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Zhang Y, Urciuoli A, Zanolli C, Kullmer O, Wu X. Three-dimensional geometric morphometric analysis of the bony labyrinth of Xujiayao 6. J Hum Evol 2024; 189:103514. [PMID: 38547737 DOI: 10.1016/j.jhevol.2024.103514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 02/17/2024] [Accepted: 02/17/2024] [Indexed: 04/08/2024]
Affiliation(s)
- Yameng Zhang
- Joint International Research Laboratory of Environmental and Social Archaeology, Shandong University, Qingdao, 266237, China; Institute of Cultural Heritage, Shandong University, Qingdao, 266237, China
| | - Alessandro Urciuoli
- Universitat Autònoma de Barcelona, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Institut Català de Paleontologia Miquel Crusafont (ICP-CERCA), Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain; Division of Palaeoanthropology, Senckenberg Research Institute and Natural History Museum Frankfurt, Senckenberganlage 25, 60325, Frankfurt am Main, Germany; Universidad de Alcalá, Cátedra de Otoacústica Evolutiva y Paleoantropología (HM Hospitales-UAH), Departamento de Ciencias de la Vida, 28871, Alcalá de Henares, Madrid, Spain.
| | - Clément Zanolli
- Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, F-33600, Pessac, France
| | - Ottmar Kullmer
- Division of Palaeoanthropology, Senckenberg Research Institute and Natural History Museum Frankfurt, Senckenberganlage 25, 60325, Frankfurt am Main, Germany; Department of Paleobiology and Environment, Institute of Ecology, Evolution, and Diversity, Goethe University, Max-von-Laue-Str. 13, 60438 Frankfurt, Germany
| | - Xiujie Wu
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, China.
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2
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Farnell DJJ, Claes P. Initial Steps towards a Multilevel Functional Principal Components Analysis Model of Dynamical Shape Changes. J Imaging 2023; 9:jimaging9040086. [PMID: 37103237 PMCID: PMC10144090 DOI: 10.3390/jimaging9040086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/12/2023] [Accepted: 04/14/2023] [Indexed: 04/28/2023] Open
Abstract
In this article, multilevel principal components analysis (mPCA) is used to treat dynamical changes in shape. Results of standard (single-level) PCA are also presented here as a comparison. Monte Carlo (MC) simulation is used to create univariate data (i.e., a single "outcome" variable) that contain two distinct classes of trajectory with time. MC simulation is also used to create multivariate data of sixteen 2D points that (broadly) represent an eye; these data also have two distinct classes of trajectory (an eye blinking and an eye widening in surprise). This is followed by an application of mPCA and single-level PCA to "real" data consisting of twelve 3D landmarks outlining the mouth that are tracked over all phases of a smile. By consideration of eigenvalues, results for the MC datasets find correctly that variation due to differences in groups between the two classes of trajectories are larger than variation within each group. In both cases, differences in standardized component scores between the two groups are observed as expected. Modes of variation are shown to model the univariate MC data correctly, and good model fits are found for both the "blinking" and "surprised" trajectories for the MC "eye" data. Results for the "smile" data show that the smile trajectory is modelled correctly; that is, the corners of the mouth are drawn backwards and wider during a smile. Furthermore, the first mode of variation at level 1 of the mPCA model shows only subtle and minor changes in mouth shape due to sex; whereas the first mode of variation at level 2 of the mPCA model governs whether the mouth is upturned or downturned. These results are all an excellent test of mPCA, showing that mPCA presents a viable method of modeling dynamical changes in shape.
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Affiliation(s)
| | - Peter Claes
- Medical Imaging Research Center, UZ Leuven, 3000 Leuven, Belgium
- Department of Electrical Engineering, Processing of Speech and Images (ESAT-PSI), KU Leuven, 3000 Leuven, Belgium
- Department of Human Genetics, KU Leuven, 3000 Leuven, Belgium
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3
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Zanolli C, Bouchet F, Fortuny J, Bernardini F, Tuniz C, Alba DM. A reassessment of the distinctiveness of dryopithecine genera from the Iberian Miocene based on enamel-dentine junction geometric morphometric analyses. J Hum Evol 2023; 177:103326. [PMID: 36863301 DOI: 10.1016/j.jhevol.2023.103326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 01/21/2023] [Accepted: 01/21/2023] [Indexed: 03/04/2023]
Abstract
A vast diversity of catarrhines primates has been uncovered in the Middle to Late Miocene (12.5-9.6 Ma) of the Vallès-Penedès Basin (northeastern Spain), including several hominid species (Pierolapithecus catalaunicus, Anoiapithecus brevirostris, Dryopithecus fontani, Hispanopithecus laietanus, and Hispanopithecus crusafonti) plus some remains attributed to 'Sivapithecus' occidentalis (of uncertain taxonomic validity). However, Pierolapithecus and Anoiapithecus have also been considered junior synonyms of Dryopithecus by some authors, which entail a lower generic diversity and an inflated intrageneric variation of the latter genus. Since the distinction of these taxa partly relies on dental features, the detailed and quantitative analysis of tooth shape might help disentangling the taxonomic diversity of these Miocene hominids. Using diffeomorphic surface matching and three-dimensional geometric morphometrics, we investigate the enamel-dentine junction shape (which is a reliable taxonomic proxy) of these Miocene hominids, with the aim of investigating their degree of intra- and intergeneric variation compared with that of extant great ape genera. We conducted statistical analyses, including between-group principal component analyses, canonical variate analyses, and permutation tests, to investigate whether the individual and combined (i.e., Dryopithecus s.l.) variation of the extinct genera exceeds that of the extant great apes. Our results indicate that Pierolapithecus, Anoiapithecus, Dryopithecus, and Hispanopithecus show morphological differences of enamel-dentine junction shape relative to the extant great apes that are consistent with their attribution to different genera. Specifically, the variation displayed by the Middle Miocene taxa combined exceeds that of extant great ape genera, thus undermining the single-genus hypothesis. 'Sivapithecus' occidentalis specimens fall close to Dryopithecus but in the absence of well-preserved comparable teeth for Pierolapithecus and Anoiapithecus, their taxonomic attribution remains uncertain. Among the Hispanopithecus sample, IPS1802 from Can Llobateres stands out and might either be an outlier in terms of morphology, or represent another dryopithecine taxon.
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Affiliation(s)
- Clément Zanolli
- Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, F-33600 Pessac, France.
| | - Florian Bouchet
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Josep Fortuny
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Federico Bernardini
- Department of Humanistic Studies, Università Ca'Foscari, Venezia, Italy; Multidisciplinary Laboratory, 'Abdus Salam' International Centre for Theoretical Physics, Via Beirut 31, 34151 Trieste, Italy
| | - Claudio Tuniz
- Multidisciplinary Laboratory, 'Abdus Salam' International Centre for Theoretical Physics, Via Beirut 31, 34151 Trieste, Italy
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain.
