Open
Abstract
Activity of neurons in the pre-Bötzinger complex within the mammalian brain stem has an important role in the generation of respiratory rhythms. Previous experimental results have shown that the dynamics of sodium and calcium within each cell may be responsible for various bursting mechanisms. In this paper, we study the bursting dynamics of the two-coupled pre-Bötzinger complex neurons. Using a combination of fast-slow decomposition and two-parameter bifurcation analysis, we explore the possible forms of dynamics that the model network can produce as well the transitions of in-phase and anti-phase bursting respectively.
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Jia B, Gu H, Xue L. A basic bifurcation structure from bursting to spiking of injured nerve fibers in a two-dimensional parameter space. Cogn Neurodyn 2017; 11:189-200. [PMID: 28348650 DOI: 10.1007/s11571-017-9422-8] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Revised: 12/22/2016] [Accepted: 01/24/2017] [Indexed: 10/20/2022] Open
Abstract
Two different bifurcation scenarios of firing patterns with decreasing extracellular calcium concentrations were observed in identical sciatic nerve fibers of a chronic constriction injury (CCI) model when the extracellular 4-aminopyridine concentrations were fixed at two different levels. Both processes proceeded from period-1 bursting to period-1 spiking via complex or simple processes. Multiple typical experimental examples manifested dynamics closely matching those simulated in a recently proposed 4-dimensional model to describe the nonlinear dynamics of the CCI model, which included most cases of the bifurcation scenarios. As the extracellular 4-aminopyridine concentrations is increased, the structure of the bifurcation scenario becomes more complex. The results provide a basic framework for identifying the relationships between different neural firing patterns and different bifurcation scenarios and for revealing the complex nonlinear dynamics of neural firing patterns. The potential roles of the basic bifurcation structures in identifying the information process mechanism are discussed.
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Affiliation(s)
- Bing Jia
- State Key Laboratory of Medical Neurobiology, Department of Physiology and Biophysics, School of Life Sciences and Collaborative Innovation Centre for Brain Science, Fudan University, Shanghai, 200438 People's Republic of China
| | - Huaguang Gu
- School of Aerospace Engineering and Applied Mechanics, Tongji University, Shanghai, 200092 People's Republic of China
| | - Lei Xue
- State Key Laboratory of Medical Neurobiology, Department of Physiology and Biophysics, School of Life Sciences and Collaborative Innovation Centre for Brain Science, Fudan University, Shanghai, 200438 People's Republic of China
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14
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Chaos and Hyperchaos in a Model of Ribosome Autocatalytic Synthesis. Sci Rep 2016; 6:38870. [PMID: 27941909 PMCID: PMC5151018 DOI: 10.1038/srep38870] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 11/14/2016] [Indexed: 02/07/2023] Open
Abstract
Any vital activities of the cell are based on the ribosomes, which not only provide the basic machinery for the synthesis of all proteins necessary for cell functioning during growth and division, but for biogenesis itself. From this point of view, ribosomes are self-replicating and autocatalytic structures. In current work we present an elementary model in which the autocatalytic synthesis of ribosomal RNA and proteins, as well as enzymes ensuring their degradation are described with two monotonically increasing functions. For certain parameter values, the model, consisting of one differential equation with delayed argument, demonstrates both stationary and oscillatory dynamics of the ribosomal protein synthesis, which can be chaotic and hyperchaotic dependent on the value of the delayed argument. The biological interpretation of the modeling results and parameter estimation suggest the feasibility of chaotic dynamics in molecular genetic systems of eukaryotes, which depends only on the internal characteristics of functioning of the translation system.
