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For: Zhao S, Zhang L, Liu X. AE-TPGG: a novel autoencoder-based approach for single-cell RNA-seq data imputation and dimensionality reduction. Front Comput Sci 2022;17:173902. [PMID: 36320820 PMCID: PMC9607720 DOI: 10.1007/s11704-022-2011-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 04/15/2022] [Indexed: 06/16/2023]
Number Cited by Other Article(s)
1
Gong L, Cui X, Liu Y, Lin C, Gao Z. SinCWIm: An imputation method for single-cell RNA sequence dropouts using weighted alternating least squares. Comput Biol Med 2024;171:108225. [PMID: 38442556 DOI: 10.1016/j.compbiomed.2024.108225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 01/28/2024] [Accepted: 02/25/2024] [Indexed: 03/07/2024]
2
Fang Z, Zheng R, Li M. scMAE: a masked autoencoder for single-cell RNA-seq clustering. Bioinformatics 2024;40:btae020. [PMID: 38230824 PMCID: PMC10832357 DOI: 10.1093/bioinformatics/btae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 01/07/2024] [Accepted: 01/12/2024] [Indexed: 01/18/2024]  Open
3
Fang Z, Liu T, Zheng R, A J, Yin M, Li M. stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics. Brief Bioinform 2023;25:bbad500. [PMID: 38189544 PMCID: PMC10772985 DOI: 10.1093/bib/bbad500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 11/22/2023] [Accepted: 12/11/2023] [Indexed: 01/09/2024]  Open
4
Qi Y, Han S, Tang L, Liu L. Imputation method for single-cell RNA-seq data using neural topic model. Gigascience 2022;12:giad098. [PMID: 38000911 PMCID: PMC10673642 DOI: 10.1093/gigascience/giad098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 09/02/2023] [Accepted: 10/23/2023] [Indexed: 11/26/2023]  Open
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