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4
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Arias-Martorell J, Urciuoli A, Almécija S, Alba DM, Nakatsukasa M. The radial head of the Middle Miocene ape Nacholapithecus kerioi: Morphometric affinities, locomotor inferences, and implications for the evolution of the hominoid humeroradial joint. J Hum Evol 2023; 178:103345. [PMID: 36933453 DOI: 10.1016/j.jhevol.2023.103345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 02/14/2023] [Accepted: 02/15/2023] [Indexed: 03/18/2023]
Affiliation(s)
- Julia Arias-Martorell
- Institut Català de Paleontologia Miquel Crusafont, Universitat Auntònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; School of Anthropology and Conservation, Marlowe Building, University of Kent, Canterbury, CT2 7NR, UK.
| | - Alessandro Urciuoli
- Universitat Autònoma de Barcelona, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Division of Palaeoanthropology, Senckenberg Research Institute and Natural History Museum Frankfurt, Frankfurt am Main, Germany; Institut Català de Paleontologia Miquel Crusafont, Universitat Auntònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Sergio Almécija
- Division of Anthropology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; New York Consortium in Evolutionary Primatology, New York, NY 10024, USA; Institut Català de Paleontologia Miquel Crusafont, Universitat Auntònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Auntònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Masato Nakatsukasa
- Laboratory of Physical Anthropology, Graduate School of Science, Kyoto University, 606-8502 Kyoto, Japan
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Can we Restore Balance to Geometric Morphometrics? A Theoretical Evaluation of how Sample Imbalance Conditions Ordination and Classification. Evol Biol 2022. [DOI: 10.1007/s11692-022-09590-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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6
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Llambrich S, González-Colom R, Wouters J, Roldán J, Salassa S, Wouters K, Van Bulck V, Sharpe J, Callaerts-Vegh Z, Vande Velde G, Martínez-Abadías N. Green Tea Catechins Modulate Skeletal Development with Effects Dependent on Dose, Time, and Structure in a down Syndrome Mouse Model. Nutrients 2022; 14:nu14194167. [PMID: 36235819 PMCID: PMC9572077 DOI: 10.3390/nu14194167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 09/30/2022] [Accepted: 10/03/2022] [Indexed: 11/26/2022] Open
Abstract
Altered skeletal development in Down syndrome (DS) results in a brachycephalic skull, flattened face, shorter mandibular ramus, shorter limbs, and reduced bone mineral density (BMD). Our previous study showed that low doses of green tea extract enriched in epigallocatechin-3-gallate (GTE-EGCG), administered continuously from embryonic day 9 to postnatal day 29, reduced facial dysmorphologies in the Ts65Dn (TS) mouse model of DS, but high doses could exacerbate them. Here, we extended the analyses to other skeletal structures and systematically evaluated the effects of high and low doses of GTE-EGCG treatment over postnatal development in wild-type (WT) and TS mice using in vivo µCT and geometric morphometrics. TS mice developed shorter and wider faces, skulls, and mandibles, together with shorter and narrower humerus and scapula, and reduced BMD dynamically over time. Besides facial morphology, GTE-EGCG did not rescue any other skeletal phenotype in TS treated mice. In WT mice, GTE-EGCG significantly altered the shape of the skull and mandible, reduced the length and width of the long bones, and lowered the BMD. The disparate effects of GTE-EGCG depended on the dose, developmental timepoint, and anatomical structure analyzed, emphasizing the complex nature of DS and the need to further investigate the simultaneous effects of GTE-EGCG supplementation.
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Affiliation(s)
- Sergi Llambrich
- Biomedical MRI, Department of Imaging and Pathology, University of Leuven (KU Leuven), 3000 Leuven, Belgium
| | - Rubèn González-Colom
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (BEECA), Facultat de Biologia, Universitat de Barcelona (UB), 08028 Barcelona, Spain
| | - Jens Wouters
- Biomedical MRI, Department of Imaging and Pathology, University of Leuven (KU Leuven), 3000 Leuven, Belgium
| | - Jorge Roldán
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (BEECA), Facultat de Biologia, Universitat de Barcelona (UB), 08028 Barcelona, Spain
| | - Sara Salassa
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (BEECA), Facultat de Biologia, Universitat de Barcelona (UB), 08028 Barcelona, Spain
| | - Kaat Wouters
- Laboratory of Biological Psychology, University of Leuven (KU Leuven), 3000 Leuven, Belgium
| | - Vicky Van Bulck
- Laboratory of Biological Psychology, University of Leuven (KU Leuven), 3000 Leuven, Belgium
| | - James Sharpe
- Center for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain
- Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08003 Barcelona, Spain
- EMBL Barcelona, European Molecular Biology Laboratory, 08003 Barcelona, Spain
| | | | - Greetje Vande Velde
- Biomedical MRI, Department of Imaging and Pathology, University of Leuven (KU Leuven), 3000 Leuven, Belgium
- Correspondence: (G.V.V.); (N.M.-A.); Tel.: +32-16330924 (G.V.V.); +34-934034564 (N.M.-A.)
| | - Neus Martínez-Abadías
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (BEECA), Facultat de Biologia, Universitat de Barcelona (UB), 08028 Barcelona, Spain
- Correspondence: (G.V.V.); (N.M.-A.); Tel.: +32-16330924 (G.V.V.); +34-934034564 (N.M.-A.)
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7
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Le Maître A, Guy F, Merceron G, Kostopoulos DS. Morphology of the Bony Labyrinth Supports the Affinities of Paradolichopithecus with the Papionina. INT J PRIMATOL 2022; 44:209-236. [PMID: 36817734 PMCID: PMC9931825 DOI: 10.1007/s10764-022-00329-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 08/26/2022] [Indexed: 10/14/2022]
Abstract
Discoveries in recent decades indicate that the large papionin monkeys Paradolipopithecus and Procynocephalus are key members of the Late Pliocene - Early Pleistocene mammalian faunas of Eurasia. However, their taxonomical status, phylogenetic relationships, and ecological profile remain unclear. Here we investigate the two latter aspects through the study of the inner ear anatomy, as revealed by applying micro-CT scan imaging techniques on the cranium LGPUT DFN3-150 of Paradolichopithecus from the lower Pleistocene (2.3 Ma) fossil site Dafnero-3 in Northwestern Greece. Using geometric morphometric methods, we quantified shape variation and the allometric and phylogenetic signals in extant cercopithecines (n = 80), and explored the morphological affinities of the fossil specimen with extant taxa. LGPUT DFN3-150 has a large centroid size similar to that of baboons and their relatives. It shares several shape features with Macacina and Cercopithecini, which we interpret as probable retention of a primitive morphology. Overall, its inner ear morphology is more consistent with a stem Papionini more closely related to Papionina than Macacina, or to a basal crown Papionina. Our results, along with morphometrical and ecological features from previous studies, call into question the traditional hypothesis of a Paradolichopithecus-Macacina clade, and provide alternative perspectives in the study of Eurasian primate evolution during the late Neogene-Quaternary. Supplementary Information The online version contains supplementary material available at 10.1007/s10764-022-00329-4.