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Paul K, Cauller LJ, Llano DA. Presence of a Chaotic Region at the Sleep-Wake Transition in a Simplified Thalamocortical Circuit Model. Front Comput Neurosci 2016; 10:91. [PMID: 27660609 PMCID: PMC5015482 DOI: 10.3389/fncom.2016.00091] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Accepted: 08/18/2016] [Indexed: 01/20/2023] Open
Abstract
Sleep and wakefulness are characterized by distinct states of thalamocortical network oscillations. The complex interplay of ionic conductances within the thalamo-reticular-cortical network give rise to these multiple modes of activity and a rapid transition exists between these modes. To better understand this transition, we constructed a simplified computational model based on physiological recordings and physiologically realistic parameters of a three-neuron network containing a thalamocortical cell, a thalamic reticular neuron, and a corticothalamic cell. The network can assume multiple states of oscillatory activity, resembling sleep, wakefulness, and the transition between these two. We found that during the transition period, but not during other states, thalamic and cortical neurons displayed chaotic dynamics, based on the presence of strange attractors, estimation of positive Lyapunov exponents and the presence of a fractal dimension in the spike trains. These dynamics were quantitatively dependent on certain features of the network, such as the presence of corticothalamic feedback and the strength of inhibition between the thalamic reticular nucleus and thalamocortical neurons. These data suggest that chaotic dynamics facilitate a rapid transition between sleep and wakefulness and produce a series of experimentally testable predictions to further investigate the events occurring during the sleep-wake transition period.
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Affiliation(s)
- Kush Paul
- Department of Molecular and Integrative Physiology, University of Illinois at Urbana-ChampaignUrbana, IL, USA; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-ChampaignUrbana, IL, USA; School of Behavioral and Brain Sciences, University of Texas at DallasRichardson, TX, USA
| | - Lawrence J Cauller
- School of Behavioral and Brain Sciences, University of Texas at Dallas Richardson, TX, USA
| | - Daniel A Llano
- Department of Molecular and Integrative Physiology, University of Illinois at Urbana-ChampaignUrbana, IL, USA; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-ChampaignUrbana, IL, USA
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16
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Saitou T, Imamura T. Quantitative imaging with Fucci and mathematics to uncover temporal dynamics of cell cycle progression. Dev Growth Differ 2015; 58:6-15. [PMID: 26667991 DOI: 10.1111/dgd.12252] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Revised: 10/17/2015] [Accepted: 10/19/2015] [Indexed: 12/25/2022]
Abstract
Cell cycle progression is strictly coordinated to ensure proper tissue growth, development, and regeneration of multicellular organisms. Spatiotemporal visualization of cell cycle phases directly helps us to obtain a deeper understanding of controlled, multicellular, cell cycle progression. The fluorescent ubiquitination-based cell cycle indicator (Fucci) system allows us to monitor, in living cells, the G1 and the S/G2/M phases of the cell cycle in red and green fluorescent colors, respectively. Since the discovery of Fucci technology, it has found numerous applications in the characterization of the timing of cell cycle phase transitions under diverse conditions and various biological processes. However, due to the complexity of cell cycle dynamics, understanding of specific patterns of cell cycle progression is still far from complete. In order to tackle this issue, quantitative approaches combined with mathematical modeling seem to be essential. Here, we review several studies that attempted to integrate Fucci technology and mathematical models to obtain quantitative information regarding cell cycle regulatory patterns. Focusing on the technological development of utilizing mathematics to retrieve meaningful information from the Fucci producing data, we discuss how the combined methods advance a quantitative understanding of cell cycle regulation.
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Affiliation(s)
- Takashi Saitou
- Translational Research Center, Ehime University Hospital, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan.,Molecular Medicine for Pathogenesis, Graduate School of Medicine, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan.,Division of Bio-imaging, Proteo-Science Center, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan
| | - Takeshi Imamura
- Translational Research Center, Ehime University Hospital, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan.,Molecular Medicine for Pathogenesis, Graduate School of Medicine, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan.,Division of Bio-imaging, Proteo-Science Center, Ehime University, Shitsukawa, Toon, Ehime, 791-0295, Japan
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17
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Ma J, Song X, Tang J, Wang C. Wave emitting and propagation induced by autapse in a forward feedback neuronal network. Neurocomputing 2015. [DOI: 10.1016/j.neucom.2015.04.056] [Citation(s) in RCA: 90] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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18
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Gu H, Pan B. Identification of neural firing patterns, frequency and temporal coding mechanisms in individual aortic baroreceptors. Front Comput Neurosci 2015; 9:108. [PMID: 26379539 PMCID: PMC4549627 DOI: 10.3389/fncom.2015.00108] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Accepted: 08/11/2015] [Indexed: 11/13/2022] Open
Abstract
