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Janulewicz J, Pietkiewicz M, Ziętara MS. Revision of the Most Primitive Taxa of the Family Gyrodactylidae (van Beneden et Hesse, 1864) (Platyhelminthes, Monopisthocotyla) Based on ITS rDNA Phylogeny. Genes (Basel) 2024; 15:1236. [PMID: 39336827 PMCID: PMC11430952 DOI: 10.3390/genes15091236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 09/19/2024] [Accepted: 09/20/2024] [Indexed: 09/30/2024] Open
Abstract
BACKGROUND For the past 25 years, the ITS rDNA (ITS1-5.8S-ITS2) of Gyrodactylidae has been crucial for species identification, description, and phylogeny. This family includes 25 genera parasitizing marine and freshwater fish, initially distinguished by morphological differences in attachment and/or male copulatory organs. Gyrodactylus Nordmann, 1832, the most species-rich genus, has approximately 500 described species and an additional 25,000 species suspected. The genus is not monophyletic, and the functionally adaptive nature of morphological diagnostic characters complicates the delimitation of new genera. METHODS A phylogeny based on ITS rDNA was proposed to address these challenges, using only complete sequences of primitive taxa. Fifty-four sequences were aligned with the MUSCLE v5.1 algorithm, creating a 1590 ps long matrix. Maximum Likelihood (ML) and Bayesian Inference (BI) methods with the models TVM+F+G4 and SYM+G4 for ITS1-ITS2 and 5.8S, respectively, were inferred using IQ-TREE v2.3.5 and BEAST v2.7.6.0. RESULTS The findings revealed eleven main lineages. Four of them are proposed for classification into new genera: Cichlidarus gen. nov., Iraqemembranatus gen. nov., Macracanthus gen. nov., and Rysavyius gen. nov. Elevating the subgenus G. (Gyrodactylus) to genus rank was supported. CONCLUSIONS The presented phylogeny provides a foundation for developing a classification system within Gyrodactylidae that is both reasonable and comprehensive.
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Affiliation(s)
| | | | - Marek S. Ziętara
- Laboratory of Molecular Evolution and Bioinformatics, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland (M.P.)
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Kvach Y, Kutsokon Y, Bakuma A, Chebotar S, Demchenko V, Didenko A, Snigirov S, Yuryshynets V. Parasite and genetic diversity of big-scale sand smelt (Atherina boyeri Risso, 1810) populations in their natural and expansion ranges in Ukraine. Parasitol Res 2024; 123:154. [PMID: 38446231 DOI: 10.1007/s00436-024-08174-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 02/27/2024] [Indexed: 03/07/2024]
Abstract
The big-scale sand smelt (Atherina boyeri) is an Atlanto-Mediterranean amphidromous fish species found within the Black Sea. Here, we assess differences in the parasite fauna of big-scale sand smelt populations from their natural range in the northwestern Black Sea and from their expansion range in the Lower and Middle River Dnipro. In addition, we undertook a microsatellite analysis to assess the genetic similarity of fish from the different locations. We found that the parasite community of fish in their natural range was wider than that from their expansion range. While the Gulf of Odesa was most distant from all other localities by parasite community composition and the Dnipro Reservoir was characterised by an absence of parasites (newest and most distant expansion locality), only fish from the Danube Delta showed a significant genetic difference. Our results suggest that the parasite community of big-scale sand smelt is primarily influenced by environmental factors, such as habitat type, water salinity and/or prey composition. Both microsatellite analysis and parasite community species composition (e.g. the presence of the marine Telosentis exiguus in the Kakhovka Reservoir and freshwater Raphidascaris sp. in the Gulf of Odesa) confirmed that populations in the River Dnipro reservoirs had, at some time, been connected with native marine populations, thus also confirming the species' amphidromous nature.
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Affiliation(s)
- Yuriy Kvach
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine.
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine.
| | - Yuliya Kutsokon
- Schmalhausen Institute of Zoology, National Academy of Science of Ukraine, B. Khmelnytskoho St., 15, Kyiv, 01054, Ukraine
| | - Alla Bakuma
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
| | - Sabina Chebotar
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine
| | - Viktor Demchenko
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
| | - Alexander Didenko
- Schmalhausen Institute of Zoology, National Academy of Science of Ukraine, B. Khmelnytskoho St., 15, Kyiv, 01054, Ukraine
- Institute of Fisheries, National Academy of Agrarian Science of Ukraine, Obukhivska St., 135, Kyiv, 03164, Ukraine
| | - Sergii Snigirov
- Institute of Marine Biology, National Academy of Science of Ukraine, Pushkinska St., 37, Odesa, 65048, Ukraine
- Odesa I. I. Mechnikov National University, Dvoryanska St., 2, Odesa, 65002, Ukraine
| | - Volodymyr Yuryshynets
- Institute of Hydrobiology, National Academy of Science of Ukraine, Volodymyra Ivasyuka Av., 12, Kyiv, 04210, Ukraine
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Morphological and genetic variability of the cryptic Gyrodactylus sphinx and Gyrodactylus gerasevi n. sp. (Platyhelminthes: Monogenea) from the Mediterranean Sea and Black Sea: two new members of the cross-ocean distributed Gyrodactylus orecchiae species group. J Helminthol 2022; 96:e9. [PMID: 35115061 DOI: 10.1017/s0022149x21000778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Gyrodactylus sphinx Dmitrieva & Gerasev, 2000 is the only species of Gyrodactylus originally described from Aidablennius sphynx (Valenciennes) in the Black Sea. In the present study, monogeneans similar to G. sphinx are reported from the same host and from two other species of Blenniidae from the Black Sea, as well as from the Mediterranean Sea. This study aims to verify the taxonomic status of the specimens found in different hosts and localities, other than the type ones of G. sphinx. Twenty-two measurements of the haptoral structures of 169 gyrodactylids were used for the morphological study. Morphometric variability between different samples was analysed using analysis of variance, multivariate analysis of variance (MANOVA) and principal component analysis (PCA). Molecular studies were carried out using the nuclear internal transcribed spacer 2 and 5.8S ribosomal DNA regions. Network, Bayesian phylogenetic and species delimitation analyses were performed to infer the number of taxonomic units and the phylogeographic relationships occurring within and among them. MANOVA revealed a significant dependence of the morphometry of hamuli and marginal hooks on host species and regions, but a clear differentiation between samples was not confirmed by PCA. Moreover, the ranges of all dimensions overlapped between samples. However, molecular analyses suggested the occurrence of at least two taxonomic entities. The most common entity was present in individuals of the Black and Mediterranean seas, and is described here as Gyrodactylus gerasevi n. sp., whereas a second entity recognized as a G. sphinx was found only in individuals from two localities off Crimea. The monophyletic cluster grouping of these two species was placed within a large clade that also included a separate sister cluster with seven other species of the Gyrodactylus orecchiae cross-ocean species group.
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