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Affiliation(s)
- Anne Le Maître
- Department of Evolutionary Biology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
- PALEVOPRIM - UMR 7262 CNRS INEE, Université de Poitiers, Poitiers, France
| | - Franck Guy
- PALEVOPRIM - UMR 7262 CNRS INEE, Université de Poitiers, Poitiers, France
| | - Gildas Merceron
- PALEVOPRIM - UMR 7262 CNRS INEE, Université de Poitiers, Poitiers, France
| | - Dimitris S Kostopoulos
- Laboratory of Geology and Palaeontology, Aristotle University of Thessaloniki, Thessaloniki, Greece
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Mitteroecker P, Schaefer K. Thirty years of geometric morphometrics: Achievements, challenges, and the ongoing quest for biological meaningfulness. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2022; 178 Suppl 74:181-210. [PMID: 36790612 PMCID: PMC9545184 DOI: 10.1002/ajpa.24531] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 03/28/2022] [Accepted: 04/17/2022] [Indexed: 12/30/2022]
Abstract
The foundations of geometric morphometrics were worked out about 30 years ago and have continually been refined and extended. What has remained as a central thrust and source of debate in the morphometrics community is the shared goal of meaningful biological inference through a tight connection between biological theory, measurement, multivariate biostatistics, and geometry. Here we review the building blocks of modern geometric morphometrics: the representation of organismal geometry by landmarks and semilandmarks, the computation of shape or form variables via superimposition, the visualization of statistical results as actual shapes or forms, the decomposition of shape variation into symmetric and asymmetric components and into different spatial scales, the interpretation of various geometries in shape or form space, and models of the association between shape or form and other variables, such as environmental, genetic, or behavioral data. We focus on recent developments and current methodological challenges, especially those arising from the increasing number of landmarks and semilandmarks, and emphasize the importance of thorough exploratory multivariate analyses rather than single scalar summary statistics. We outline promising directions for further research and for the evaluation of new developments, such as "landmark-free" approaches. To illustrate these methods, we analyze three-dimensional human face shape based on data from the Avon Longitudinal Study of Parents and Children (ALSPAC).
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Affiliation(s)
- Philipp Mitteroecker
- Department of Evolutionary Biology, Unit for Theoretical BiologyUniversity of ViennaViennaAustria
| | - Katrin Schaefer
- Department of Evolutionary AnthropologyUniversity of ViennaViennaAustria,Human Evolution and Archaeological Sciences (HEAS)University of ViennaViennaAustria
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9
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Early Pleistocene hominin teeth from Gongwangling of Lantian, Central China. J Hum Evol 2022; 168:103212. [DOI: 10.1016/j.jhevol.2022.103212] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 04/24/2022] [Accepted: 04/24/2022] [Indexed: 11/18/2022]
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10
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Wang B, Zelditch M, Badgley C. Geometric morphometrics of mandibles for dietary differentiation of Bovidae (Mammalia: Artiodactyla). Curr Zool 2022; 68:237-249. [PMID: 35592346 PMCID: PMC9113326 DOI: 10.1093/cz/zoab036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 04/27/2021] [Indexed: 11/13/2022] Open
Abstract
The mammalian family Bovidae has been widely studied in ecomorphological research, with important applications to paleoecological and paleohabitat reconstructions. Most studies of bovid craniomandibular features in relation to diet have used linear measurements. In this study, we conduct landmark-based geometric-morphometric analyses to evaluate whether different dietary groups can be distinguished by mandibular morphology. Our analysis includes data for 100 species of extant bovids, covering all bovid tribes and 2 dietary classifications. For the first classification with 3 feeding categories, we found that browsers (including frugivores), mixed feeders, and grazers are moderately well separated using mandibular shape. A finer dietary classification (frugivore, browser, browser-grazer intermediate, generalist, variable grazer, and obligate grazer) proved to be more useful for differentiating dietary extremes (frugivores and obligate grazers) but performed equally or less well for other groups. Notably, frugivorous bovids, which belong in tribe Cephalophini, have a distinct mandibular shape that is readily distinguished from all other dietary groups, yielding a 100% correct classification rate from jackknife cross-validation. The main differences in mandibular shape found among dietary groups are related to the functional needs of species during forage prehension and mastication. Compared with browsers, both frugivores and grazers have mandibles that are adapted for higher biomechanical demand of chewing. Additionally, frugivore mandibles are adapted for selective cropping. Our results call for more work on the feeding ecology and functional morphology of frugivores and offer an approach for reconstructing the diet of extinct bovids.
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Affiliation(s)
- Bian Wang
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, 48109-1005, USA.,Museum of Paleontology, University of Michigan, Ann Arbor, MI, 48109-1085, USA
| | - Miriam Zelditch
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, 48109-1085, USA
| | - Catherine Badgley
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, 48109-1085, USA.,Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, 48109-1085, USA
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11
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A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos. Nat Commun 2022; 13:2557. [PMID: 35581187 PMCID: PMC9114389 DOI: 10.1038/s41467-022-29923-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 04/05/2022] [Indexed: 11/17/2022] Open
Abstract
The Pleistocene presence of the genus Homo in continental Southeast Asia is primarily evidenced by a sparse stone tool record and rare human remains. Here we report a Middle Pleistocene hominin specimen from Laos, with the discovery of a molar from the Tam Ngu Hao 2 (Cobra Cave) limestone cave in the Annamite Mountains. The age of the fossil-bearing breccia ranges between 164–131 kyr, based on the Bayesian modelling of luminescence dating of the sedimentary matrix from which it was recovered, U-series dating of an overlying flowstone, and U-series–ESR dating of associated faunal teeth. Analyses of the internal structure of the molar in tandem with palaeoproteomic analyses of the enamel indicate that the tooth derives from a young, likely female, Homo individual. The close morphological affinities with the Xiahe specimen from China indicate that they belong to the same taxon and that Tam Ngu Hao 2 most likely represents a Denisovan. Evidence for the presence of Homo during the Middle Pleistocene is limited in continental Southeast Asia. Here, the authors report a hominin molar from Tam Ngu Hao 2 (Cobra Cave), dated to 164–131 kyr. They use morphological and paleoproteomic analysis to show that it likely belonged to a female Denisovan.
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12
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Andrea C. As fast as a hare: did intraspecific morphological change bring the Hallands Väderö Island population of Lepus timidus close to interspecific differences in less than 150 years? ZOOLOGY 2022; 152:126014. [DOI: 10.1016/j.zool.2022.126014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 04/15/2022] [Accepted: 04/18/2022] [Indexed: 11/28/2022]
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13
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Farnell DJJ. An Exploration of Pathologies of Multilevel Principal Components Analysis in Statistical Models of Shape. J Imaging 2022; 8:jimaging8030063. [PMID: 35324618 PMCID: PMC8950128 DOI: 10.3390/jimaging8030063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 02/22/2022] [Accepted: 03/01/2022] [Indexed: 12/10/2022] Open
Abstract
3D facial surface imaging is a useful tool in dentistry and in terms of diagnostics and treatment planning. Between-group PCA (bgPCA) is a method that has been used to analyse shapes in biological morphometrics, although various “pathologies” of bgPCA have recently been proposed. Monte Carlo (MC) simulated datasets were created here in order to explore “pathologies” of multilevel PCA (mPCA), where mPCA with two levels is equivalent to bgPCA. The first set of MC experiments involved 300 uncorrelated normally distributed variables, whereas the second set of MC experiments used correlated multivariate MC data describing 3D facial shape. We confirmed results of numerical experiments from other researchers that indicated that bgPCA (and so also mPCA) can give a false impression of strong differences in component scores between groups when there is none in reality. These spurious differences in component scores via mPCA decreased significantly as the sample sizes per group were increased. Eigenvalues via mPCA were also found to be strongly affected by imbalances in sample sizes per group, although this problem was removed by using weighted forms of covariance matrices suggested by the maximum likelihood solution of the two-level model. However, this did not solve problems of spurious differences between groups in these simulations, which was driven by very small sample sizes in one group. As a “rule of thumb” only, all of our experiments indicate that reasonable results are obtained when sample sizes per group in all groups are at least equal to the number of variables. Interestingly, the sum of all eigenvalues over both levels via mPCA scaled approximately linearly with the inverse of the sample size per group in all experiments. Finally, between-group variation was added explicitly to the MC data generation model in two experiments considered here. Results for the sum of all eigenvalues via mPCA predicted the asymptotic amount for the total amount of variance correctly in this case, whereas standard “single-level” PCA underestimated this quantity.