In rabbit depressor nerve fibers, an on-off firing pattern, period-1 firing, and integer multiple firing with quiescent state were observed as the static pressure level was increased. A bursting pattern with bursts at the systolic phase of blood pressure, continuous firing, and bursting with burst at diastolic phase and quiescent state at systolic phase were observed as the mean level of the dynamic blood pressure was increased. For both static and dynamic pressures, the firing frequency of the first two firing patterns increased and of the last firing pattern decreased due to the quiescent state. If the quiescent state is disregarded, the spike frequency becomes an increasing trend. The instantaneous spike frequency of the systolic phase bursting, continuous firing, and diastolic phase bursting can reflect the temporal process of the systolic phase, whole procedure, and diastolic phase of the dynamic blood pressure signal, respectively. With increasing the static current corresponding to pressure level, the deterministic Hodgkin-Huxley (HH) model manifests a process from a resting state first to period-1 firing via a subcritical Hopf bifurcation and then to a resting state via a supercritical Hopf bifurcation, and the firing frequency increases. The on-off firing and integer multiple firing were here identified as noise-induced firing patterns near the subcritical and supercritical Hopf bifurcation points, respectively, using the stochastic HH model. The systolic phase bursting and diastolic phase bursting were identified as pressure-induced firings near the subcritical and supercritical Hopf bifurcation points, respectively, using an HH model with a dynamic signal. The firing, spike frequency, and instantaneous spike frequency observed in the experiment were simulated and explained using HH models. The results illustrate the dynamics of different firing patterns and the frequency and temporal coding mechanisms of aortic baroreceptor.
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Affiliation(s)
- Huaguang Gu
- School of Aerospace Engineering and Applied Mechanics, Tongji University Shanghai, China
| | - Baobao Pan
- School of Aerospace Engineering and Applied Mechanics, Tongji University Shanghai, China
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19
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Mishra N, Hasse M, Biswal B, Singh HP. Reliability of unstable periodic orbit based control strategies in biological systems. CHAOS (WOODBURY, N.Y.) 2015; 25:043104. [PMID: 25933652 DOI: 10.1063/1.4916899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Presence of recurrent and statistically significant unstable periodic orbits (UPOs) in time series obtained from biological systems is now routinely used as evidence for low dimensional chaos. Extracting accurate dynamical information from the detected UPO trajectories is vital for successful control strategies that either aim to stabilize the system near the fixed point or steer the system away from the periodic orbits. A hybrid UPO detection method from return maps that combines topological recurrence criterion, matrix fit algorithm, and stringent criterion for fixed point location gives accurate and statistically significant UPOs even in the presence of significant noise. Geometry of the return map, frequency of UPOs visiting the same trajectory, length of the data set, strength of the noise, and degree of nonstationarity affect the efficacy of the proposed method. Results suggest that establishing determinism from unambiguous UPO detection is often possible in short data sets with significant noise, but derived dynamical properties are rarely accurate and adequate for controlling the dynamics around these UPOs. A repeat chaos control experiment on epileptic hippocampal slices through more stringent control strategy and adaptive UPO tracking is reinterpreted in this context through simulation of similar control experiments on an analogous but stochastic computer model of epileptic brain slices. Reproduction of equivalent results suggests that far more stringent criteria are needed for linking apparent success of control in such experiments with possible determinism in the underlying dynamics.
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Affiliation(s)
- Nagender Mishra
- Department of Physics & Astrophysics, University of Delhi, Delhi 110007, India
| | - Maria Hasse
- Institut für Höchstleistungsrechnen, Universität Stuttgart, D-70569 Stuttgart, Germany
| | - B Biswal
- Cluster Innovation Center, University of Delhi, Delhi 110007, India
| | - Harinder P Singh
- Department of Physics & Astrophysics, University of Delhi, Delhi 110007, India
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20
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Ruocco G, Fratalocchi A. Period doubling induced by thermal noise amplification in genetic circuits. Sci Rep 2014; 4:7088. [PMID: 25404210 PMCID: PMC5382689 DOI: 10.1038/srep07088] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2014] [Accepted: 10/29/2014] [Indexed: 11/25/2022] Open
Abstract
Rhythms of life are dictated by oscillations, which take place in a wide rage of biological scales. In bacteria, for example, oscillations have been proven to control many fundamental processes, ranging from gene expression to cell divisions. In genetic circuits, oscillations originate from elemental block such as autorepressors and toggle switches, which produce robust and noise-free cycles with well defined frequency. In some circumstances, the oscillation period of biological functions may double, thus generating bistable behaviors whose ultimate origin is at the basis of intense investigations. Motivated by brain studies, we here study an “elemental” genetic circuit, where a simple nonlinear process interacts with a noisy environment. In the proposed system, nonlinearity naturally arises from the mechanism of cooperative stability, which regulates the concentration of a protein produced during a transcription process. In this elemental model, bistability results from the coherent amplification of environmental fluctuations due to a stochastic resonance of nonlinear origin. This suggests that the period doubling observed in many biological functions might result from the intrinsic interplay between nonlinearity and thermal noise.
