Diversity and Ecology of Endohelminth Parasites in a Fish Assemblage of an Amazon River Tributary in Brazil

Component communities and annual and seasonal variations of metazoan parasites in Eleotris pisonis (Gmelin, 1789) (Gobiiformes: Eleotridae) in the Amazon River, Brazil

Our hypothesis for this study was that annual and seasonal variations do not influence the structure of the component communities and the diversity of metazoan parasites of spinycheek sleeper (Eleotris pisonis) in the Amazon River, state of Amapá, Brazil. A total of 164 fish were collected between 2020 and 2021, from which 888 parasites were found. In 2020, five species of parasites were found (one Nematoda, one Digenea, one Acanthocephala, one Arachnida and one Crustacea); and in 2021, five species were also found (three Nematoda, one Digenea and one Crustacea). Larvae of Contracaecum sp. were the dominant taxon throughout the study. The parasite species richness and Brillouin diversity index were higher in 2021, without significant differences between seasonal periods. Some component communities of parasites showed differences between years and between seasonal periods. These facts do not support the hypothesis that such variables would not influence the component communities of the parasites. Lastly, this report provides the first records of Spirocamallanus inopinatus, Genarchella genarchella, Acari, Ergasilus sp., Neoechinorhynchus sp., larvae of Pseudoproleptus sp. and larvae of Contracaecum sp. in E. pisonis.

Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections

A number of key factors can structure the gut microbiota of fish such as environment, diet, health state, and genotype. Mesonauta festivus, an Amazonian cichlid, is a relevant model organism to study the relative contribution of these factors on the community structure of fish gut microbiota. M. festivus has well-studied genetic populations and thrives in rivers with drastically divergent physicochemical characteristics. Here, we collected 167 fish from 12 study sites and used 16S and 18S rRNA metabarcoding approaches to characterize the gut microbiome structure of M. festivus. These data sets were analyzed in light of the host fish genotypes (genotyping-by-sequencing) and an extensive characterization of environmental physico-chemical parameters. We explored the relative contribution of environmental dissimilarity, the presence of parasitic taxa, and phylogenetic relatedness on structuring the gut microbiota. We documented occurrences of Nyctotherus sp. infecting a fish and linked its presence to a dysbiosis of the host gut microbiota. Moreover, we detected the presence of helminths which had a minor impact on the gut microbiota of their host. In addition, our results support a higher impact of the phylogenetic relatedness between fish rather than environmental similarity between sites of study on structuring the gut microbiota for this Amazonian cichlid. Our study in a heterogeneous riverscape integrates a wide range of factors known to structure fish gut microbiomes. It significantly improves understanding of the complex relationship between fish, their parasites, their microbiota, and the environment. IMPORTANCE The gut microbiota is known to play important roles in its host immunity, metabolism, and comportment. Its taxonomic composition is modulated by a complex interplay of factors that are hard to study simultaneously in natural systems. Mesonauta festivus, an Amazonian cichlid, is an interesting model to simultaneously study the influence of multiple variables on the gut microbiota. In this study, we explored the relative contribution of the environmental conditions, the presence of parasitic infections, and the genotype of the host on structuring the gut microbiota of M. festivus in Amazonia. Our results highlighted infections by a parasitic ciliate that caused a disruption of the gut microbiota and by parasitic worms that had a low impact on the microbiota. Finally, our results support a higher impact of the genotype than the environment on structuring the microbiota for this fish. These findings significantly improve understanding of the complex relationship among fish, their parasites, their microbiota, and the environment.