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Affiliation(s)
- Damian J J Farnell
- School of Dentistry, Cardiff University, Heath Park, Cardiff CF14 4XY, UK
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14
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Slimak L, Zanolli C, Higham T, Frouin M, Schwenninger JL, Arnold LJ, Demuro M, Douka K, Mercier N, Guérin G, Valladas H, Yvorra P, Giraud Y, Seguin-Orlando A, Orlando L, Lewis JE, Muth X, Camus H, Vandevelde S, Buckley M, Mallol C, Stringer C, Metz L. Modern human incursion into Neanderthal territories 54,000 years ago at Mandrin, France. SCIENCE ADVANCES 2022; 8:eabj9496. [PMID: 35138885 PMCID: PMC8827661 DOI: 10.1126/sciadv.abj9496] [Citation(s) in RCA: 36] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Determining the extent of overlap between modern humans and other hominins in Eurasia, such as Neanderthals and Denisovans, is fundamental to understanding the nature of their interactions and what led to the disappearance of archaic hominins. Apart from a possible sporadic pulse recorded in Greece during the Middle Pleistocene, the first settlements of modern humans in Europe have been constrained to ~45,000 to 43,000 years ago. Here, we report hominin fossils from Grotte Mandrin in France that reveal the earliest known presence of modern humans in Europe between 56,800 and 51,700 years ago. This early modern human incursion in the Rhône Valley is associated with technologies unknown in any industry of that age outside Africa or the Levant. Mandrin documents the first alternating occupation of Neanderthals and modern humans, with a modern human fossil and associated Neronian lithic industry found stratigraphically between layers containing Neanderthal remains associated with Mousterian industries.
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Affiliation(s)
- Ludovic Slimak
- CNRS, UMR 5608, TRACES, Université de Toulouse Jean Jaurès, 5 Allées Antonio Machado, 31058 Toulouse Cedex 9, France
- Corresponding author. (L.S.); (C.Z.)
| | - Clément Zanolli
- Université de Bordeaux, CNRS, MCC, PACEA, UMR 5199, 33600 Pessac, France
- Corresponding author. (L.S.); (C.Z.)
| | - Tom Higham
- Research Laboratory for Archaeology and the History of Art, University of Oxford, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK
- Department of Evolutionary Anthropology, University of Vienna, University Biology Building, Djerassiplatz 1, A-1030 Vienna, Austria
| | - Marine Frouin
- Research Laboratory for Archaeology and the History of Art, University of Oxford, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK
- Department of Geosciences, Stony Brook University, 255 Earth and Space Sciences Building, Stony Brook, NY 11794-2100, USA
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY 11794-4364, USA
| | - Jean-Luc Schwenninger
- Research Laboratory for Archaeology and the History of Art, University of Oxford, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK
| | - Lee J. Arnold
- School of Physical Sciences, Environment Institute, Institute for Photonics and Advanced Sensing (IPAS), University of Adelaide, North Terrace Campus, Adelaide, SA 5005, Australia
| | - Martina Demuro
- School of Physical Sciences, Environment Institute, Institute for Photonics and Advanced Sensing (IPAS), University of Adelaide, North Terrace Campus, Adelaide, SA 5005, Australia
| | - Katerina Douka
- Department of Evolutionary Anthropology, University of Vienna, University Biology Building, Djerassiplatz 1, A-1030 Vienna, Austria
- Department of Archaeology, Max Planck Institute for the Science of Human History, Kahlaische, Str. 10, 07745 Jena, Germany
| | - Norbert Mercier
- CNRS, UMR 5060, Institut de Recherche sur les Archéomatériaux and Centre de Recherche en Physique Appliquée à l’Archéologie (CRP2A), Maison de l’Archéologie, Université Bordeaux Montaigne, 33607 Pessac, France
| | - Gilles Guérin
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, UMR 8212 CEA CNRS UVSQ, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Hélène Valladas
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, UMR 8212 CEA CNRS UVSQ, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Pascale Yvorra
- Aix-Marseille Université, CNRS, Min. Culture, UMR 7269, LAMPEA, Maison Méditerranéenne des Sciences de l’Homme, BP 647, 5 rue du Château de l’Horloge, F-13094, Aix-en-Provence Cedex 2, France
| | - Yves Giraud
- Aix-Marseille Université, CNRS, Min. Culture, UMR 7269, LAMPEA, Maison Méditerranéenne des Sciences de l’Homme, BP 647, 5 rue du Château de l’Horloge, F-13094, Aix-en-Provence Cedex 2, France
| | | | - Ludovic Orlando
- CNRS, UMR 5288, CAGT, Université Toulouse III Paul Sabatier, Toulouse, France
| | - Jason E. Lewis
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY 11794-4364, USA
- Department of Anthropology, Stony Brook University, Stony Brook, NY 11794-4364, USA
| | | | - Hubert Camus
- PROTEE-EXPERT, 4 rue des Aspholdèles, 34750 Villeneuve-lès-Maguelone, France
| | - Ségolène Vandevelde
- Laboratoire des Sciences du Climat et de l’Environnement, LSCE/IPSL, UMR 8212 CEA CNRS UVSQ, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
- Université Paris 1–Panthéon-Sorbonne, Équipe Archéologies Environnementales, UMR 7041, ArScAn, Équipe Archéologies Environnementales, 21 allée de l’Université, 92023 Nanterre Cedex, France
| | - Mike Buckley
- Department of Earth and Environmental Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Carolina Mallol
- Archaeological Micromorphology and Biomarkers Laboratory (AMBI Lab), Instituto Universitario de Bio-Orgánica Antonio González, Departamento de Geografía e Historia, UDI Prehistoria, Arqueología e Historia Antigua, Facultad de Geografía e Historia, Universidad de La Laguna, Tenerife, Spain
| | - Chris Stringer
- Centre for Human Evolution Research (CHER), Department of Earth Sciences, Natural History Museum, London SW7 5BD, UK
| | - Laure Metz
- Aix-Marseille Université, CNRS, Min. Culture, UMR 7269, LAMPEA, Maison Méditerranéenne des Sciences de l’Homme, BP 647, 5 rue du Château de l’Horloge, F-13094, Aix-en-Provence Cedex 2, France
- College of Liberal Arts and Sciences, University of Connecticut, 215 Glenbrook Road, U-4098, Storrs, CT 06269-4098, USA
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15
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Zanolli C, Kaifu Y, Pan L, Xing S, Mijares AS, Kullmer O, Schrenk F, Corny J, Dizon E, Robles E, Détroit F. Further analyses of the structural organization of Homo luzonensis teeth: Evolutionary implications. J Hum Evol 2022; 163:103124. [PMID: 34998272 DOI: 10.1016/j.jhevol.2021.103124] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 11/22/2021] [Accepted: 11/22/2021] [Indexed: 01/13/2023]
Abstract
The species Homo luzonensis has recently been described based on a set of dental and postcranial elements found at Callao Cave (Northern Luzon, Philippines) and dated to at least 50-67 ka. Seven postcanine maxillary teeth are attributed to this taxon, five of them belonging to the same individual (CCH6) and representing the holotype of H. luzonensis, whereas the isolated upper premolar CCH8 and the upper third molar CCH9 are paratypes of the species. The teeth are characterized by their small dimensions associated with primitive features, as also found in Homo floresiensis, another hominin having evolved in an insular environment of Southeast Asia. Postcranial bones of the hands and feet of H. luzonensis and H. floresiensis show Homo habilis-like or australopith-like features, whereas cranial and dental morphology are more consistent with the Asian Homo erectus morphology. Due to this mosaic morphology, the origin and phylogenetic relationships of both H. luzonensis and H. floresiensis are still debated. To test the hypotheses that H. luzonensis derives from H. erectus or from an earlier small-brained hominin, we analyzed the µCT scans of the teeth. We investigated both external and internal tooth structure using morphometric methods including: crown outline shape, tooth crown tissue proportions, enamel-dentine junction shape, and pulp morphology. Homo luzonensis external crown morphology aligns more with H. erectus than with H. habilis/H. rudolfensis. The internal structural organization of H. luzonensis teeth exhibits more affinities with that of H. erectus and H. floresiensis than with Neanderthals and modern humans. Our results suggest that both H. floresiensis and H. luzonensis likely evolved from some H. erectus groups that dispersed in the various islands of this region and became isolated until endemic speciation events occurred at least twice during the Pleistocene in insular environments.