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Affiliation(s)
- G Ruocco
- 1] PRIMALIGHT, Faculty of Electrical Engineering; Applied Mathematics and Computational Science, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia [2] Sapienza University of Rome, Department of Physics, Piazzale Aldo Moro 5, 00185 Rome, Italy [3] Center for Life Nano Science@Sapienza, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161, Rome, Italy
| | - A Fratalocchi
- PRIMALIGHT, Faculty of Electrical Engineering; Applied Mathematics and Computational Science, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
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Stability switches and double Hopf bifurcation in a two-neural network system with multiple delays. Cogn Neurodyn 2014; 7:505-21. [PMID: 24427223 DOI: 10.1007/s11571-013-9254-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2012] [Revised: 03/22/2013] [Accepted: 04/08/2013] [Indexed: 10/27/2022] Open
Abstract
Time delay is an inevitable factor in neural networks due to the finite propagation velocity and switching speed. Neural system may lose its stability even for very small delay. In this paper, a two-neural network system with the different types of delays involved in self- and neighbor- connection has been investigated. The local asymptotic stability of the equilibrium point is studied by analyzing the corresponding characteristic equation. It is found that the multiple delays can lead the system dynamic behavior to exhibit stability switches. The delay-dependent stability regions are illustrated in the delay-parameter plane, followed which the double Hopf bifurcation points can be obtained from the intersection points of the first and second Hopf bifurcation, i.e., the corresponding characteristic equation has two pairs of imaginary eigenvalues. Taking the delays as the bifurcation parameters, the classification and bifurcation sets are obtained in terms of the central manifold reduction and normal form method. The dynamical behavior of system may exhibit the quasi-periodic solutions due to the Neimark- Sacker bifurcation. Finally, numerical simulations are made to verify the theoretical results.
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Gu H. Biological experimental observations of an unnoticed chaos as simulated by the Hindmarsh-Rose model. PLoS One 2013; 8:e81759. [PMID: 24339962 PMCID: PMC3858313 DOI: 10.1371/journal.pone.0081759] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Accepted: 10/16/2013] [Indexed: 11/18/2022] Open
Abstract
An unnoticed chaotic firing pattern, lying between period-1 and period-2 firing patterns, has received little attention over the past 20 years since it was first simulated in the Hindmarsh-Rose (HR) model. In the present study, the rat sciatic nerve model of chronic constriction injury (CCI) was used as an experimental neural pacemaker to investigate the transition regularities of spontaneous firing patterns. Chaotic firing lying between period-1 and period-2 firings was observed located in four bifurcation scenarios in different, isolated neural pacemakers. These bifurcation scenarios were induced by decreasing extracellular calcium concentrations. The behaviors after period-2 firing pattern in the four scenarios were period-doubling bifurcation not to chaos, period-doubling bifurcation to chaos, period-adding sequences with chaotic firings, and period-adding sequences with stochastic firings. The deterministic structure of the chaotic firing pattern was identified by the first return map of interspike intervals and a short-term prediction using nonlinear prediction. The experimental observations closely match those simulated in a two-dimensional parameter space using the HR model, providing strong evidences of the existence of chaotic firing lying between period-1 and period-2 firing patterns in the actual nervous system. The results also present relationships in the parameter space between this chaotic firing and other firing patterns, such as the chaotic firings that appear after period-2 firing pattern located within the well-known comb-shaped region, periodic firing patterns and stochastic firing patterns, as predicted by the HR model. We hope that this study can focus attention on and help to further the understanding of the unnoticed chaotic neural firing pattern.