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Affiliation(s)
- Clément Zanolli
- Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, F-33600 Pessac, France.
| | - Yousuke Kaifu
- The University Museum, The University of Tokyo, Tokyo, 113-0033, Japan
| | - Lei Pan
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China; CAS Center for Excellence in Life and Paleoenvironment, Beijing, 100044, China
| | - Song Xing
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, 100044, China; CAS Center for Excellence in Life and Paleoenvironment, Beijing, 100044, China
| | - Armand S Mijares
- Archaeological Studies Program, University of the Philippines, Quezon City 1101, Philippines; National Museum of the Philippines, Manila 1000, Philippines
| | - Ottmar Kullmer
- Division of Palaeoanthropology, Senckenberg Research Institute and Natural History Museum Frankfurt, Frankfurt, Germany; Department of Palaeobiology and Environment, Institute of Ecology, Evolution, and Diversity, Goethe University Frankfurt, Frankfurt, Germany
| | - Friedemann Schrenk
- Division of Palaeoanthropology, Senckenberg Research Institute and Natural History Museum Frankfurt, Frankfurt, Germany; Department of Palaeobiology and Environment, Institute of Ecology, Evolution, and Diversity, Goethe University Frankfurt, Frankfurt, Germany
| | - Julien Corny
- UMR 7194, CNRS, Département Homme & Environnement, Muséum National D'Histoire Naturelle, Musée de L'Homme, 75016 Paris, France
| | - Eusebio Dizon
- National Museum of the Philippines, Manila 1000, Philippines
| | - Emil Robles
- Archaeological Studies Program, University of the Philippines, Quezon City 1101, Philippines
| | - Florent Détroit
- UMR 7194, CNRS, Département Homme & Environnement, Muséum National D'Histoire Naturelle, Musée de L'Homme, 75016 Paris, France.
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16
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Bouchet F, Urciuoli A, Beaudet A, Pina M, Moyà-Solà S, Alba DM. Comparative anatomy of the carotid canal in the Miocene small-bodied catarrhine Pliobates cataloniae. J Hum Evol 2021; 161:103073. [PMID: 34628300 DOI: 10.1016/j.jhevol.2021.103073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 08/24/2021] [Accepted: 08/25/2021] [Indexed: 01/12/2023]
Abstract
The small-bodied Miocene catarrhine Pliobates cataloniae (11.6 Ma, Spain) displays a mosaic of catarrhine symplesiomorphies and hominoid synapomorphies that hinders deciphering its phylogenetic relationships. Based on cladistic analyses, it has been interpreted as a stem hominoid or as a pliopithecoid. Intriguingly, the carotid canal orientation of Pliobates was originally described as hylobatid-like. The variation in carotid canal morphology among anthropoid clades shown in previous studies suggests that this structure might be phylogenetically informative. However, its potential for phylogenetic reconstruction among extinct catarrhines remains largely unexplored. Here we quantify the orientation, proportions, and course of the carotid canal in Pliobates, extant anthropoids and other Miocene catarrhines (Epipliopithecus, Victoriapithecus, and Ekembo) using three-dimensional morphometric techniques. We also compute phylogenetic signal and reconstruct the ancestral carotid canal course for main anthropoid clades. Our results reveal that carotid canal morphology embeds strong phylogenetic signal but mostly discriminates between platyrrhines and catarrhines, with an extensive overlap among extant catarrhine families. The analyzed extinct taxa display a quite similar carotid canal morphology more closely resembling that of extant catarrhines. Nevertheless, our results for Pliobates highlight some differences compared with the pliopithecid Epipliopithecus, which displays a somewhat more platyrrhine-like morphology. In contrast, Pliobates appears as derived toward the modern catarrhine condition as the stem cercopithecid Victoriapithecus and the stem hominoid Ekembo, which more closely resemble one another. Moreover, Pliobates appears somewhat derived toward the reconstructed ancestral hominoid morphotype, being more similar than other Miocene catarrhines to the condition of great apes and the hylobatid Symphalangus. Overall, our results rule out previously noted similarities in carotid canal morphology between Pliobates and hylobatids, but do not show particular similarities with pliopithecoids either-as opposed to extant and other extinct catarrhines. Additional analyses will be required to clarify the phylogenetic relationships of Pliobates, particularly given its dental similarities with dendropithecids.
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Affiliation(s)
- Florian Bouchet
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain.
| | - Alessandro Urciuoli
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Amélie Beaudet
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Department of Archaeology, University of Cambridge, The Old Schools, Trinity Lane, Cambridge CB2 1TN, UK; School of Geography, Archaeology and Environmental Studies, University of the Witwatersrand, 1 Jan Smuts Avenue, Braamfontein 2000, Johannesburg, South Africa; Department of Anatomy, University of Pretoria, Lynnwood Road, Hatfield 0002, Pretoria, South Africa
| | - Marta Pina
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Department of Earth and Environmental Sciences, University of Manchester, Williamson Building, Oxford Road, Manchester M13 9PL, UK
| | - Salvador Moyà-Solà
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig de Lluís Companys 23, 08010 Barcelona, Spain; Unitat d'Antropologia (Dept. BABVE), Universitat Autònoma de Barcelona, Edifici C, Facultat de Biociències, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain.