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Affiliation(s)
- Huaguang Gu
- School of Aerospace Engineering and Applied Mechanics, Tongji University, Shanghai, China
- * E-mail:
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23
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Gu H. Experimental observation of transition from chaotic bursting to chaotic spiking in a neural pacemaker. CHAOS (WOODBURY, N.Y.) 2013; 23:023126. [PMID: 23822491 DOI: 10.1063/1.4810932] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The transition from chaotic bursting to chaotic spiking has been simulated and analyzed in theoretical neuronal models. In the present study, we report experimental observations in a neural pacemaker of a transition from chaotic bursting to chaotic spiking within a bifurcation scenario from period-1 bursting to period-1 spiking. This was induced by adjusting extracellular calcium or potassium concentrations. The bifurcation scenario began from period-doubling bifurcations or period-adding sequences of bursting pattern. This chaotic bursting is characterized by alternations between multiple continuous spikes and a long duration of quiescence, whereas chaotic spiking is comprised of fast, continuous spikes without periods of quiescence. Chaotic bursting changed to chaotic spiking as long interspike intervals (ISIs) of quiescence disappeared within bursting patterns, drastically decreasing both ISIs and the magnitude of the chaotic attractors. Deterministic structures of the chaotic bursting and spiking patterns are also identified by a short-term prediction. The experimental observations, which agree with published findings in theoretical neuronal models, demonstrate the existence and reveal the dynamics of a neuronal transition from chaotic bursting to chaotic spiking in the nervous system.
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Affiliation(s)
- Huaguang Gu
- School of Aerospace Engineering and Applied Mechanics, Tongji University, Shanghai 200092, China.
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Quail T, McVicar N, Aguilar M, Kim MY, Hodge A, Glass L, Shrier A. Chaotic dynamics in cardiac aggregates induced by potassium channel block. CHAOS (WOODBURY, N.Y.) 2012; 22:033140. [PMID: 23020479 DOI: 10.1063/1.4748854] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Chaotic rhythms in deterministic models can arise as a consequence of changes in model parameters. We carried out experimental studies in which we induced a variety of complex rhythms in aggregates of embryonic chick cardiac cells using E-4031 (1.0-2.5 μM), a drug that blocks the hERG potassium channel. Following the addition of the drug, the regular rhythm evolved to display a spectrum of complex dynamics: irregular rhythms, bursting oscillations, doublets, and accelerated rhythms. The interbeat intervals of the irregular rhythms can be described by one-dimensional return maps consistent with chaotic dynamics. A Hodgkin-Huxley-style cardiac ionic model captured the different types of complex dynamics following blockage of the hERG mediated potassium current.
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Affiliation(s)
- Thomas Quail
- Department of Physiology, McGill University, 3655 Promenade Sir William Osler Montreal, Quebec H3G 1Y6, Canada
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Wei H. A Neural Dynamic Model Based on Activation Diffusion and a Micro-Explanation for Cognitive Operations. INTERNATIONAL JOURNAL OF COGNITIVE INFORMATICS AND NATURAL INTELLIGENCE 2012. [DOI: 10.4018/jcini.2012040101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The neural mechanism of memory has a very close relation with the problem of representation in artificial intelligence. In this paper a computational model was proposed to simulate the network of neurons in brain and how they process information. The model refers to morphological and electrophysiological characteristics of neural information processing, and is based on the assumption that neurons encode their firing sequence. The network structure, functions for neural encoding at different stages, the representation of stimuli in memory, and an algorithm to form a memory were presented. It also analyzed the stability and recall rate for learning and the capacity of memory. Because neural dynamic processes, one succeeding another, achieve a neuron-level and coherent form by which information is represented and processed, it may facilitate examination of various branches of Artificial Intelligence (AI), such as inference, problem solving, pattern recognition, natural language processing and learning. The processes of cognitive manipulation occurring in intelligent behavior have a consistent representation while all being modeled from the perspective of computational neuroscience. Thus, the dynamics of neurons make it possible to explain the inner mechanisms of different intelligent behaviors by a unified model of cognitive architecture at a micro-level.
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