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17
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Cardini A, de Jong YA, Butynski TM. Can morphotaxa be assessed with photographs? Estimating the accuracy of two-dimensional cranial geometric morphometrics for the study of threatened populations of African monkeys. Anat Rec (Hoboken) 2021; 305:1402-1434. [PMID: 34596361 PMCID: PMC9298422 DOI: 10.1002/ar.24787] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 08/23/2021] [Accepted: 08/26/2021] [Indexed: 11/09/2022]
Abstract
The classification of most mammalian orders and families is under debate and the number of species is likely greater than currently recognized. Improving taxonomic knowledge is crucial, as biodiversity is in rapid decline. Morphology is a source of taxonomic knowledge, and geometric morphometrics applied to two dimensional (2D) photographs of anatomical structures is commonly employed for quantifying differences within and among lineages. Photographs are informative, easy to obtain, and low cost. 2D analyses, however, introduce a large source of measurement error when applied to crania and other highly three dimensional (3D) structures. To explore the potential of 2D analyses for assessing taxonomic diversity, we use patas monkeys (Erythrocebus), a genus of large, semi-terrestrial, African guenons, as a case study. By applying a range of tests to compare ventral views of adult crania measured both in 2D and 3D, we show that, despite inaccuracies accounting for up to one-fourth of individual shape differences, results in 2D almost perfectly mirror those in 3D. This apparent paradox might be explained by the small strength of covariation in the component of shape variance related to measurement error. A rigorous standardization of photographic settings and the choice of almost coplanar landmarks are likely to further improve the correspondence of 2D to 3D shapes. 2D geometric morphometrics is, thus, appropriate for taxonomic comparisons of patas ventral crania. Although it is too early to generalize, our results corroborate similar findings from previous research in mammals, and suggest that 2D shape analyses are an effective heuristic tool for morphological investigation of small differences.
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Affiliation(s)
- Andrea Cardini
- Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Modena, Italy.,School of Anatomy, Physiology and Human Biology, The University of Western Australia, Crawley, Western Australia, Australia
| | - Yvonne A de Jong
- Eastern Africa Primate Diversity and Conservation Program and Lolldaiga Hills Research Programme, Nanyuki, Kenya
| | - Thomas M Butynski
- Eastern Africa Primate Diversity and Conservation Program and Lolldaiga Hills Research Programme, Nanyuki, Kenya
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18
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Thioulouse J, Renaud S, Dufour AB, Dray S. Overcoming the Spurious Groups Problem in Between-Group PCA. Evol Biol 2021. [DOI: 10.1007/s11692-021-09550-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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19
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Arias-Martorell J, Almécija S, Urciuoli A, Nakatsukasa M, Moyà-Solà S, Alba DM. A proximal radius of Barberapithecus huerzeleri from Castell de Barberà: Implications for locomotor diversity among pliopithecoids. J Hum Evol 2021; 157:103032. [PMID: 34233242 DOI: 10.1016/j.jhevol.2021.103032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2021] [Revised: 05/31/2021] [Accepted: 05/31/2021] [Indexed: 10/20/2022]
Abstract
Pliopithecoids are a diverse group of Miocene catarrhine primates from Eurasia. Their positional behavior is still unknown, and many species are known exclusively from dentognathic remains. Here, we describe a proximal radius (IPS66267) from the late Miocene of Castell de Barberà (Vallès-Penedès Basin, NE Iberian Peninsula) that represents the first postcranial specimen of the pliopithecoid Barberapithecus huerzeleri. A body mass estimate based on the radius is compared with dental estimates, and its morphology is compared with that of extant and fossil anthropoids by qualitative means as well as by landmark-based three-dimensional geometric morphometrics. The estimated body mass of ∼5 kg for IPS66267 closely matches the dental estimates for the (female) holotype, thereby discounting an alternative attribution to the large-bodied hominoid recorded at Castell de Barberà. In multiple features (oval and moderately tilted head with a pronounced lateral lip and a restricted articular area for the capitulum; proximodistally expanded proximal radioulnar joint; and short, robust, and anteroposteriorly compressed neck), the specimen differs from hominoids and resembles instead extant nonateline monkeys and stem catarrhines. The results of the morphometric analysis further indicate that the Barberapithecus proximal radius shows closer similarities with nonsuspensory arboreal cercopithecoids and the dendropithecid Simiolus. From a locomotor viewpoint, the radius of Barberapithecus lacks most of the features functionally related to climbing and/or suspensory behaviors and displays instead a proximal radioulnar joint that would have been particularly stable under pronation. On the other hand, the Barberapithecus radius differs from other stem catarrhines in the less anteroposteriorly compressed and less tilted radial head with a deeper capitular fovea, suggesting a somewhat enhanced mobility at the elbow joint. We conclude that pronograde arboreal quadrupedalism was the main component of the locomotor repertoire of Barberapithecus but that, similar to other crouzeliids, it might have displayed better climbing abilities than pliopithecids.
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Affiliation(s)
- Julia Arias-Martorell
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, Cerdanyola del Vallès, 08193, Barcelona, Spain; School of Anthropology and Conservation, Marlowe Building University of Kent, Canterbury, CT2 7NR, UK.
| | - Sergio Almécija
- Division of Anthropology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; New York Consortium in Evolutionary Primatology, New York, NY 10024, USA; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Alessandro Urciuoli
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Masato Nakatsukasa
- Laboratory of Physical Anthropology, Graduate School of Science, Kyoto University, 606-8502 Kyoto, Japan
| | - Salvador Moyà-Solà
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, Cerdanyola del Vallès, 08193, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig de Lluís Companys 23, 08010, Barcelona, Spain; Unitat d'Antropologia Biològica (Departament de Biologia Animal, Biologia Vegetal i Ecologia), Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, Cerdanyola del Vallès, 08193, Barcelona, Spain.
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20
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Milella M, Franklin D, Belcastro MG, Cardini A. Sexual differences in human cranial morphology: Is one sex more variable or one region more dimorphic? Anat Rec (Hoboken) 2021; 304:2789-2810. [PMID: 33773067 DOI: 10.1002/ar.24626] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 02/25/2021] [Accepted: 03/01/2021] [Indexed: 01/06/2023]
Abstract
The quantification of cranial sexual dimorphism (CSD) among modern humans is relevant in evolutionary studies of morphological variation and in a forensic context. Despite the abundance of quantitative studies of CSD, few have specifically examined intra-sex variability. Here we quantify CSD in a geographically homogeneous sample of adult crania, which includes Italian individuals from the 19th and 20th centuries. Cranial morphology is described with 92 3D landmarks analyzed using Procrustean geometric morphometrics (PGMM). Size and shape variables are used to compare morphological variance between sexes in the whole cranium and four individual regions. The same variables, plus Procrustes form, are used to quantify average sex differences and explore classification accuracy. Our results indicate that: (a) as predicted by Wainer's rule, males present overall more variance in size and shape, albeit this is statistically significant only for total cranial size; (b) differences between sexes are dominated by size and to a lesser extent by Procrustes form; (c) shape only accounts for a minor proportion of variance; (d) the cranial base shows almost no dimorphism for shape; and (e) facial Procrustes form is the most accurate predictor of skeletal sex. Overall, this study suggests developmental factors underlying differences in CSD among cranial regions; stresses the need for population-specific models that describe craniofacial variation as the basis for models that facilitate the estimation of sex in unidentified skeletal remains; and provides one of the first confirmations of "Wainer's rule" in relation to sexual dimorphism in mammals specific to the human cranium.
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Affiliation(s)
- Marco Milella
- Department of Physical Anthropology, Institute of Forensic Medicine, University of Bern, Bern, Switzerland
| | - Daniel Franklin
- Centre for Forensic Anthropology, The University of Western Australia, Crawley, Western Australia, Australia
| | - Maria Giovanna Belcastro
- Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum, University of Bologna, Bologna, Italy
| | - Andrea Cardini
- Centre for Forensic Anthropology, The University of Western Australia, Crawley, Western Australia, Australia.,Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Modena, Italy
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21
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Blinkhorn J, Zanolli C, Compton T, Groucutt HS, Scerri EML, Crété L, Stringer C, Petraglia MD, Blockley S. Nubian Levallois technology associated with southernmost Neanderthals. Sci Rep 2021; 11:2869. [PMID: 33589653 PMCID: PMC7884387 DOI: 10.1038/s41598-021-82257-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Accepted: 01/18/2021] [Indexed: 01/30/2023] Open
Abstract
Neanderthals occurred widely across north Eurasian landscapes, but between ~ 70 and 50 thousand years ago (ka) they expanded southwards into the Levant, which had previously been inhabited by Homo sapiens. Palaeoanthropological research in the first half of the twentieth century demonstrated alternate occupations of the Levant by Neanderthal and Homo sapiens populations, yet key early findings have largely been overlooked in later studies. Here, we present the results of new examinations of both the fossil and archaeological collections from Shukbah Cave, located in the Palestinian West Bank, presenting new quantitative analyses of a hominin lower first molar and associated stone tool assemblage. The hominin tooth shows clear Neanderthal affinities, making it the southernmost known fossil specimen of this population/species. The associated Middle Palaeolithic stone tool assemblage is dominated by Levallois reduction methods, including the presence of Nubian Levallois points and cores. This is the first direct association between Neanderthals and Nubian Levallois technology, demonstrating that this stone tool technology should not be considered an exclusive marker of Homo sapiens.
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Affiliation(s)
- James Blinkhorn
- grid.469873.70000 0004 4914 1197Pan-African Evolution Research Group, Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany ,grid.4970.a0000 0001 2188 881XCentre for Quaternary Research, Department of Geography, Royal Holloway University of London, Egham Hill, Egham, Surrey UK
| | - Clément Zanolli
- grid.503132.60000 0004 0383 1969Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, 33600 Pessac, France
| | - Tim Compton
- grid.35937.3b0000 0001 2270 9879Centre for Human Evolution Research, Department of Earth Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD UK
| | - Huw S. Groucutt
- grid.4372.20000 0001 2105 1091Extreme Events Research Group, Max Planck Institutes for Chemical Ecology, The Science of Human History, and Biogeochemistry, Hans-Knöll-Strasse 8, 07745 Jena, Germany ,grid.469873.70000 0004 4914 1197Department of Archaeology, Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany ,grid.6190.e0000 0000 8580 3777Institute of Prehistoric Archaeology, University of Cologne, 50931 Cologne, Germany
| | - Eleanor M. L. Scerri
- grid.469873.70000 0004 4914 1197Pan-African Evolution Research Group, Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany ,grid.4462.40000 0001 2176 9482Department of Classics and Archaeology, University of Malta, Msida, 2080 MSD Malta ,grid.6190.e0000 0000 8580 3777Institute of Prehistoric Archaeology, University of Cologne, 50931 Cologne, Germany
| | - Lucile Crété
- grid.35937.3b0000 0001 2270 9879Centre for Human Evolution Research, Department of Earth Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD UK
| | - Chris Stringer
- grid.35937.3b0000 0001 2270 9879Centre for Human Evolution Research, Department of Earth Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD UK
| | - Michael D. Petraglia
- grid.469873.70000 0004 4914 1197Department of Archaeology, Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany ,grid.1214.60000 0000 8716 3312Human Origins Program, Smithsonian Institution, Washington, DC 20560 USA ,grid.1003.20000 0000 9320 7537School of Social Science, The University of Queensland, Brisbane, QLD 4072 Australia
| | - Simon Blockley
- grid.4970.a0000 0001 2188 881XCentre for Quaternary Research, Department of Geography, Royal Holloway University of London, Egham Hill, Egham, Surrey UK
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Reassessment of the phylogenetic relationships of the late Miocene apes Hispanopithecus and Rudapithecus based on vestibular morphology. Proc Natl Acad Sci U S A 2021; 118:2015215118. [PMID: 33495351 DOI: 10.1073/pnas.2015215118] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Late Miocene great apes are key to reconstructing the ancestral morphotype from which earliest hominins evolved. Despite consensus that the late Miocene dryopith great apes Hispanopithecus laietanus (Spain) and Rudapithecus hungaricus (Hungary) are closely related (Hominidae), ongoing debate on their phylogenetic relationships with extant apes (stem hominids, hominines, or pongines) complicates our understanding of great ape and human evolution. To clarify this question, we rely on the morphology of the inner ear semicircular canals, which has been shown to be phylogenetically informative. Based on microcomputed tomography scans, we describe the vestibular morphology of Hispanopithecus and Rudapithecus, and compare them with extant hominoids using landmark-free deformation-based three-dimensional geometric morphometric analyses. We also provide critical evidence about the evolutionary patterns of the vestibular apparatus in living and fossil hominoids under different phylogenetic assumptions for dryopiths. Our results are consistent with the distinction of Rudapithecus and Hispanopithecus at the genus rank, and further support their allocation to the Hominidae based on their derived semicircular canal volumetric proportions. Compared with extant hominids, the vestibular morphology of Hispanopithecus and Rudapithecus most closely resembles that of African apes, and differs from the derived condition of orangutans. However, the vestibular morphologies reconstructed for the last common ancestors of dryopiths, crown hominines, and crown hominids are very similar, indicating that hominines are plesiomorphic in this regard. Therefore, our results do not conclusively favor a hominine or stem hominid status for the investigated dryopiths.
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Urciuoli A, Zanolli C, Beaudet A, Pina M, Almécija S, Moyà-Solà S, Alba DM. A comparative analysis of the vestibular apparatus in Epipliopithecus vindobonensis: Phylogenetic implications. J Hum Evol 2021; 151:102930. [PMID: 33422741 DOI: 10.1016/j.jhevol.2020.102930] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 12/06/2020] [Accepted: 12/06/2020] [Indexed: 12/19/2022]
Abstract
Pliopithecoids are an extinct group of catarrhine primates from the Miocene of Eurasia. More than 50 years ago, they were linked to hylobatids due to some morphological similarities, but most subsequent studies have supported a stem catarrhine status, due to the retention of multiple plesiomorphic features (e.g., the ectotympanic morphology) relative to crown catarrhines. More recently, some morphological similarities to hominoids have been noted, raising the question of whether they could be stem members of this clade. To re-evaluate these competing hypotheses, we examine the morphology of the semicircular canals of the bony labyrinth of the middle Miocene pliopithecid Epipliopithecus vindobonensis. The semicircular canals are suitable to test between these hypotheses because (1) they have been shown to embed strong phylogenetic signal and reliably discriminate among major clades; (2) several potential hominoid synapomorphies have been identified previously in the semicircular canals; and (3) semicircular canal morphology has not been previously described for any pliopithecoid. We use a deformation-based (landmark-free) three-dimensional geometric morphometric approach to compare Epipliopithecus with a broad primate sample of extant and extinct anthropoids. We quantify similarities in semicircular canal morphology using multivariate analyses, reconstruct ancestral morphotypes by means of a phylomorphospace approach, and identify catarrhine and hominoid synapomorphies based on discrete characters. Epipliopithecus semicircular canal morphology most closely resembles that of platyrrhines and Aegyptopithecus due to the retention of multiple anthropoid symplesiomorphies. However, Epipliopithecus is most parsimoniously interpreted as a stem catarrhine more derived than Aegyptopithecus due to the possession of a crown catarrhine synapomorphy (i.e., the rounded anterior canal), combined with the lack of other catarrhine and any hominoid synapomorphies. Some similarities with hylobatids and atelids are interpreted as homoplasies likely related to positional behavior. The semicircular canal morphology of Epipliopithecus thus supports the common view that pliopithecoids are stem catarrhines.
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Affiliation(s)
- Alessandro Urciuoli
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain.
| | - Clément Zanolli
- Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, F-33600, Pessac, France
| | - Amélie Beaudet
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; School of Geography, Archaeology and Environmental Studies, University of the Witwatersrand, Private Bag 3, Johannesburg, WITS 2050, South Africa; Department of Anatomy, University of Pretoria, PO Box 2034, Pretoria, 0001, South Africa
| | - Marta Pina
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; School of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, 176 Oxford Road, Manchester, M13 9PL, UK
| | - Sergio Almécija
- Division of Anthropology, American Museum of Natural History, Central Park West at 79(th) Street, New York, NY 10024, USA; New York Consortium in Evolutionary Primatology, New York, NY, USA; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Salvador Moyà-Solà
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig de Lluís Companys 23, 08010 Barcelona, Spain; Unitat d'Antropologia (Departament de Biologia Animal, Biologia Vegetal i Ecologia), Universitat Autònoma de Barcelona, Campus de la UAB s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, Campus de la UAB, 08193 Cerdanyola del Vallès, Barcelona, Spain.
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24
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Rohlf FJ. Why Clusters and Other Patterns Can Seem to be Found in Analyses of High-Dimensional Data. Evol Biol 2020. [DOI: 10.1007/s11692-020-09518-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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25
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Pan L, Dumoncel J, Mazurier A, Zanolli C. Hominin diversity in East Asia during the Middle Pleistocene: A premolar endostructural perspective. J Hum Evol 2020; 148:102888. [PMID: 33039881 DOI: 10.1016/j.jhevol.2020.102888] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Revised: 09/10/2020] [Accepted: 09/10/2020] [Indexed: 12/16/2022]
Abstract
Following the recent studies of East Asian mid-Middle to early Late Pleistocene hominin material, a large spectrum of morphological diversity has been recognized and the coexistence of archaic ('Homo erectus-like') and derived ('modern-like') dental morphological patterns has been highlighted. In fact, for most of these Chinese fossils, generally categorized as 'archaic Homo sapiens' or 'post-H. erectus Homo', the taxonomic attribution is a matter of contention. With the help of μCT techniques and a deformation-based 3D geometric morphometric approach, we focused on the morphological variation in the enamel-dentine junction (EDJ) of 18 upper and lower premolars from Chinese Middle Pleistocene hominins. We then compared our results with a number of fossil and modern human groups, including Early Pleistocene H. erectus from Sangiran; late Early Pleistocene hominins from Tighenif, Algeria; classic Neanderthals; and modern humans. Our results highlight an evolutionary/chronological trend of crown base reduction, elevation of EDJ topography, and EDJ surface simplification in the hominin groups studied here. Moreover, this study brings insights to the taxonomy/phylogeny of 6 late Middle Pleistocene specimens whose evolutionary placement has been debated for decades. Among these specimens, Changyang premolars show features that can be aligned with the Asian H. erectus hypodigm, whereas Panxian Dadong and Tongzi premolars are more similar to Late Pleistocene Homo. Compared with early to mid-Middle Pleistocene hominins in East Asia, late Middle Pleistocene hominins evince an enlarged morphological variation. A persistence of archaic morphotypes and possible admixture among populations during the late Middle Pleistocene are discussed.
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Affiliation(s)
- Lei Pan
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, CAS, Beijing, China; State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, CAS, Nanjing, China
| | - Jean Dumoncel
- Laboratoire AMIS, UMR 5288 CNRS, Université Toulouse III, Paul Sabatier, France
| | - Arnaud Mazurier
- Institut de Chimie des Milieux et Matériaux, UMR 7285 CNRS, Université de Poitiers, 86073, Poitiers, France
| | - Clément Zanolli
- Univ. Bordeaux, CNRS, MCC, PACEA, UMR 5199, F-33600 Pessac, France.
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Wasiljew BD, Pfaender J, Wipfler B, Utama IV, Herder F. Do we need the third dimension? Quantifying the effect of the z-axis in 3D geometric morphometrics based on sailfin silversides (Telmatherinidae). JOURNAL OF FISH BIOLOGY 2020; 97:537-545. [PMID: 32447773 DOI: 10.1111/jfb.14410] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 05/14/2020] [Accepted: 05/21/2020] [Indexed: 06/11/2023]
Abstract
This study investigated the impact of the third dimension in geometric morphometrics (GM) using sailfin silversides (Telmatherinidae) from the Malili Lakes of Sulawesi (Indonesia). The three morphospecies of the monophyletic "roundfin" radiation are laterally compressed and vary in shape traits. The results of 2D and 3D GM were compared and quantified to discuss the advantages and disadvantages of both methods for closely related species and their sexes. This approach focused on the head because it is far more complex and three-dimensionally structured than the trunk or the caudal region. The results revealed no significant benefit concerning repeatability and measurement error in 3D GM compared to 2D GM. The z-axis contributed substantially to the variance of the 3D data set but was irrelevant for discrimination of species and sexes in the approach. Limited gain in information was contrasted by substantially higher effort for 3D compared to the 2D analyses. The study concluded that 2D GM is the more efficient shape analysis approach for discriminating roundfins. Broader studies are needed to test which of the two methods is more efficient in distinguishing laterally compressed fishes in general. For future studies, due to the high investment required, this study recommends carefully evaluating the necessity of 3D GM. If in doubt, this study suggests testing for congruence between 2D and 3D GM with a subsample and consequently applying 2D GM in the case of high congruence.
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Affiliation(s)
- Benjamin D Wasiljew
- Sektion Ichthyologie, Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany
| | - Jobst Pfaender
- Ichthyologie, Naturkundemuseum Potsdam, Potsdam, Germany
| | - Benjamin Wipfler
- Sektion Ichthyologie, Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany
| | - Ilham Vemandra Utama
- Ichthyology Laboratory, Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI), Bogor, Indonesia
| | - Fabian Herder
- Sektion Ichthyologie, Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany
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